Life Sciences Commons^™

Optimisation Of Grass Measurement Technologies Through Field Experimentation And Numerical Simulation Methods, Darren Joseph Murphy

Theses

Maximising pasture utilisation through optimal grassland management is vital in terms of ensuring the economic sustainability and mitigating the environmental impact of both Irish and global pasture-based livestock production. Frequent and accurate measurement of grass quantity and quality is one of the main methods of maximising grass production and utilisation on pasture-based farms. The most prominent grass measurement tool used on Irish pasture is the rising plate meter (RPM), however, there are a range of issues with this method including operator bias, precision and difficulties in accounting for spatial variation. Currently, there is no definitive protocol for grass measurement which …

Raw And Pure Education In The Society, Iwasan D. Kejawa Ed.D

Department of Educational Administration: Dissertations, Theses, and Student Research

What does education mean to individuals in the world today? Education is a way one can attain or improve his or her ability to lead and survive in the society of ours. Without educational training of the mind, it may be impossible to realize the importance of adaptability of living in the environment. Without education, It may also be difficult to embellish the use of both the mental and physical attributes possessed by individual beings.

What really is education? Education is the training of the mind to perform desire functions or to perpetuate the modality of obtaining an end or …

Escalado De La Producción De Galactooligosacáridos A Reactor Discontinuo De 3 Y 20 Litros Usando B-Galactosidasa Kluyveromyces Lactis Libre, Karolain Cortes Santamaría, María Fernanda Gómez Pineda

Ingeniería de Alimentos

Los galactooligosacáridos (GOS) son compuestos empleados en alimentos funcionales por su actividad prebiótica. Se obtienen por la hidrólisis de la lactosa, empleando enzimas como β- Galactosidasa. El objetivo de este proyecto fue evaluar el efecto de escalado en la producción de GOS usando β- Galactosidasa de Kluyveromyces lactis, para ello, se empleó el lactosuero descremado y desmineralizado de la industria quesera, con el fin de obtener la lactosa que es el componente de interés para ser empleado en la producción de GOS. La lactosa fue concentrada a 33% por medio de evaporador, sin embargo, los resultados de rendimiento no fueron …

A Mechanism Behind The Mechanotransduction Of Surface Characteristics In Osteoblasts, Otto J. Juhl Iv

Theses and Dissertations

Biomaterials for use in bone regeneration and healing range from metal and metal alloy implants to hydrogel-based solutions. These materials can be optimized to increase bone healing and integration by improving the mechanical and biological properties. Regardless of the material itself, the cell-substrate interaction is key to the success of the biomaterial once implanted. Substrate surface characteristics such as roughness, wettability, and particle density are well-known contributors to a substrate’s overall osteogenic potential, and therefore the substrate's overall success. Unfortunately, it is still unknown how these substrate surface characteristics are transduced into intracellular signals by cells, preventing specific tailoring of …

Fmri Feature Extraction Model For Adhd Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, Sampath Jayarathna

Computer Science Faculty Publications

Biomedical intelligence provides a predictive mechanism for the automatic diagnosis of diseases and disorders. With the advancements of computational biology, neuroimaging techniques have been used extensively in clinical data analysis. Attention deficit hyperactivity disorder (ADHD) is a psychiatric disorder, with the symptomology of inattention, impulsivity, and hyperactivity, in which early diagnosis is crucial to prevent unwelcome outcomes. This study addresses ADHD identification using functional magnetic resonance imaging (fMRI) data for the resting state brain by evaluating multiple feature extraction methods. The features of seed-based correlation (SBC), fractional amplitude of low-frequency fluctuation (fALFF), and regional homogeneity (ReHo) are comparatively applied to …

Análisis De Ciclo De Vida Para La Elaboración De Quesos En Una Fabrica De Belén, Boyacá., Juan Andres Vargas Mora, Geinner Evelio Gil Martinez

Ingeniería Ambiental y Sanitaria

La industria productora de quesos y otros productos lácteos, durante los procesos productivos que son realizados a la leche para la fabricación de quesos, se generan diferentes problemáticas ambientales como lo son: emisiones de gases, vertimientos de aguas residuales y disposición de residuos sólidos.

