Life Sciences Commons^™

Environmental Perspective For System Dynamics Modeling Of Stunting Mitigation To Achieve The Sustainable Development Goals In West Sumatra, Indonesia, Elsa Yuniarti, Nabila Azzahra, Yulhendri Yulhendri, Heldi Heldi, Mery Delvina, Saskia Putri Azeli

Kesmas

This study developed a system dynamics model to simulate stunting reduction in West Sumatra Province, Indonesia, by integrating infant and toddler health, maternal health, and environmental determinants. Secondary data from 2020–2024 on low birth weight, immunization, malnutrition, exclusive breastfeeding, maternal chronic energy deficiency, iron and folic acid supplement distribution, sanitation, and safe drinking water access were compiled from West Sumatra Provincial Health Office and Statistics Indonesia, and validated through consultation with five stakeholder institutions. Causal Loop Diagrams mapped feedback relationships among determinants and were translated into Stock Flow Diagrams using Powersim Studio 10. The model was validated through structural verification, …

Enhanced Osseointegration Of Functionally Graded Co˗Cr˗Mo˗Ti/Ha Implants: In Vitro And In Vivo Study In A Rabbit Model, Afrah M. Al Hussainey, Randa Kamel Hussain, Aseel Mustafa Abdul Majeed

Karbala International Journal of Modern Science

    The present investigation aims to evaluate the effects of acid and laser surface treatments on the surface characteristics, biocompatibility, and osseointegration of functionally graded implants fabricated from a Co–Cr–Mo–Ti/HA alloy. The implant surfaces were modified using either an Nd: YAG laser or hydrochloric acid (HCl), while untreated implants served as controls. Atomic force microscopy (AFM) showed that the acid-treated surface exhibited the highest mean surface roughness (Sa) of 58.10 ± 0.24 nm compared to the laser-treated surface (42.64 ± 0.83 nm) and the untreated surface (37.73 ± 0.89 nm). The MTT assay also demonstrated a favourable cellular response on the …

Oregon State Rank Assessment For Schweinitz's Cyperus (Cyperus Schweinitzii), Nora Dunkirk

Institute for Natural Resources Publications

Oregon state conservation status assessment for Schweinitz's cyperus (Cyperus schweinitzii) using NatureServe methodology, 2026.

Nasa’S Ecostress Satellite Reveals Widespread Midday Depression In Ecosystem Evapotranspiration, Jingyi Bu, Jingfeng Xiao, Joshua B. Fisher, Yiqi Luo

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Plants often exhibit a midday depression in water use (i.e., transpiration), reflecting a constraint on their ability to sustain maximum water transport, which may occur at the cost of reduced photosynthesis. Eddy covariance observations and geostationary satellites cannot quantify this widespread phenomenon globally while resolving fine-scale spatial variability. Using evapotranspiration measurements from the ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) and machine learning, we quantify the global distribution of midday depression in evapotranspiration. Midday depression primarily occurs during peak-growing seasons in temperate zones and dry periods in the tropics, with a morning shift of the peak evapotranspiration time …

Oregon State Rank Assessment For Koehler's Rockcress (Boechera Koehleri), Lindsey K. Wise, Gabriel Campbell

Institute for Natural Resources Publications

Oregon state conservation status assessment for Koehler's rockcress (Boechera koehleri) using NatureServe methodology, 2026.

Three-Dimensional Cell And Nuclear Geometries Inform Tissue Level Fluid Mechanics During Epithelial Remodeling, Liam Joseph Russell

Electronic Theses and Dissertations

During epithelial remodeling, mechanical and molecular programs must coordinate to drive the cell shape changes that enable new tissue topologies. Dynamic morphogenesis requires epithelia to preferentially exhibit solid- or fluidlike properties depending on developmental and biophysical constraints. Convergent extension in the Drosophila germband epithelium is one such remodeling event, during which the lateral ectoderm lengthens by two-fold along the primary body axis while concomitantly shortening orthogonally. This process is an incredibly dynamic and attractable system for studying tissue morphogenesis mechanics in vivo.

