Electrical and Computer Engineering Commons^™

Synthesising Life-Sciences And Control Engineering: An Outline Survey And A Practical Example, Aidan O'Dwyer

Conference papers

There is an increasing interest in life science related areas in the electrical and control engineering community [1]. One manifestation of this interest is the development of interdisciplinary programmes, such as the B.Sc. in Medical Physics and Bioengineering, offered by the Dublin Institute of Technology from September 2005. A significant amount of research work in control engineering has focused on aspects of human physiological system, for example blood glucose regulation [2], cardiovascular modelling and control [3], and limb control [4]. There is an increasing emphasis on interdisciplinary research; in recognition of this, the Institute of Electrical Engineers (IEE) has starting …

Wavelet Analysis In Virtual Colonoscopy, Sharon Greenblum, Jiang Li, Adam Huang, Ronald M. Summers, Armando Manduca (Ed.), Amir A. Amini (Ed.)

Electrical & Computer Engineering Faculty Publications

The computed tomographic colonography (CTC) computer aided detection (CAD) program is a new method in development to detect colon polyps in virtual colonoscopy. While high sensitivity is consistently achieved, additional features are desired to increase specificity. In this paper, a wavelet analysis was applied to CTCCAD outputs in an attempt to filter out false positive detections. 52 CTCCAD detection images were obtained using a screen capture application. 26 of these images were real polyps, confirmed by optical colonoscopy and 26 were false positive detections. A discrete wavelet transform of each image was computed with the MATLAB wavelet toolbox using the …

Biosensing With Microcantilever-Based Sensors, Xiaodong Yan

Doctoral Dissertations

Microcantilevers provide an ideal platform for biosensors. The micron-sized transducer brings several advantages, such as high sensitivity, small sample quantity for analysis, portability, implantable sensor devices, and the ability to be mass produced and integrated into standard microelectronic processing technologies like complementary metal oxide seminconductors (CMOS).

The objective of this research is to investigate and develop modification methods of microcanitlevers for biosensing applications.

Two microcantilever modification methods were investigated. They are self-assembly monolayer method and layer-by-layer method. A fundamental procedure for modification of microcantilevers using the layer-by-layer approach was developed for the first time in this research. These modification methods …

Room-Temperature Atmospheric Pressure Plasma For Biomedical Applications, Mounir Laroussi, Xinpei Lu

Electrical & Computer Engineering Faculty Publications

As low-temperature non-equilibrium plasmas come to play an increasing role in biomedical applications, reliable and user-friendly sources need to be developed. These plasma sources have to meet stringent requirements such as low temperature (at or near room temperature), no risk of arcing, operation at atmospheric pressure, preferably hand-held operation, low concentration of ozone generation, etc. In this letter, we present a device that meets exactly such requirements. This device is capable of generating a cold plasma plume several centimeters in length. It exhibits low power requirements as shown by its current-voltage characteristics. Using helium as a carrier gas, very little …

A Vocalisation-Based Drawing Interface For Disabled Children, Ted Burke

Articles

In our work with disabled children at Ireland’s National Rehabilitation Hospital, a problem we have experienced in the facilitation of art activities is that traditional art materials and standard computer drawing programs sometimes prove inaccessible. In this paper, an original system, called “PaintMyVoice” is presented which facilitates the creation of two or three-dimensional images using a variety of novel input modalities. In particular, vocalisations can be used to create original images of a variety of objects, including trees, flowers and landscape elements. Additional input to the system can optionally be provided via mouse, keyboard, switch interface or digital camera depending …

Stimulation Of Capacitative Calcium Entry In Hl-60 Cells By Nanosecond Pulsed Electric Fields, Jody A. White, Peter F. Blackmore, Karl H. Schoenbach, Stephen J. Beebe

