Life Sciences Commons^™

Sequence-Based Analysis Of Structural Organization And Composition Of The Cultivated Sunflower (Helianthus Annuus L.) Genome, Navdeep Gill, Matteo Buti, Nolan Kane, Arnaud Bellec, Nicolas Helmstetter, Hélène Berges, Loren Rieseberg

Biology Faculty Articles

Sunflower is an important oilseed crop, as well as a model system for evolutionary studies, but its 3.6 gigabase genome has proven difficult to assemble, in part because of the high repeat content of its genome. Here we report on the sequencing, assembly, and analyses of 96 randomly chosen BACs from sunflower to provide additional information on the repeat content of the sunflower genome, assess how repetitive elements in the sunflower genome are organized relative to genes, and compare the genomic distribution of these repeats to that found in other food crops and model species. We also examine the expression …

Ecology Of The Oceanic Rim: Pelagic Eels As Key Ecosystem Components, Jennifer N. Feagans-Bartow, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Although 92% of the total volume of the world’s oceans occurs below a depth of 200 m, our understanding of deep-sea food webs lags far behind that of continental shelves. In particular, little is known about the exchange of biomass at the interface of continental margins and deep-sea ecosystems. Recent studies suggest that the transport of organic matter from continental shelves may influence deep-sea ecosystems more than previously thought. Here, we present results of a pelagic nekton survey along the southern slope of Georges Bank, NW Atlantic, a transition area between coastal and deep-sea environments. Specimens were collected as part …

Intraspecific Variation In Vertical Habitat Use By Tiger Sharks (Galeocerdo Cuvier) In The Western North Atlantic, Jeremy J. Vaudo, Bradley M. Wetherbee, Guy Harvey, Richard S. Nemeth, Choy Aming, Lucy A. Howey-Jordan, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Tiger sharks (Galeocerdo cuvier) are a wide ranging, potentially keystone predator species that display a variety of horizontal movement patterns, making use of coastal and pelagic waters. Far less, however, is known about their vertical movements and use of the water column. We used pop-up satellite archival tags with two data sampling rates (high rate and standard rate tags) to investigate the vertical habitat use and diving behavior of tiger sharks tagged on the Puerto Rico–Virgin Islands platform and off Bermuda between 2008 and 2009. Useable data were received from nine of 14 sharks tagged, tracked over a …

Measuring Viability Of The Red-Tide Dinoflagellate Lingulodinium Polyedra Following Treatment With Ultraviolet (Uv) Light, Scott Riley

HCNSO Student Theses and Dissertations

Harmful algae blooms (HABs) have caused millions dollars in annual losses to the aquaculture industry, inhibited beach recreation, and have threatened marine and human health. HABs and red tides can develop suddenly and their frequency, geographic range, and intensity have increased over the past decade. A possible source for spreading and seeding new areas expanding the geographic range of HABs is ballast water. The process of ballast water discharge has been identified as a primary vector for the translocation of non-indigenous species (NIS) and invasive species. National and international efforts are currently underway to address the impact of NIS and …

13th Annual Undergraduate Student Symposium, Farquhar Honors College

Undergraduate Student Symposium

The Undergraduate Student Symposium, sponsored by the Farquhar College of Arts and Sciences, presents student projects through presentations, papers, and poster displays. The event serves as a “showcase” demonstrating the outstanding scholarship of undergraduate students at NSU. The Symposium is open to undergraduate students from all disciplines. Projects cover areas of student scholarship ranging from the experimental and the applied to the computational, theoretical, artistic, and literary. They are taken from class assignments as well as from independent projects. The projects do not have to be complete; presentations can represent any stage in the concept’s evolution, from proposal and literature …

The Lli Chronicle Volume 5 Number 2, Nova Southeastern University

Lifelong Learning Institute Newsletters

No abstract provided.

A New Species Of Cybianthus (Myrsinaceae) From Tobago And Venezuela, John J. Pipoly Iii, Jon M. Ricketson

Marine & Environmental Sciences Faculty Articles

ybianthus pittierianus Pipoly & Ricketson (Myrsinaceae) is described from Tobago, and its taxonomic relationships are discussed. This species is often confused with C. rostratus (Hassk.) G. Agostini owing to its free portions of the filaments being longer than the anthers, and leaves with similar elliptic shapes and with petioles less than 1.2 cm. However, C. pittierianus is easily distinguished from C. rostratus by the former's leaf blade apices abruptly acute to short-acuminate (vs. long-acuminate to caudate), with secondary veins in 18 to 24 pairs (vs. 28 to 32 pairs), corollas 2.4–3 mm (vs. 2.1–2.5 mm), and corolla lobes chartaceous (vs. …