Germband extension is driven by oriented cell intercalation through T1 transitions, where cells directionally interdigitate with one another …

Pathways For Coordinating High-Quality Exploitation Of Marine Resources And High-Level Protection Of Marine Ecosystems, Jianping Yin, Peimin Duan, Si Zhang

Bulletin of Chinese Academy of Sciences (Chinese Version)

The ocean serves as a vital strategic space and a reservoir of resources essential for human survival and development, offering robust support for socioeconomic progress. Simultaneously, as a critical component of the Earth’s ecological environment, the ocean plays a pivotal role in regulating climate change, conserving biodiversity, and maintaining ecological balance. In recent years, China has continuously intensified the exploitation and utilization of marine resources, with the growth of the marine economy injecting blue momentum into the nation’s development. Nevertheless, the long-term, high-intensity exploitation of offshore resources, coupled with the ongoing advancement into deep-sea resource development, has led to frequent …

Developing Field And Spaceflight Microscopy, Nikki Johnston

Dissertations and Theses

Designing for spaceflight favors the reduction of unnecessary features and cost-cutting, whether thisbe computation, hardware, or procedure. Resources are spent toward fortification and mission success over convenience. Such design goals paired with the relatively smaller budgets of academia lead us to do as much as we can in-house and use open-source as much as we can without compromising mission success. We also believe that thoroughly testing technology in extreme environments on earth is necessary for the success of a flight instrument. We focus on microscopy for life detection. I have spent my time here learning methods of hand-building microscopes to …

Rickettsia Africae Discovered In A Short-Term Urban Traveller To South Africa: A Case Report, Zunairah Sikder

Binghamton University Undergraduate Journal

Rickettsia Africae is a pathogen that causes African tick-bite fever (ATBF). Transmission typically occurs from ticks within the Central and South African regions. Previous studies suggested that ATBF is not uncommon amongst travelers to rural sub-Saharan Africa, especially during the rainy months of November through April. However, this case report highlights a woman who contracted ATBF in novel conditions. The 70-year-old woman reported travelling strictly to and from the local church and hotel for her four-day stay in July. After returning to America, the patient experienced extreme irritation on her arm, as well as complaints of headaches. She presented to …

A Message From The Managing Editor, Carissa Bayack

Binghamton University Undergraduate Journal

A message from the 2025-2026 Managing Editor of the Binghamton University Undergraduate Journal, Carissa Bayack.

The Effectiveness Of Bacillus-Coated Npk Fertilizer On Broccoli Growth, Nutrient Status, Rhizosphere Bacillus Population, Yield, And Flower Quality, Betty Natalie Fitriatin, Rara Rahmatika Risanti, Reginawanti Hindersah, Fasa Aditya Hanindipto, Gita Bina Nugraha

Jurnal Kultivasi

Efforts to increase the availability of macronutrients in soil have relied on inorganic fertilization, particularly NPK fertilizers. However, global challenges in the fertilizer raw material supply chain, including price fluctuations and availability, are driving the need for more efficient and sustainable fertilizer alternatives. The field experiment was conducted in Baruajak, Lembang District, West Java, Indonesia, to evaluate the effectiveness of Bacillus-coated NPK fertilizer on broccoli (Brassica oleracea var. italica) growth, nutrient status, rhizosphere Bacillus population, yield, and flower quality. The experiment used a randomized complete block design with 15 fertilizer treatments and three replications. Treatments consisted of two coated NPK …

The Effect Of Silica-Enriched Rice Husk Biochar And Npk Fertilizer On Soil Total Nitrogen, Nitrogen Uptake, And Yield Of Lowland Rice, Emma Trinurani Sofyan, Oviyanti Mulyani, Ania Citraresmini, Meddy Rachmadi, Kharmelia Sandra Livia

