Life Sciences Commons^™

Factors Influencing Plant Community Structure And Composition Of Restored Tamaulipan Thornscrub Forests, Jerald T. Garrett, Audrey J. Hicks, Christopher A. Gabler

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Lower Rio Grande Valley (LRGV) of Texas is a biodiversity hotspot due to its high alpha, beta, and gamma diversity and high regional endemism, which are at high risk of degradation. The region has lost 95% of its native thornforest habitat primarily due to agricultural and urban expansion. This study aims to evaluate the current vegetative structure and composition of restored thornforest sites located in the LRGV to identify restoration methods and site characteristics that affect forest restoration outcomes. Twelve restored thornforest sites were selected for this study that varied in time since restoration, patch size, degree of isolation, …

Day-Night Shifts In Water-Soluble Ions Of Size-Resolved Aerosols Before And After The Covid-19 Lockdown In A Coastal Megacity: Metro Manila, Philippines, Grace Betito, Paola Angela Bañaga, Rachel A. Braun, Maria Obiminda Cambaliza, Melliza Templonuevo Cruz, Alexander B. Macdonald, James Bernard Simpas, Connor Stahl, Armin Sooroshian

SOSE Affiliate: Manila Observatory

The COVID-19 pandemic-driven lockdowns offer a unique opportunity to examine how reductions in anthropogenic emissions impacted atmospheric aerosol composition in urban environments. This study investigates the day-night variability of size-resolved water-soluble ions in ambient particulate matter (PM) collected in Metro Manila before (November 2019–February 2020) and after (November 2020–February 2021) lockdown implementation. Using tandem Micro-Orifice Uniform Deposit Impactors (MOUDIs), aerosol samples were collected during daytime (06:00–18:00) and nighttime (18:00–06:00) periods and analyzed for key ionic species (sulfate, ammonium, nitrate, oxalate, sodium, chloride, calcium, and magnesium) via ion chromatography. Submicrometer water-soluble mass declined post-lockdown, particularly during daytime, reflecting suppressed secondary formation …

Plant Biomass (Dry) Per Square Meter, Johan Du Toit, Shantell Garrett

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Results of plant biomass clippings (dry mass / square meter) conducted in the foothills of the Henry Mountains, south-central Utah, over 2012-2022.

Mechanistic Distinction Between Oxidative And Chlorination Transformations Of Chloroperoxidase From Caldariomyces Fumago Demonstrated By Dye Decolorization, Norman Paz-Ramirez, Jacob Redwinski, Matthew A. Cranswick, Kyle A. Grice, Kari Stone

Chemistry Department Faculty Articles

Effluents from the textile industry, particularly those containing synthetic azo dyes, poses a significant environmental threat, necessitating the development of more effective and sustainable pollutant removal methods. Traditional dye removal techniques often fall short in efficiency and environmental impact, prompting the exploration of enzymatic degradation as a promising alternative. This study focuses on chloroperoxidase, a natural biocatalyst recognized for its ability to oxidize synthetic dyes into less harmful products. By exploring the mechanistic distinction between chlorination and oxidative processes, we investigate the enzyme’s specific degradation pathways for azo dyes and the resulting by-products. Utilizing analytical techniques, including liquid chromatography/mass spectrometry …

Chemical Analyses Of Grass Samples, Johan Du Toit, Shantell Garrett

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Results of chemical analyses of grass samples collected in the foothills of the Henry Mountains, south-central Utah, in the fall of 2021.

The Effects Of Plastic Mulch And Irrigation On Hemp Chemistry And Leaf Endophytes, Allison Rietman, Connor Morozumi, Robert C. Pearce, Natalie Christian

Journal of Agricultural Hemp Research

As an emerging crop, cultivation techniques for industrial hemp (Cannabis sativa L.) are still being developed and optimized. For example, irrigation and plastic mulching are some management practices that have been touted for their benefits in improving crop quality. Both techniques ensure ample water availability, which has often been attributed to improving hemp cannabinoid and terpene composition. In this study, we examined how supplemental irrigation implemented in a plastic mulch system influenced the cannabinoid and terpene profiles of one cultivar of CBD hemp, Lifter. We grew industrial hemp in field with plastic mulch and applied regular irrigation to one group …

A Multidecadal Analysis Of Groundwater Level And Streamflow Decline In Southern Forest Catchments, Western Australia, Richard J. George, Rose-Anne Bell, W. Lachlan Mccaw, Gregory Paul Raper