Increase Of Excavating Sponges On Caribbean Coral Reefs: Reproduction, Dispersal, And Coral Deterioration, Andia Chaves-Fonnegra

HCNSO Student Theses and Dissertations

Coral reefs ecosystems are deteriorating and facing dramatic changes. These changes suggest a shift in dominance from corals to other benthic organisms. Particularly in the Caribbean Sea, with corals dying, sponges have become the leading habitat-forming benthic animals. However, little is known about what life-history traits allow organisms to proliferate in a marine system that is undergoing change. Thus, the objective of this dissertation was to try to understand the current increase of encrusting excavating sponges on deteriorating Caribbean coral reefs through the study of reproduction, recruitment and dispersal potential of the widely distributed and currently expanding species, Cliona delitrix …

Historical Reconstruction Of Population Density Of The Echinoid Diadema Antillarum On Florida Keys Shallow Bank-Barrier Reefs, Donald L. Kissling, William F. Precht, Steven Miller, Mark Chiappone

Marine & Environmental Sciences Faculty Articles

The 1983–1984 caribbean-wide mass mortality of the once ubiquitous long-spined sea urchin Diadema antillarum Philippi, 1845, is one of several factors considered responsible for coral reef change throughout the region. Unfortunately, there is a paucity of pre-mortality event density data for D. antillarum in the Florida Keys, making it difficult to determine pre-1983 population density levels. results from surveys conducted during 1970–1973 in the lower Florida Keys, in shallow (<12 m) fore reef habitats, yielded relatively abundant and widespread D. antillarum densities in qualitative transects at five reefs prior to the 1983–1984 die-off. In quantitative surveys at one reef, Middle sambo reef in 1972, up to 7.9 individuals m …

Lectotypification Of Ardisia Dawnaea (Myrsinaceae), Jon M. Ricketson, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Articles

A taxonomically complex issue regarding Ardisia gracilis Lace, A. dawnaea C. E. Parkinson, and A. dawnensis M. P. Nayar & G. S. Giri (Myrsinaceae) from Burma [Myanmar] is discussed and resolved with the lectotypification of A. dawnaea.

A New Combination In Ardisia (Myrsinaceae) From Vietnam, Jon M. Ricketson, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Articles

The lectotypification of Ardisia tinctoria Pit. and subsequent reidentification of the type material as A. quinquegona Blume subsp. quinquegona resulted in two collections being orphaned under the name A. tinctoria var. microcarpa Pit. We elect to elevate the variety name A. tinctoria var. microcarpa and, here, propose the following new combination, A. microcarpa (Pit.) Ricketson & Pipoly, comb. et stat. nov., to accommodate these orphaned collections.

Evidence Of The Enemy Release Hypothesis: Parasites Of The Lionfish Complex (Pterios Volitans And P. Miles) In The Western North Atlantic, Gulf Of Mexico, And Caribbean Sea, Kayelyn Regina Simmons

HCNSO Student Theses and Dissertations

Invasive species are becoming more common as human interactions within coastal waters and the aquarium trade continues to increase. The establishment of the invasive lionfish complex Pterois volitans and P. miles from the Indo-Pacific to the Western Atlantic, Gulf of Mexico, and the Caribbean Sea has had significant negative effects on reef fish biodiversity and economically important species. Their rapid colonization and success has been attributed to their biological and ecological life history traits as well as their absence of predation. Past research has highlighted these characteristics; however, there is a knowledge gap in lionfish parasitism. This research explored the …

Molecular Ecology Of Globally Distributed Sharks, Christine B. Testerman

HCNSO Student Theses and Dissertations

Many sharks have life history characteristics (e.g., slow growth, late age at maturity, low fecundity, and long gestation periods) that make their populations vulnerable to collapse due to overfishing. The porbeagle (Lamna nasus), bull shark (Carcharhinus leucas), great hammerhead (Sphyrna mokarran), and smooth hammerhead (S. zygaena), are all commercially exploited. The population genetic structure of these species was assessed based on globally distributed sample sets using mitochondrial control region (mtCR) sequences and/or nuclear markers. Complex patterns of evolutionary and demographic history were inferred using coalescent and statistical moment-based methods. All four species showed …

Combined Gut Content-Stable Isotope Trophic Analysis And Satellite Tagging Of The Pelagic Stingray Pteroplaytrygon Violacea (Bonaparte, 1832) From The Western North Atlantic Ocean, Tiffany A. Weidner