Bioelectrics Publications

Nanosecond pulsed electric fields (nsPEFs) are hypothesized to affect intracellular structures in living cells providing a new means to modulate cell signal transduction mechanisms. The effects of nsPEFs on the release of internal calcium and activation of calcium influx in HL-60 cells were investigated by using real time fluorescent microscopy with Fluo-3 and fluorometry with Fura-2. nsPEFs induced an increase in intracellular calcium levels that was seen in all cells. With pulses of 60 ns duration and electric fields between 4 and 15 kV/cm, intracellular calcium increased 200-700 nM, respectively, above basal levels (similar to100 nM), while the uptake of …

Time Domain Dielectric Spectroscopy Analysis Of Hl-60 Cell Suspensions After Microsecond And Submicrosecond Pulsed Electric Fields, Allen Laurence Garner

Electrical & Computer Engineering Theses & Dissertations

Pulsed electric fields (PEF's) above a certain voltage threshold cause electroporation for microsecond pulses and intracellular effects for submicrosecond pulses. Models describing these effects often depend on the electrical properties of the cell, which are altered by the PEF. Time domain dielectric spectroscopy was used to provide data for these models and to measure changes in the conductivity of HL-60 cell suspensions due to single 50 μs and 10 ns PEF's of the same energy. For 1.1 kV/cm, 50 μs pulses, the conductivity rose within a minute after the pulse and dropped dramatically approximately forty minutes after the pulse. For …

Plasma Interaction With Microbes, M. Laroussi, D. A. Mendis, M. Rosenberg

Electrical & Computer Engineering Faculty Publications

The germicidal effects of a non-equilibrium atmospheric pressure plasma generated by a novel resistive barrier discharge on representatives of the two classes of bacteria (Gram-negative and Gram-positive) are discussed. The plasma exposure, while being lethal to both bacterial classes, also produced gross structural damage in the Gram-negative E. coli while none was observed in the more structurally robust Gram-positive Bacillus subtilis. An electrophysical process involving the role of the electrostatic tension on a charged body in a plasma is invoked to explain both observations. Since the efficacy of this electrophysical process depends not only on the tensile strength of …

Compact Supercell Method Based On Opposite Parity For Bragg Fibers, Wang Zhi, Ren Guobin, Lou Shuquin, Liang Weijun, Shangping Guo

Electrical & Computer Engineering Faculty Publications

The supercell- based orthonormal basis method is proposed to investigate the modal properties of the Bragg fibers. A square lattice is constructed by the whole Bragg fiber which is considered a supercell, and the periodical dielectric structure of the square lattice is decomposed using periodic functions (cosine). The modal electric field is expanded as the sum of the orthonormal set of Hermite-Gaussian basis functions based on the opposite parity of the transverse electric field. The propagation characteristics of Bragg fibers can be obtained after recasting the wave equation into an eigenvalue system. This method is implemented with very high efficiency …

Implementation Of Gy-Eq For Deterministic Effects Limitation In Shield Design, John W. Wilson, Myung-Hee Y. Kim, Giovanni De Angelis, Francis A. Cucinotta, Nobuaki Yoshizawa, Francis F. Badavi

Mathematics & Statistics Faculty Publications

The NCRP has recently defined RBE values and a new quantity (Gy-Eq) for use in estimation of deterministic effects in space shielding and operations. The NCRP's RBE for neutrons is left ambiguous and not fully defined. In the present report we will suggest a complete definition of neutron RBE consistent with the NCRP recommendations and evaluate attenuation properties of deterministic effects (Gy-Eq) in comparison with other dosimetric quantities.

A Study Of Radiofrequency Effects On Gene Expression, Elizabeth A. Coln

Electrical & Computer Engineering Theses & Dissertations

Numerous studies have been completed over the past several years to look at the non-thermal effects of low-level radiofrequency exposure on biological systems. These studies were done to determine if exposure to radiofrequency fields are safe, or if they may lead to health problems or changes to any of the biological processes continually occurring within the human body. Responses measured include stress responses (I), gene expression (2), cell proliferation (3), cell morphology (4), and changes in DNA (5).