Natural Resources Research Articles

Previous analysis of hydrological data in the eucalypt dominated forests of Western Australia’s Darling Ranges show that reduced winter rainfall over the last 50 years has lowered groundwater levels and diminished streamflow by up to 70%. Consequently, climate-independent reverse osmosis seawater desalination and groundwater resources now supply Perth and nearby regional areas, as runoff from forested catchments is no longer sufficient or reliable. In the high rainfall (~1200 mm/yr) mixed forest areas dominated by Eucalyptus diversicolor (karri) and Eucalyptus marginata (jarrah) 200 km to the south of Perth (the ‘Southern Forest’), similar analysis of climate impacts on watertables has not …

Fisheries Research Report No. 354: Recreational Fishing For Abalone In Western Australia In 2024/2025 - Estimates Of Participation, Effort And Catch, Claire B. Smallwood, Karina L. Ryan, Lachlan W. Strain

Fisheries Research Reports

The Western Australian Recreational Abalone Fishery (RAF) operates in shallow coastal waters as a hand collection fishery while wading or diving. Three species of abalone are allowed to be caught. Roe’s abalone (Haliotis roei) are generally collected while wading from the shore in accessible nearshore reef complexes along the West and South Coast Bioregions. Greenlip abalone (H. laevigata) and Brownlip abalone (H. conicopora) are collected while wading (including snorkelling and freediving) and diving (using compressed air) predominantly along the South Coast Bioregion.

Recreational fishing for the three abalone species is licensed and highly regulated, especially in the Western Zone (which …

Carbon Footprint Of Carrots In Western Australia, Christophe D'Abbadie, Saloomeh Akbari, Sang Ravindran

Horticulture research reports

This report presents the findings of a comprehensive carbon accounting study conducted on carrot production in the Myalup area of Western Australia.

The study reveals that carrot emissions are approximately 81 kg CO2e per tonne of carrot sold from the April harvest and 76 kg CO2e per tonne from the October harvest, when using rejected carrots for other economic uses. These figures represent competitive emissions intensities compared to international benchmarks.

Key findings include:

• Yield improvement is the primary driver for emissions reduction: Increasing productivity, without proportional input increases, offers the most effective pathway to lower emissions’ intensity while improving economic …

Assessing Expected Cover Of Invasive Flora Species Near Corridor Features By Distance, Joshua G. Logan

Theses

Fragmentation of landscapes has been a growing topic of interest within scientific literature over the past several decades, as the way we as humans affect our planet becomes more apparent as the years go on. As humans, we have shaped the land and what it contains in immeasurable ways, erasing or forever altering entire natural ecosystems. Chief among the drivers altering these ecosystems is the fragmentation of landscapes, which can have all kinds of effects on natural ecosystems, from limiting nutrient transport to providing easier access for invasives to permeate throughout a landscape. Corridors are significant areas of interest regarding …

Persistent Chemicals In Particulate Matter (Pm) Near A Hazardous Waste Thermal Treatment Facility, Chuqi Guo, Martine E. Mathieu-Campbell, Thomas Blanchard, Lavrent Khachatryan, Md Abdullah Al-Mamun, Qingzhao Yu, Myron Lard, Oluwafeyikemi Ogunmusi, Brenda Vallee, Wilma Subra, Iriel Edwards, David Malone, Slawo Lomnicki, Stephania A. Cormier, Jennifer Richmond-Bryant

School of Public Health Faculty Publications

Colfax, an overburdened community in central Louisiana, hosts the last commercially-operated open-burn/open-detonation (OB/OD) hazardous waste thermal treatment facility in the United States. Until December 2023 when their permit disallowed OB/OD, the facility processed military waste, fireworks, propellants, soils excavated from Superfund sites, and other hazardous materials. This community-engaged study measured ambient fine particulate matter (PM2.5), environmentally persistent free radicals (EPFRs), polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), and metals using two high-volume PM2.5 samplers deployed 1.2 mi and 9.0 mi from the facility from April, 2022 through February, 2023. Elevated PM2.5 concentrations were recorded at both sites during spring and summer 2022. …

Assessing The Effectiveness Of Bridge Grate And Pipe Cattle Guard Designed To Mitigate Ocelot Road Mortality On Texas State Highway, Rupesh Maharjan, John H. Young Jr., Kevin W. Ryer, Md. Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