HCNSO Student Theses and Dissertations

The pelagic stingray, Pteroplatytrygon violacea, is a bycatch species in the global pelagic longline fishery. However, little research has been conducted on its basic biology, including prey composition, trophic positioning, and habitat utilization. Descriptions of the habitat utilization have largely been through indirect analyses of catch rates in commercial fisheries, which also provided no information on actual behaviors. The first chapter of this thesis will describe the habitat utilization and behavior of four individual pelagic stingrays using electronic tagging technology. Prior diet descriptions were hampered, in part, by low sample sizes and accordingly provided little information on the ecological …

Gene Discovery And Data Sharing In Genome Wide Association Analyses: Lessons Form Aids Genetic Restriction Genes, Stephen J. O'Brien, Anton Svitin, Sergey Malov, Nikolay Cherkasov, Pavel Dobrynin, Paul Geerts, Jennifer L. Troyer, Sher L. Hendrickson, Efe Sezgin, Holli Hutcheson

Biology Faculty Articles

As genome wide association studies plus whole genome sequence analyses for complex human disease determinants are expanding, it seems useful to develop strategies to facilitate large data sharing, rapid replication and validation of provocative statistical associations that straddle the threshold for genome wide significance. At this conference, we shall announce GWATCH, (Genome Wide Association Tracks Chromosome Highway) a web based data release platform that can freely display and inspect unabridged genome tracked association data without compromising privacy or Informed Consent constrictions, allowing for rapid discovery and replication opportunities. We illustrate the utility with HIV-AIDS resistance genes screened in combined large …

Second-Grade Science Collaborations: Exploring States Of Matter, Forces, Motion, And Energy, Emily F. Schmitt Lavin, K. Donovan, C. Hughes, D. Boruch

Biology Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Programmed Allee Effect In Bacteria Causes A Tradeoff Between Population Spread And Survival, Robert P. Smith, Cheemang Tan, Jaydeep K. Srimani, Anand Pai, Katherine A. Riccione, Hao Song, Lingchong You

Biology Faculty Articles

Dispersal is necessary for spread into new habitats, but it has also been shown to inhibit spread. Theoretical studies have suggested that the presence of a strong Allee effect may account for these counterintuitive observations. Experimental demonstration of this notion is lacking due to the difficulty in quantitative analysis of such phenomena in a natural setting. We engineered Escherichia coli to exhibit a strong Allee effect and examined how the Allee effect would affect the spread of the engineered bacteria. We showed that the Allee effect led to a biphasic dependence of bacterial spread on the dispersal rate: spread is …

In Vitro Interaction Of Pseudomonas Aeruginosa With Human Middle Ear Epithelial Cells, Rahul Mittal, M'Hamed Grati, Robert Gerring, Patricia Blackwelder, Denise Yan, Jian-Dong Li, Xue Zhong Liu

Marine & Environmental Sciences Faculty Articles

Background: Otitis media (OM) is an inflammation of the middle ear which can be acute or chronic. Acute OM is caused by Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis whereas Pseudomonas aeruginosa is a leading cause of chronic suppurative otitis media (CSOM). CSOM is a chronic inflammatory disorder of the middle ear characterized by infection and discharge. The survivors often suffer from hearing loss and neurological sequelae. However, no information is available regarding the interaction of P. aeruginosa with human middle ear epithelial cells (HMEECs).

Methodology and Findings: In the present investigation, we demonstrate that P. …

Role Of Erk1, 2, And 5 In Dopamine Neuron Survival During Aging, Mayur S. Parmar, Juliann D. Jaumotte, Stephanie L. Wyrostek, Michael J. Zigmond, Jane E. Cavanaugh

HPD Articles

Extracellular signal-regulated kinases (ERKs) 1, 2, and 5 have been shown to play distinct roles in proliferation, differentiation, and neuronal viability. In this study, we examined ERK1, 2, and 5 expression and activation in the substantia nigra (SN), striatum (STR), and ventral tegmental area (VTA) during aging. An age-related decrease in phosphorylated ERK5 was observed in the SN and STR, whereas an increase in total ERK1 was observed in all 3 regions. In primary cultures of the SN and VTA, inhibition of ERK5 but not ERK1 and 2 decreased dopamine neuronal viability significantly. These data suggest that ERK5 is essential …

Trophic Dynamics And Feeding Ecology Of The Southeast Florida Coastal Pelagic Fish Community, Travis Allan Moore