Por lo tanto, el objetivo principal de este proyecto se basó en desarrollar un análisis de Ciclo de vida (ACV), usando como caso de estudio la planta productora de queso llamada Lácteos el Libertador, que se encuentra ubicada en el municipio de Belén, Boyacá. Mediante el software SimaPro y usando como método de evaluación ReCiPe , …

Food From Somewhere: Envisioning And Practicing Aspirational Food Systems, Caitlin Morgan

Graduate College Dissertations and Theses

This transdisciplinary dissertation explores the connections between material conditions, human engagements, and the social, economic, and ecological contexts in which they exist. It investigates imaginations of a better food system, projects people have already undertaken, and what happens when their visions meet reality.

Chapter 1 weaves together diverse literature: a justification for action-oriented research and a blending of ecofeminist scholarship, agroecology and sustainable agriculture, ecological economics, systems theory and food systems scholarship, and sensory studies. These disciplines tie together through notions of embeddedness, embodiment, and the context for action, which all translate to the dissertation’s methodological approach of mixed qualitative …

Optimizing New In Vitro Methodologies For Assessing The Effects Of Mechanical Stimuli On Lung Cells: Implications For Lung Biology And Disease, Alicia E. Tanneberger

Graduate College Dissertations and Theses

Chronic lung diseases affect millions of people in the United States and are a leading cause of both morbidity and mortality. Studying how environmental factors affect lung cell biology and function is being increasingly recognized as a critical step in understanding lung disease pathogenesis and the development of new therapeutic approaches that combat lung diseases. These factors include lung extracellular matrix (ECM) composition and the mechanobiological factors of stiffness and cyclic mechanical strain, which during breathing, act on cells during the normal expansion and contraction of the lung. However, current methodologies for studying these factors have significant limitations and new …

Software And Data Visualization Platform For Groundwater Level And Quality Monitoring System, Carlos M. Oppus, Ma. Aileen Leah G. Guzman, Maria Leonora C. Guico, Jose Claro N. Monje, Mark Glenn F. Retirado, John Chris T. Kwong, Genevieve C. Ngo, Annael J. Domingo

Electronics, Computer, and Communications Engineering Faculty Publications

Rapid urbanization and increasing population come with the increased extraction and use of groundwater resources. To track the effect of these activities on groundwater level and quantity; a system for real-time monitoring is devised. In this paper; we present a software system design that enables a locally-developed groundwater level and water quality monitoring hardware setup to gather water quality parameter data; send it to a cloud server; and present organized data for better visualization. The hardware setup consists of an Arduino microcontroller. Upon deployment; the hardware setup is linked to an Android application that connects to the web-based platform.

Tolle Lege Works Published In 2021, Mcquade Library

Bibliographies

Compiled Tolle Lege bibliography of works published by members of the Merrimack College Community in 2021. Works include journal articles, books, book chapters, conference presentations and posters, and more.

Biomechanically Inspired Assistive Technology To Restore Movement Of The Upper Limbs After Stroke, Ariel Thomas

Graduate Theses, Dissertations, and Problem Reports

A stroke often damages the neural structures responsible for movement. Stroke is a heterogeneous disease, affecting each survivor differently. There are common motor features of a stroke, but even these features vary across time as an individual proceeds through different stages of recovery. The different ways in which stroke motor impairment can present itself are often overlooked, but these differences are fundamental to the understanding of the disease and its recovery. When motor assessments are capable of acquiring information necessary to parse out a detailed profile of each stroke case, this will lead to an improved neuromechanical understanding of the …

Leveraging Chemical And Computational Biology To Probe The Cellulose Synthase Complex, B. Kirtley Amos

Theses and Dissertations--Plant and Soil Sciences

Cellular expansion in plants is a complex process driven by the constraint of internal cellular turgor pressure by an expansible cell wall. The main structural element of the cell wall is cellulose. Cellulose is vital to plant fitness and the protein complex that creates it is an excellent target for small molecule inhibition to create herbicides. In the following thesis many small molecules (SMs) from a diverse library were screened in search of new cellulose biosynthesis inhibitors (CBI). Loss of cellular expansion was the primary phenotype used to search for putative CBIs. As such, this was approached in a forward …

Evaluating The Biotic Condition Of Restored Streams In Kentucky’S Inner Bluegrass Region, Charles Cole Crankshaw