The mitigated and fenced section of State Highway 100, extending from Laguna Vista to Los Fresnos, includes five wildlife crossing structures and 16 modified cattle guards (also called wildlife guards) installed to mitigate ocelot road mortality. Bridge grate and pipe wildlife guards were deployed at vehicle entries, and we evaluated their effectiveness in preventing meso-carnivores and ungulates from entering the roadway through the fence gaps from April 2020 to 2024. Wildlife guards collectively were >82% effective in repelling ungulate attempts to enter the roadway, while only 16.64% of meso-carnivore attempts were repelled. The pipe wildlife guard (PWG) design repelled 86.79% …

A Feature Engineering Technique For Enhancing The Generalization Of Machine Learning Models In Estimating Crop Evapotranspiration, Gaku Yokoyama, Sohta Harigai, Shigehiro Kubota, Koichi Nomura, Gregory R. Goldsmith, Daisuke Yasutake, Tomoyoshi Hirota, Masaharu Kitano

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Accurate and precise estimation of evapotranspiration (ET) is crucial for understanding the terrestrial carbon, water, and energy cycles. While process-based models of ET, such as the Penman–Monteith model offer robust generalization capabilities, they are limited by the need for detailed parameters (e.g., stomatal conductance,) that are challenging to measure continuously. On the other hand, machine learning models can estimate ET by capturing relationships between ET and environmental variables without experimentally measuring model parameters. However, machine learning models face the challenge of limited generalizability. This issue is particularly significant given the uncertainty introduced by changing climatic …

Western Australian And South Australian Grain Enterprise Emission Intensities And Gross Margins: A Review, Christophe D'Abbadie, Ross Kingwell

Farm Systems and Economics research articles

Drawing on various datasets, crop enterprise emission intensities and gross margins are reported for the main broadacre crops grown in Western Australia and South Australia. Values are reported for various rainfall regions and across time, and for different farm performance groupings. As a generalisation, in each region, wheat and canola production display marked increases in emissions intensity across the study period whilst legume crops’ emission intensities increase far less. Wheat crops display upward emission intensity trajectories across time whilst displaying different rates of increase in emissions intensity according to regional rainfall. Canola demonstrates higher emissions intensities per tonne compared to …

Early-Life Exposure To Organic Chemical Pollutants As Assessed In Primary Teeth And Cardiometabolic Risk In Mexican American Children: A Pilot Study, Vidya S. Farook, Feroz Akhtar, Rector Arya, Alice Yau, Srinivas Mummidi, Juan Lopez Alvarenga, Alvaro Diaz-Badillo, Roy G. Resendez, John Blangero

Human Genetics Publications

Early-life exposure to organic chemicals (OCs) may influence childhood obesity and associated cardiometabolic risk. These conditions have been shown to disproportionately affect minority populations such as Mexican Americans (MAs). However, information on the impact of organic chemicals on cardiometabolic risk in MA children is limited. Therefore, we conducted a pilot study to assess the extent to which exposure to organic chemicals influences cardiometabolic traits (CMTs) in MA children. We recalled 25 children from a previous study and collected 25 primary teeth from them. Chemical analyses of the teeth were performed using established protocols. Target analytes included acetaminophen (APAP); 3,5,6-trichloro-2-pyridinol (TCPy), …

Unraveling Crop Nitrogen-Water Dynamics With Hyperspectral-Thermal Sensing In Northern Central Valley, California, Shahryar Fazli, Surendra Maharjan, Wenzhao Li, Joshua B. Fisher, Rejoice Thomas, Fernando Romero Galvan, Gabriela Shirkey, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Ensuring global food security in the face of climate change requires optimizing crop water use and nutrient management. This study investigates the relationship between canopy nitrogen (N) and evapotranspiration (ET) across sunflower, rice, walnut, alfalfa, and plum crops using advanced remote sensing technologies. High-resolution hyperspectral data from NASAs Earth Surface Mineral Dust Source Investigation (EMIT) and thermal multispectral data from the Landsat-based OpenET system were analyzed over 1,135 km² in California. Regression analysis revealed strong spatial association between canopy N and ET for sunflower (R² = 0.82), rice (R² = 0.71), and walnut (R² = 0.68), …

A Case Study Of Long-Term Disease Burden In A Rural Community Near An Open Burn Facility, Arundhati Bakshi, Liana Baconguis, Md Abdullah Al-Mamun, Qingzhao Yu, Jennifer Richmond-Bryant, Stephania A. Cormier