HCNSO Student Theses and Dissertations

The combined methods of stomach content analysis and stable ¹⁵N and ¹³C isotope biochemistry analysis were used to investigate the trophic dynamics and feeding ecology of coastal pelagic fishes in the waters off southeastern Florida, USA. The coastal pelagic fish complex includes blackfin tuna Thunnus atlanticus, dolphinfish Coryphaena hippurus, king mackerel Scomberomorus cavalla, little tunny Euthynnus alletteratus, skipjack tuna Katsuwonus pelamis, and wahoo Acanthocybium solandri. These coastal teleosts, particularly the tunas and wahoo, are primarily targeted by recreational anglers. However, there is a shortage of available trophic and diet composition data concerning …

Genetic Characterization And Role In Virulence Of The Ribonucleotide Reductases Of Streptococcus Sanguinis, Delacy V. Rhodes, Katie E. Crump, Olga Makhlynets, Melanie Snyder, Xiuchun Ge, Ping Xu, Joanne Stubbe, Todd Kitten

Biology Faculty Articles

Streptococcus sanguinis is a cause of infective endocarditis and has been shown to require a manganese transporter called SsaB for virulence and O₂ tolerance. Like certain other pathogens, S. sanguinis possesses aerobic class Ib (NrdEF) and anaerobic class III (NrdDG) ribonucleotide reductases (RNRs) that perform the essential function of reducing ribonucleotides to deoxyribonucleotides. The accompanying paper (Makhlynets, O., Boal, A. K., Rhodes, D. V., Kitten, T., Rosenzweig, A. C., and Stubbe, J. (2014) J. Biol. Chem. 289, 6259–6272) indicates that in the presence of O₂, the S. sanguinis class Ib RNR self-assembles an essential diferric-tyrosyl radical (Fe …

Perceived Risk Of Predation Affects Reproductive Life-History Traits In Gambusia Holbrooki, But Not In Heterandria Formosa, Shomen Kukherjee, Michael Heithaus, Joel C. Trexler, Jayanti Ray-Mukherjee, Jeremy Vaudo

Marine & Environmental Sciences Faculty Articles

Key to predicting impacts of predation is understanding the mechanisms through which predators impact prey populations. While consumptive effects are well-known, non-consumptive predator effects (risk effects) are increasingly being recognized as important. Studies of risk effects, however, have focused largely on how trade-offs between food and safety affect fitness. Less documented, and appreciated, is the potential for predator presence to directly suppress prey reproduction and affect life-history characteristics. For the first time, we tested the effects of visual predator cues on reproduction of two prey species with different reproductive modes, lecithotrophy (i.e. embryonic development primarily fueled by yolk) and matrotrophy …

Post Disturbance Coral Populations: Patterns In Live Cover And Colony Size Classes From Transect Studies In Two Oceans, Claire A. Dolphin

HCNSO Student Theses and Dissertations

This study analyzes data acquired in French Polynesia in the Pacific and The Bahamas (Atlantic), both oceans affected by recent, well documented and sequential disturbances. For the purposes of this study, a disturbance is defined as a perturbation of environmental, physical or biological conditions that causes a distinct change in the ecosystem. After several decades of coral bleaching events, biological change, and anthropogenic impacts, rapid assessments of the coral community were accomplished by collecting photo-transects across the reefs to extract size structure of the corals, percent live tissue cover and perform a faunal evaluation. Cluster analyses and spatial autocorrelation tests …

Landscape Mulches, Recycling Yard Waste, And Fertilizing Appropriately, Adam Pitcher, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Principles Of Florida-Friendly Landscaping(Tm), John J. Pipoly Iii

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

The Lli Chronicle Volume 5 Number 1, Nova Southeastern University

Lifelong Learning Institute Newsletters

No abstract provided.

Florida-Friendly Landscaping(Tm) Right Plant, Right Place; Integrated Pest Management; And Attracting Wildlife, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Landscape Mulches, Recycling Yard Waste, And Fertilizing Appropriately, Adam Pitcher, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

The Noaa Nrda Gulf Of Mexico Offshore Fish And Nekton Program: Rationale, Design And Sampling/Sensing Synopsis, Tracey Sutton, K. M. Boswell

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Deepwater Horizon Oil Spill was not only unique for its material volume but also for its depth, ~1500 m, necessitating a wholewater- column approach for assessment. Given the absence of data regarding the pelagic fauna at these depths, a large-scale program was developed that included at-sea sampling/sensing, sample analysis, and database management. A four-cruise survey aboard the NOAA ship Pisces was conducted to provide data on the pelagic nekton from the surface to 1600 m, with emphasis between 800-1400 m (subsurface plume depth). Multi-frequency acoustic data were collected simultaneously to further characterize the horizontal and vertical distribution of pelagic …

Fall 2014, Nsu Oceanographic Center

Currents

No abstract provided.