Theses and Dissertations--Biosystems and Agricultural Engineering

Numerous stream restoration projects have been implemented in Kentucky’s Inner Bluegrass region to offset anthropogenic impacts. These projects range from full channel realignments to volunteer-led riparian installations. To assess the ability of said projects to restore stream habitat and biota, full restoration (n=12) and riparian (n=6) sites were compared to reference (n=6) and disturbed (n=12) sites using RBP and SVAP protocols, macroinvertebrate samples, and geomorphology. General trends for SVAP, RBP, and BI scores, starting with highest habitat or biotic quality, were reference sites, full and riparian restoration sites, then disturbed sites. The number of EPT taxa, another indicator of biological …

A Zugunruhe Data Collection System Using Passive Infrared Sensors, Ryan Terry, Luis E. Ramirez, Carol Carrera, Abigail Kimmitt, Kira Delmore, Ana Goulart

Pursue: Undergraduate Research Journal

When engineers and biologists work together, there is a lot to learn on both sides. For instance, our work introduced us to zugunruhe, which is a German word that means “unrest”. It is used in the context of migratory birds, as they become restless at night, inside their cages, during their migratory period. When does zugunruhe start? It usually starts when the weather becomes cold and the days shorter, but it varies for different bird species. Moreover, global warming has caused changes in zungunruhe’s timing, which made it even harder to predict. Another question is about genetics: is …

Mapping Of Auditory Cortical Functions Using Electrocorticography, James Robert Swift

Legacy Theses & Dissertations (2009 - 2024)

Communication is a dynamic process through which we translate our inner thoughts in such a way that they can be shared with another person. This complex neurological phenomenon is a key predictor of our productivity and health. When our ability to communicate is compromised, our quality of life suffers. Although numerous methods to investigate the neuroscientific underpinnings of human language exist, our understanding of this process remains incomplete. Improving our understanding of where, when, and how auditory cortical activity occurs can enhance diagnostic techniques and improve treatment methods for neurological conditions that can impact auditory processing, such as epilepsy, or …

Intrabodies Reveal Critical Steps Involved In Ricin's Interactions With The Ribosome, Timothy Francis Czajka

Legacy Theses & Dissertations (2009 - 2024)

Ricin is a highly lethal protein toxin derived from the seeds of the castor plant, Ricinus communis. It is a Type II ribosome inactivating protein (RIP), meaning it is a heterodimer with one subunit, ricin toxin B (RTB), that mediates cell surface attachment and intracellular trafficking and a second subunit, ricin toxin A (RTA), that irreversibly shuts down protein synthesis in the cytosol. During trafficking, RTA and RTB necessarily separate in the endoplasmic reticulum, wherein RTA unfolds and translocates into the cytosol where it refolds into an enzymatically active conformation. RTA is remarkably fast acting and efficient, with few molecules …

Development Of Chemical Methods For Oligonucleotide Purification, Paramagnetic Labeling And Synthesis Of Dna-Based Advanced Materials, Muhan He

Legacy Theses & Dissertations (2009 - 2024)

This thesis describes a chemical method for alternative oligonucleotide purification that is non-chromatographic and gel-free and allows to routinely synthesize and purify long functional RNA strands. The purification of long RNAs is based on the bio-orthogonal inverse electron demand Diels-Alder (IEDDA) chemistry between trans-cyclooctene (TCO) and tetrazine (Tz). Target oligonucleotide strands are selectively tagged with Tz and can be captured and purified from the failure sequences with immobilized TCO. RNA strands are synthesized on solid support through a photolabile linker to avoid the loss of Tz tag. Purity of the isolated oligonucleotides was evaluated using gel electrophoresis, HPLC and mass …

Modeling Energy Flows In Floating In-Pond Raceways Utilizing Solar Power Back-Up, Bo Smith

Theses and Dissertations--Biosystems and Agricultural Engineering

The In-pond Raceway (IPR) is a novel option for production aquaculture, depending on water moving devices to provide constant flow. Device failure may result in catastrophic fish loss, requiring power backup systems to mitigate risk in case of power outages. Because these systems must be dependable and many suitable locations are remote, off-grid solar photovoltaic (PV) systems with battery storage have been considered since they eliminate need for utility power. Such systems can be hard to size and expensive. This study modeled system requirements using an energy balance to determine whether systems could withstand varying loads based on climatological conditions. …

Evaluación De Dos Disolventes En La Extracción De Aceite A Partir De Borra De Café, Zailly Lucia Acosta Meza, Natalia Milena Celis Barahona