Jurnal Kultivasi

Rice production in Indonesia increasingly relies on agricultural intensification, which can accelerate soil degradation and reduce fertilizer-use efficiency. Therefore, sustainable soil management is needed to maintain soil fertility. Silica-enriched rice husk biochar (biochar-silica) is a promising soil amendment because it improves soil properties and nutrient retention. This study evaluated the effects of biochar-silica and NPK fertilization on soil total nitrogen, nitrogen uptake, and yield of lowland rice (Oryza sativa L.). The experiment was conducted from September 2025 to January 2026 using a two-factor randomized block design with nine treatment combinations and three replications. The treatment consisted of three levels of …

Effects Of Ab Mix Hydroponic Solution And Ameliorant Mixtures On Cayenne Pepper Growth And Yield In An Inceptisols, Tien Turmuktini, Betty Natalie Fitriatin, Tualar Simarmata, Firda Widayanti, Nuryanti, Lia Amalia, Elly Roosma Ria, Linlin Parlinah

Jurnal Kultivasi

Cayenne pepper (Capsicum frustescens L.) cultivation faces several problems, including acidic pH and inadequate nutrient management. These problems can be addressed by using a mixture of various ameliorants and AB mix nutrient solutions. This study aimed to determine the effect of ameliorant mixture dosage and AB mix solution concentration on soil chemical properties, growth, and yield of cayenne pepper. The experiment used a randomized block design, consisting of two factors: nutrient solution concentration and ameliorant dosage. The factor of nutrient solution concentration consisted of four levels, i.e., 700, 1000, 1300, and 1600 ppm, while the factor of ameliorant dosage also …

Land-Use Transitions And Carbon Emissions Of Aquaculture Expansion In The Brazilian Amazon, Felipe S. Pacheco, Sebastian A. Heilpern, Rafael M. Almeida, Suresh A. Sethi, Marcela Miranda, Nicholas Ray, Laura Greenstreet, Joshua Fan, Brendan H. Rappazzo, Marcelo Gomes Da Silva

School of Earth, Environmental, & Marine Sciences Faculty Publications

Accounting for land-use change underlying food sector expansion is critical for conserving ecosystem integrity. This challenge is particularly acute in the Amazon, where the conversion of forests for food production is pronounced and has broad implications for global biodiversity and the cycling of water and carbon. Here, we analyze land-use transitions associated with aquaculture development in the Brazilian Amazon. We found that a 450-fold increase in aquaculture pond area from 1985 to 2022 occurred primarily on pasturelands (87%) but also included wetland conversion (4%) and deforestation (5%). Notably, continued growth can be sustained within already altered landscapes: In Rondônia, the …

Synthesis, Utilization And Biological Evaluation Of Β-Hairpin Peptides As Inhibitors Of Immune Checkpoints, Sarah Naylon

Electronic Theses and Dissertations 2020 - Present

Peptide therapeutics have emerged as promising alternatives to monoclonal antibodies because of their smaller size, improved tissue penetration, and synthetic versatility. Yet their broader application is often limited by poor structural stability, rapid clearance, and reduced target residence times. This dissertation describes the design, synthesis, structural characterization, and biological evaluation of β-hairpin peptides as inhibitors of immune checkpoints and as peptide vaccine scaffolds while developing strategies to overcome these limitations. At first a series of antibody-derived β-hairpin peptides (mimics of complementary determining region heavy-chain 3: CDR-H3s) as covalent inhibitors of the PD-1/PD-L1 immune checkpoint were investigated. Electrophilic warheads were incorporated …

Palmnet: Confidence-Calibrated Edge-Cloud Ai For Field Diagnosis Of Date Palm Diseases, Muntadher Kareem, Raed Majeed