School of Public Health Faculty Publications

Open burning and open detonation (OB/OD) of explosive and hazardous wastes creates various toxic waste products, including particulate matter, that is released into the atmosphere and capable of generating significant health impacts upon exposure. The last commercially run OB/OD thermal treatment facility in operation in the United States is located near the rural community of Colfax in central Louisiana. To evaluate the community’s concerns about the potential health impacts from air pollution due to the facility’s regular open burning of explosive and hazardous wastes, we examined the disease burden in Colfax compared to the surrounding parish and state. In a …

Reeds Run Amok: A Practical Guide To Managing Phragmites-Invaded Wetlands, Christine Rohal, Keith Hambrecht, Chad Cranney, Karin M. Kettenring

All Current Publications

Phragmites australis (common reed or simply “phragmites”) is a tall-statured, highly productive wetland grass. It spreads rapidly, often displacing native plants and degrading critical habitat for shorebirds and waterfowl by reducing the availability of nesting, loafing, and foraging areas. Phragmites also consumes large amounts of water, adding pressure to already scarce water resources. Additionally, the accumulation of standing dead biomass can be a fire hazard. Phragmites makes large areas of wetlands inaccessible to both wildlife and humans. This guide provides guidance on managing phragmites.

Warming Induces Unexpectedly High Soil Respiration In A Wet Tropical Forest, Tana E. Wood, Colin Tucker, Aura M. Alonso-Rodríguez, M. Isabel Loza, Iana F. Grullón-Penkova, Molly A. Cavaleri, Christine S. O'Connell, Sasha C. Reed

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Tropical forests are a dominant regulator of the global carbon cycle, exchanging more carbon dioxide with the atmosphere than any other terrestrial biome. Climate models predict unprecedented climatic warming in tropical regions in the coming decades; however, in situ field warming studies are severely lacking in tropical forests. Here we present results from an in situ warming experiment in Puerto Rico, where soil respiration responses to ⁺4 ^oC warming were assessed half-hourly for a year. Soil respiration rates were 42-204% higher in warmed relative to ambient plots, representing some of the highest soil respiration rates reported for any …

In Memoriam: Holmes Rolston Iii, Editorial Board

The International Journal of Ecopsychology (IJE)

No abstract provided.

Adaptive Water Body Detection: Integrating Deep Learning, Normalised Difference Water Index, And Vector Data For Farm Dam Water Monitoring With Omniwatermask, Nicholas J. Wright, John M A Duncan, Nik Callow, Sally E. Thompson, Richard J. George

Natural Resources Research Articles

Farm dams are important water security features supporting both agricultural production and the natural environment. In Australia alone, over two million farm dams provide the water resources underpinning rural and regional primary industries with an annual export value of $80 billion. However, monitoring these water bodies to understand water security and vulnerability is challenging, primarily because of their large quantity, size and highly variable spectral signatures. These characteristics result in difficulty determining thresholds for index-based water detection methods and add to the difficulty of creating adequate training datasets for deep learning methods. We present an adaptive approach named OmniWaterMask (OWM) …

Fisheries Science Update - South Coast Demersal Scalefish Resource - September 2025, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The Department of Primary Industries and Regional Development (DPIRD) monitors the status of Western Australia’s demersal scalefish resources by undertaking regular stock assessments on indicator species.

This summary provides key outcomes of the 2024 assessment of the South Coast Demersal Scalefish Resource (Fisheries Research Report No. 339).

Fisheries Science Update - Kimberley Demersal Scalefish Resource - September 2025, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The Department of Primary Industries and Regional Development (DPIRD) monitors the status of Western Australia’s demersal scalefish resources by undertaking regular stock assessments on indicator species.

This summary provides key outcomes of the 2025 assessment of the Kimberley Demersal Scalefish Resource (Resource Assessment Report No. 4).

Resource Assessment Report No. 05: West Coast Deep Sea Crustacean Resource 2024 Assessment, Emma-Jade Tuffley, Simon De Lestang

Resource Assessment Reports

The West Coast Deep Sea Crustacean resource consists of crystal crab (snow) (Chaceon albus), champagne crab (spiny) (Hypothalassia acerba) and giant crab (Pseudocarcinus gigas). The resource is mainly accessed by the commercial West Coast Deep Sea Crustacean Managed Fishery (WCDSCMF), which primarily targets crystal crabs. The West Coast Rock Lobster Managed Fishery (WCRLMF) also retains a small amount of champagne crabs as byproduct of deep-water rock lobster fishing. The WCDSCMF is a pot-based fishery using baited pots operated in a long-line formation in shelf edge waters ( > 150 m in depth) off the West …