Ingeniería de Alimentos

En Colombia, el cultivo y la recolección del café reportó un rendimiento total de 1'188.000 sacos de café, la producción del grano aumentó 32% para mayo de 2018, y se cultiva café 100% de la especie arábica. Las variedades de Coffea arábica L. contienen una mayor cantidad de lípidos y sacarosa que Coffea canephora (Robusta). En esta investigación se determina la curva de equilibrio sólido-líquido de la extracción de aceite a partir de la borra de café, la cual permitió realizar recomendaciones de diseño para este proceso. Se realizó en cuatro etapas, inicialmente se hizo la recolección de la borra …

Artificial Reefs: A History, A Science, A Technology, Mairead D. Farrell

Honors Theses

Over the past 60 years, artificial reefs have expanded beyond the definition of a technology, and in turn have developed into a unique branch of marine science. To better emphasize this growth and separation, a brief history of artificial reef development and usage in chapter two shows some of the key shifts over time in this technology’s purpose and the materials used to achieve that goal. Likewise, to indicate the scientific development of artificial reefs as a branch of marine science, their usage for discovery and research is recorded in chapter three, along with the exponential increase in published scientific …

Exposure Assessment Of Emerging Contaminants: Rapid Screening And Modeling Of Plant Uptake, Majid Bagheri

Doctoral Dissertations

"With the advent of new chemicals and their increasing uses in every aspect of our life, considerable number of emerging contaminants are introduced to environment yearly. Emerging contaminants in forms of pharmaceuticals, detergents, biosolids, and reclaimed wastewater can cross plant roots and translocate to various parts of the plants. Long-term human exposure to emerging contaminants through food consumption is assumed to be a pathway of interest. Thus, uptake and translocation of emerging contaminants in plants are important for the assessment of health risks associated with human exposure to emerging contaminants. To have a better understanding over fate of emerging contaminants …

Small Unmanned Aircraft Systems Acoustic Analysis For Noninvasive Marine Mammal Response: An Exploratory Field Study, David Thirtyacre, Gennifer Brookshire, Sarah Callan, Brittany Arvizu, Patrick Sherman

International Journal of Aviation, Aeronautics, and Aerospace

As in countless other fields of human endeavor, small unmanned aircraft systems (sUAS) have the potential to benefit pinniped (Pinnipedia; e.g., Phocidae [seals], Otariidae [sea lions], and Odobenidae [walruses]) response efforts. The employment of sUAS could give responders a close-up look at animals in distress in order to determine their condition as well as develop a response strategy. However, unlike other subjects that are regularly inspected by sUAS (e.g., croplands and civil infrastructure) pinnipeds may respond to the distinctive sound generated by small, multirotor sUAS. This reaction may include retreating into the water en masse, which could put …

Lipid Droplet Membrane Proteome Remodeling Parallels Ethanol-Induced Hepatic Steatosis And Its Resolution, Carol A. Casey, Terrence M. Donohue Jr., Jacy L. Kubik, Vikas Kumar, Michael J. Naldrett, Nicholas T. Woods, Cole P. Frisbie, Mark A. Mcniven, Paul G. Thomes

Nebraska Center for Biotechnology: Faculty and Staff Publications

Abstract Lipid droplets (LDs) are composed of neutral lipids enclosed in a phospholipid monolayer, which harbors membrane-associated proteins that regulate LD functions. Despite the crucial role of LDs in lipid metabolism, remodeling of LD protein composition in disease contexts, such as steatosis, remains poorly understood. We hypothesized that chronic ethanol consumption, subsequent abstinence from ethanol, or fasting differentially affects the LD membrane proteome content and that these changes influence how LDs interact with other intracellular organelles. Here, male Wistar rats were pair-fed liquid control or ethanol diets for 6 weeks, and then, randomly chosen animals from both groups were either …

In Vitro And In Vivo Response To A Novel Borophosphate Bioactive Glass, Nada Abokefa

Masters Theses

"Bioactive glasses have been widely used in several biomedical and tissue engineering applications since the late 1960s. Numerous families of bioactive glasses have emerged over the years, with each having its own advantage and disadvantage. One concern common to all families is that most bioactive glasses create a basic or acidic environment when degraded and, therefore, are toxic for cells. Recently, there has been an increased interest in borophosphate bioactive glass (BPBGs) because of their neutral pH, release of therapeutic ions, and biodegradable properties. Despite the growing interest, there is little reported on the bioactivity of BPBGs. The biological effects …