Karbala International Journal of Modern Science

Date palm (Phoenix dactylifera L.) is a cornerstone crop for Iraq and the wider MENA region, yet reliable in-field diagnosis of leaf disorders remains slow, labour-intensive, and constrained by a limited pool of agronomists. This paper presents PalmNet, a full-stack diagnostic system that classifies nine leaf conditions through a calibrated edge-cloud framework. The system is developed and evaluated on a public dataset of 3,089 field images spanning the nine classes, using a 70/15/15 stratified split. A ShuffleNetV2 student network, distilled from a ConvNeXt-Tiny teacher, is deployed on two complementary edge endpoints: a Raspberry Pi Zero 2 W field station …

Modeling The Clonal Rosette Composition Of A Bromeliaceae Genet: A Combinatorial Approach, Layla K. Lammers, Erin N. Bodine

Spora: A Journal of Biomathematics

Bromeliaceae, a neo-tropical plant family encompassing over 3,000 species, exhibit two modes of reproduction: sexual reproduction via flowers and seeds, and asexual reproduction via genetically identical clonal rosettes. The vegetative bodies of bromeliads form rosettes with new leaves emerging from the center and clonal rosettes emerging above a single leaf in the rosette, resulting in a genetic individual consisting of a seed-grown rosette and multiple iterations of clonal rosettes. This research develops a combinatorial model of probability that a single genetic individual will include at least n clonal rosettes when a single rosette can produce at most 1 or 2 …

Long-Term Effects Of Harvesting Disturbance And Site Preparation On Soil Properties And Tree Growth In A Loblolly Pine (Pinus Taeda) Forest, Kyle M. Caccamesi

LSU Master's Theses

Productivity decline between rotations has long been a concern in intensively managed forest plantations. Research done over the last century has provided greater clarity on why this phenomenon occurs. The objective of this research was to observe long-term soil and tree growth characteristics that are likely to be influenced by operational harvesting activities. The experiment was conducted in Washington Parish, Louisiana on a site dominated by Ruston soil series, a well-drained, fine loamy, siliceous and thermic typic Paleudult. A randomized complete block design with 2 x 2 x 2 factorial treatments was used. The treatment factors were harvesting method, fertilization, …

Oregon State Rank Assessment For Deer-Cabbage (Nephrophyllidium Crista-Galli), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Deer-cabbage (Nephrophyllidium crista-galli) using NatureServe methodology, 2026.

Modeling Population Growth With Logistic And Modified Logistic Equations, Mihil Dimpal Patel

Discovery Day - Daytona Beach

Population growth models are essential tools for understanding how biological populations change over time under environmental constraints. This study examines population dynamics by comparing the classical exponential growth model with the logistic growth model. While exponential growth assumes unlimited resources and results in unbounded population increase, the logistic model incorporates a carrying capacity that limits growth as resources become scarce. To better represent real-world conditions, the logistic model is extended by introducing modifications such as harvesting terms and time-varying carrying capacities, which account for external removal of individuals and changing environmental limits. The equilibria of these models are determined, and …

Phenotypic And Biochemical Responses Of High-Yield Tomato Varieties To Salinity And Drought Stress, Shahida Ferdousee, Myung Hwangbo, Md Sakil Arman, Muhammad Abul Kalam Azad, Ajit Ghosh, Jongsun Kim

School of Earth, Environmental, & Marine Sciences Faculty Publications

Abiotic stresses can influence plant growth and productivity by causing physiological, biochemical, molecular, and morphological changes. Salinity and drought are increasing in frequency and intensity because of climate change. Therefore, this study assessed four high-yield tomato cultivars under 150 mM NaCl and 260 mM mannitol treatments to characterize physiological (i.e., chlorophyll level, root/shoot length, and relative water content) and biochemical responses (i.e., GLY I/II and DLDH enzyme activities, proline, and hydrogen peroxide). Results indicated that the four BARI tomato varieties showed genotype- and treatment-specific physiological and biochemical responses rather than a single uniform tolerance pattern. BARI tomato 2 maintained relatively …

Adaptive Phishing Url Detection Using Hybrid Fuzzy C-Means Clustering And Xgboost, Muntadher Mohammed Kareem, Rawaa I. Farhan