Resource Assessment Report No. 03: Gascoyne Demersal Scalefish Resource 2024 Assessment, Emily A. Fisher, Rachel Marks, Sybrand A. Hesp, Ainslie Denham, Gary Jackson, David V. Fairclough

Resource Assessment Reports

The Gascoyne Demersal Scalefish Resource (GDSR) comprises over 80 species inhabiting inshore (20-250 m deep) and offshore ( > 250 m deep) waters in the Gascoyne Coast Bioregion (GCB; south of Onslow to north of Kalbarri). The GDSR is primarily targeted by commercial, charter and recreational boat-based line fishers. Snapper and Goldband Snapper are the indicator species selected for monitoring and assessing the status of the inshore suite of the GDSR, while Ruby Snapper and Greybanded Grouper are the indicators for the offshore suite.

Periodic assessments of GDSR indicator species demonstrated that historical fishing of Snapper led to stocks being below …

Resource Assessment Report No. 04: North Coast Demersal Scalefish Resource - Kimberley 2025 Assessment, Fabian Trinnie, Rubie Evans-Powell, Ainslie Denham, Sybrand A. Hesp, Corey Wakefield, Craig L. Skepper, Brett Crisafulli, Stephen J. Newman

Resource Assessment Reports

The North Coast Demersal Scalefish Resource (NCDSR) comprises ecological suites of tropical demersal fish species that occur predominantly in inshore waters (20–250 m deep) and offshore waters ( > 250 m deep) of the North Coast Bioregion (NCB). More than 60 demersal species are landed by fisheries operating in the Kimberley and Pilbara regions of the NCB each year, including high-value snappers (Lutjanidae), groupers (Epinephelidae), and emperors (Lethrinidae). As outlined in the NCDSR Harvest Strategy (DPIRD, 2017), the Kimberley resource is currently monitored through annual reviews of total removals and catch rate trends of indicator species, as well as periodic (every …

Procedures For Rangeland Condition Assessment In The Pilbara And Southern Rangelands 2025, Department Of Primary Industries And Regional Development, Western Australia

Natural resources published reports

This report defines the procedures used in 2025 by DPIRD to complete rangeland condition assessment (RCA) in the Pilbara and southern rangelands region which has predominantly shrub-based pastures. For the rest of the pastoral estate, DPIRD uses the Procedures for RCA in the Kimberley which has grass pastures.

RCA is the process DPIRD uses to make systematic, station-level assessment of rangeland. Rangeland condition considers both the condition of pastures (defined in the ‘Pasture condition guides for the Pilbara’ and ‘Pasture condition guides for the southern rangelands including the Gascoyne, Murchison and Goldfields-Nullarbor’) and soils as determined by erosion, using the …

Miscanthus × Giganteus Increases Soil Maximum Water Holding Capacity Compared To Maize, Jessica T. Nelson, Maoz Dor, Andy D. Vanloocke, Jacob E. Studt, Perla K. Schrock, Marshall D. Mcdaniel

School of Earth, Environmental, & Marine Sciences Faculty Publications

Soil ecosystem services, like the ability to store water, have been depleted after a century of conventional, annual cropping, and perennial crops offer a solution to this and other agricultural environmental issues. We assessed the impact of Miscanthus × giganteus (miscanthus), a perennial biomass crop, on soil water holding capacity and structure compared to continuous maize (Zea mays L.) at two sites in Iowa. After three growing seasons, we measured the following: (1) maximum water holding capacity (MWHC) with and without soil structure, and (2) total porosity and pore size distribution (PSD) via micro-computed tomography (microCT). Miscanthus increased MWHC …

Fisheries Science Update - West Coast Demersal Scalefish Resource - September 2025, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The Department of Primary Industries and Regional Development (DPIRD) monitors the status of Western Australia’s demersal scalefish resources by undertaking regular stock assessments on indicator species.

This summary provides key outcomes of the 2025 assessment of the West Coast Demersal Scalefish Resource (Resource Assessment Report No. 2).

Fisheries Science Update - Gascoyne Demersal Scalefish Resource - September 2025, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The Department of Primary Industries and Regional Development (DPIRD) monitors the status of Western Australia’s demersal scalefish resources by undertaking periodic stock assessments on key indicator species.

This summary provides key outcomes of the 2024 Gascoyne Demersal Scalefish Resource Stock Assessment (Resource Assessment Report No. 3).