Neural Network Supervised And Reinforcement Learning For Neurological, Diagnostic, And Modeling Problems, Donald Wunsch Iii

Masters Theses

“As the medical world becomes increasingly intertwined with the tech sphere, machine learning on medical datasets and mathematical models becomes an attractive application. This research looks at the predictive capabilities of neural networks and other machine learning algorithms, and assesses the validity of several feature selection strategies to reduce the negative effects of high dataset dimensionality. Our results indicate that several feature selection methods can maintain high validation and test accuracy on classification tasks, with neural networks performing best, for both single class and multi-class classification applications. This research also evaluates a proof-of-concept application of a deep-Q-learning network (DQN) to …

Evaluación De Impacto Ambiental En El Proyecto Red De Huertas Urbanas En Localidad Rafael Uribe Uribe De Bogotá D.C, Andrés Felipe Pinto Arias, René Alejandro Aguilar Díaz

Ingeniería Ambiental y Sanitaria

La siguiente investigación tiene por objeto realizar la evaluación de impacto ambiental EIA de la RED huertas agroecológicas de la localidad de Rafael Uribe Uribe de Bogotá D.C, para esto se inició un marco teórico de las huertas urbanas y agroecológicas en diferentes países de América latina , su incidencia y el debate teórico entre el modelo actual de desarrollo agrícola desarrollado por la revolución verde y el de la propuesta del modelo de desarrollo alternativo agroecológico, en donde se definió que sus principales debates se centran en los impactos negativos que genera por medio de la agricultura industrial e …

Tibial Strains And Tray-Bone Micromotions After Total Knee Arthroplasty: Computational Studies Evaluating The Tibial Fixation, Huizhou Yang

Electronic Theses and Dissertations

Cemented and cementless fixation in total knee arthroplasty (TKA) have been successfully used for decades. As the number of younger and more active patients treated with TKA continues to increase, long-term implant survivorship is of increasing importance. One of the most common complications and hence the reason for revision is mechanical loosening (23.1% of all revised TKA). The loosening mechanisms have been proposed for different fixation types. For cemented fixation, bone remodeling after surgery is regulated by the changes in strain energy density (SED). The recruitment of osteoclasts and osteoblasts is controlled by SED-related signals. Insufficient stimuli can promote bone …

Impact Of Hemodynamic Vortex Spatial And Temporal Characteristics On Analysis Of Intracranial Aneurysms, Kevin W. Sunderland

Dissertations, Master's Theses and Master's Reports

Subarachnoid hemorrhage is a potentially devastating pathological condition in which bleeding occurs into the space surrounding the brain. One of the prominent sources of subarachnoid hemorrhage are intracranial aneurysms (IA): degenerative, irregular expansions of area(s) of the cerebral vasculature. In the event of IA rupture, the resultant subarachnoid hemorrhage ends in patient mortality occurring in ~50% of cases, with survivors enduring significant neurological damage with physical or cognitive impairment. The seriousness of IA rupture drives a degree of clinical interest in understanding these conditions that promote both the development and possible rupture of the vascular malformations. Current metrics for the …

Analysis Of Modern Barn Design, Gunther Soehnlen

Williams Honors College, Honors Research Projects

The agriculture industry is always changing. Barn structures are one of the most important aspects of the agriculture industry. As the agriculture industry changes, so does the design and construction of barns. There are many types of barns, but over the last 300 years four of the most prevalent types have been the Bank Barn, Open Span Truss Barn, Hoop Barn, and Transverse Frame Barn. The Bank Barn and Transverse Frame Barn have been popularly built for over 200 years. The Hoop Barn and the Open Span Truss Barn have been recently introduced to the industry, becoming popular within the …

An Enumeration Of Nested Networks, Nathan Cornelius

Williams Honors College, Honors Research Projects

Nested networks have several applications in phylogenetics and electrical circuit theory. In many cases, there may exist more than one distinct network which correctly models a given data set. This proposes a combinatorial problem to determine all possible network solutions. In this paper, we partially solve this problem by developing exponential generating functions which enumerate all 1-nested and 2-nested unicyclic networks. We also describe our procedure to directly count all 1-nested and 2-nested networks and provide all 1-nested networks with 7, 8, and 9 terminal nodes.