Karbala International Journal of Modern Science

Phishing attacks continue to evolve in sophistication, rendering static detection methods increasingly ineffective. Existing URL-based approaches suffer from limited adaptability to emerging phishing patterns, mislabeled training data, and insufficient validation protocols. This paper proposes a hybrid phishing URL detection system that integrates Fuzzy C-Means (FCM) clustering with XGBoost classification, enhanced by a novel Micro Adaptive Feature Extractor (MAFE). The system employs a multi-stage pipeline: feature engineering generating 36 statistical and interaction features, MAFE producing 15 adaptive features through class-aware dynamic weighting, micro-pattern detection, and entropy analysis, and FCM with K=2 clusters providing soft membership features to XGBoost. A two-pass confidence-based …

Dry After-Ripening Increases Germination Of Critically Imperilled Physaria Thamnophila (Zapata Bladderpod), Christopher A. Gabler, Jerald T. Garrett

School of Earth, Environmental, & Marine Sciences Faculty Publications

Effective endangered plant conservation and recovery require empirical knowledge of seed dormancy release and responses to post-collection handling, yet such information is lacking for many rare taxa. Physaria thamnophila (Zapata bladderpod; Brassicaceae), a critically imperilled (G1) species endemic to southern Texas, USA, is poorly studied, and basic questions regarding seed storage and germination remain unresolved. We evaluated the effects of short-term cool-storage duration (14–180 d), storage temperature (refrigeration vs. freezing), dry after-ripening and maternal plant identity on germination probability and timing in P. thamnophila. Dry after-ripening and increased cool-storage duration consistently increased germination and shortened germination time, whereas storage temperature …

Ammonium Phosphate Fertilizers Are A More Effective Phosphorus Source Than Superphosphate For Wheat Grown On Acidic Gravelly Soils, Craig A. Scanlan, Raj Malik, Fien Degryse, Andrew Van Burgel, Mike J. Mclaughlin

Grain and Other Field Crops Research Articles

Selecting the most effective phosphorus (P) fertilizer source is essential for maximizing crop yields. However, there is little information to guide the choice between the widely used soluble granular sources: ammonium phosphates and superphosphates. The aims of this study were to examine whether there are differences in wheat (Triticum aestivum L.) grain yield response to ammonium phosphate and superphosphate fertilizers in field conditions, and if these differences relate to diffusion of P from fertilizer granules. Two field experiments were conducted on acidic gravelly soils in Western Australia where P deficiency occurs to compare wheat growth response to P applied …

Influence Of Transboundary Wildfire Smoke On Fine Particulate Matter Concentrations At South Texas Border Schools, Sai Deepak Pinakana, Kabir Bahadur Shah, Owen Temby, Dawid K. Wladyka, Juan L. Gonzalez, Md Saydur Rahman, Katarzyna Sepielak, Amit U. Raysoni

School of Earth, Environmental, & Marine Sciences Faculty Publications

Exposure to air pollutants in indoor and outdoor school environments poses significant health risks to children due to their heightened vulnerability. Increasing wildfire frequency has intensified transboundary smoke transport, with border communities among the first to experience associated air quality impacts. While the impacts of wildfires on air quality are increasingly recognized through satellite observations and modeling, ground-based observations remain scarce in under-monitored regions. Low-cost air sensors were deployed across schools in the Roma and Rio Grande City areas of Starr County, along the U.S.–Mexico border, for 146-days from November 2023 to April 2024. The raw sensor measurements were corrected …

Changes In Water Quality And Microbiota Over Two Years In Florida Hard Clam (Mercenaria Mercenaria) Hatcheries, Bonnie Getter

Electronic Theses and Dissertations 2020 - Present

This thesis characterized the water quality and bacterial communities in nine hard clam hatcheries over two production years through weekly or biweekly water quality and chemistry monitoring, monthly bacterial plating in the second year of production, and select 16S microbiome sampling at select hatcheries to address production bottlenecks and support the reliable production of high-quality seed for Florida’s growing hard clam aquaculture industry. Logistic regression models showed that water source was distinguished by pH, salinity, alkalinity, and nitrite, whereas geographic location was distinguished by temperature, salinity, nitrate, and calcium; temperature, dissolved oxygen, salinity, and alkalinity distinguished seasons. Vibrio bacteria differed …

Evaluating Fish Assemblages At An Early-Stage Living Shoreline Project In Lake Pontchartrain, Collin Glaser

LSU New Orleans Theses and Dissertations

Living shorelines are an increasingly popular restoration approach for reducing erosion while improving habitat quality. The Bucktown Living Shoreline Project is a large-scale restoration effort along the southern shore of Lake Pontchartrain aimed at enhancing coastal resilience and restoring historic marsh habitat. This thesis evaluated early fish assemblage response to the Bucktown Living Shoreline Project over one year and placed those assemblages within the broader historical context of Lake Pontchartrain. Monthly sampling was conducted at the living shoreline and an adjacent riprap control site using seines, cast nets, and minnow traps. Fish assemblage structure was not significantly different between sites. …

Crystal Structure Of New Polar Rare Earth Borates Na2.62Ln2.12(Bo3)3 (Ln = Pr, Nd, Sm) Containing Isolated Bo3 Groups, Alevtina A. Maksimova, Mark D. Smith, Hans Conrad Zur Loye

Faculty Publications

Three new rare earth borates, Na2.62Ln2.12(BO3)3 (Ln = Pr, Nd, Sm), were synthesized via a high-temperature solution reaction using a BaCO3–H3BO3–NaF flux and structurally characterized by single-crystal X-ray diffraction analysis. The compounds crystallize in the orthorhombic space group Amm2 with lattice parameters a = 5.0985(10) Å, b = 11.180(2) Å, c = 7.1483(14) Å, and a unit cell volume of 407.48(14) ų (Z = 2) for Na2.62Pr2.12(BO3)3, a = 5.0983(10) Å, b = 11.181(2) Å, c = 7.1491(14) Å, and a unit cell volume of 407.51(14) ų (Z = 2) for Na2.62Nd2.12(BO3)3, and a = 5.08630(10) Å, b …

Single Crystal Growth Of The Orthoborate Nabalu(Bo3)2 And Optical Investigation Of Eu3+ And Tb3+ Doped Nabalu(Bo3)2, Alevtina A. Maksimova, Mark D. Smith, Lakshani W. Masachchi, Hans Conrad Zur Loye

Faculty Publications

Sodium barium lutetium borate NaBaLu(BO₃)₂ crystals were synthesized using a high-temperature solution method. The crystal structure of this layered orthoborate is described and corresponds to that of an extensive orthoborates family, NaBaR(BO₃)₂ (R = Sc, Y, Yb, Tb – Lu). NaBaLu(BO₃)₂ was doped by Eu³⁺ and Tb³⁺ to explore its performance as a host material and to investigate the luminescent properties of the Eu³⁺ and Tb³⁺ doped materials. The emission spectra of the NaBaLu(BO₃)₂:Ln (Ln = Eu, Tb) crystals are presented. The most …

Temperature And Salinity Effects On The Physiology Of Bullfrog Tadpoles (Lithobates Catesbeianus) From A Suburban Temperate Wetland, Angela Brown

Theses, Dissertations and Culminating Projects

One of the most robust amphibians is the American Bullfrog, Lithobates catesbeianus, which is a widespread species that is invasive worldwide, and is broadly tolerant of a range of environmental conditions. Despite this tolerance, survival and performance of adult L. catesbeianus can be negatively affected by increasing temperatures and salinity resulting from anthropogenic impacts, such as climate change and road salts. This study focuses on the effects of acute salinity exposure (mimicking road salt influx into a pond) on L. catesbeianus tadpoles at different larval stages. Increased salinity was predicted to negatively affect two physiological performance measures. Critical maximum temperature …