Dispersion is the most common model for explaining the electric behavior of biomaterials. It refers to the corresponding frequency domain concept of …

Studies On The Formation Of Dna-Cationic Lipid Composite Films And Dna Hybridization In The Composites, Murali Sastry, Vidya Ramakrishnan, Mrunalini Pattarkine, Krishna N. Ganesh

Faculty Works

The formation of composite films of double-stranded DNA and cationic lipid molecules (octadecylamine, ODA) and the hybridization of complementary single-stranded DNA molecules in such composite films are demonstrated. The immobilization of DNA is accomplished by simple immersion of a thermally evaporated ODA film in the DNA solution at close to physiological pH. The entrapment of the DNA molecules in the cationic lipid film is dominated by attractive electrostatic interaction between the negatively charged phosphate backbone of the DNA molecules and the protonated amine molecules in the thermally evaporated film and has been quantified using quartz crystal microgravimetry (QCM). Fluorescence studies …

Cationic Surfactant Mediated Hybridization And Hydrophobization Of Dna Molecules At The Liquid/Liquid Interface And Their Phase Transfer, Murali Sastry, Ashavani Kumar, Mrunalini Pattarkine, Vidya Ramakrishnan, Krishna N. Ganesh

Faculty Works

Hybridization of complementary oligonucleotides mediated by a cationic surfactant at the water/hexane interface leads to hydrophobic, double-helical DNA which may be readily phase transferred to the organic phase and cast into thin films on solid substrates.

Hybridization Of Dna By Sequential Immobilization Of Oligonucleotides At The Air-Water Interface, Murali Sastry, Vidya Ramakrishnan, Mrunalini Pattarkine, Anand Gole, K. N. Ganesh

Faculty Works

The hybridization of DNA by sequential electrostatic and hydrogen-bonding immobilization of single-stranded complementary oligonucleotides at the air-water interface with cationic Langmuir monolayers is demonstrated. The complexation of the single-stranded DNA molecules with octadecylamine (ODA) Langmuir monolayers was followed in time by monitoring the pressure-area isotherms. A large (and slow) expansion of the ODA monolayer was observed during each stage of complexation in the following sequence: primary single-stranded DNA followed by complementary single-stranded DNA followed by the intercalator, ethidium bromide. Langmuir-Blodgett (LB) films of the ODA-DNA complex were formed on different substrates and characterized using quartz-crystal microgravimetry (QCM), Fourier transform infrared …

Simulation Studies Of Cellular Electroporation Due To Ultra-Fast Electric Pulses, Gayathri R. Barthaki

Electrical & Computer Engineering Theses & Dissertations

Biological systems, from cells to ecosystems, are intrinsically complex information-processing networks. It often becomes difficult to predict their behavior during an experimental investigation, as their behavior is fundamentally chaotic, Hence, building models that mimic the dynamics of such systems and performing computer simulations would help in understanding, predicting, controlling and optimizing these systems. This thesis is aimed at the development of a mathematical model for the process of electroporation in biological cells when they are subjected to ultra-fast electric pulses and at conducting simulations to understand its dynamic behavior with special emphasis on the physics of ultra-short time scales.

With …

Bottom-Up Design Of Artificial Neural Network For Single-Lead Electrocardiogram Beat And Rhythm Classification, Srikanth Thiagarajan

Doctoral Dissertations

Performance improvement in computerized Electrocardiogram (ECG) classification is vital to improve reliability in this life-saving technology. The non-linearly overlapping nature of the ECG classification task prevents the statistical and the syntactic procedures from reaching the maximum performance. A new approach, a neural network-based classification scheme, has been implemented in clinical ECG problems with much success. The focus, however, has been on narrow clinical problem domains and the implementations lacked engineering precision. An optimal utilization of frequency information was missing. This dissertation attempts to improve the accuracy of neural network-based single-lead (lead-II) ECG beat and rhythm classification. A bottom-up approach defined …

Applications Of Wavelet Transforms In Biomedical Optoacoustics, Zibiao Wei, Shujun Yang, Amin N. Dharamsi, Barbara Hargrave

Biological Sciences Faculty Publications

We discuss the utility of wavelet transform methods in signal processing in general, and in particular, demonstrate the technique in optoacoustic applications. In several optoacoustic experiments with different samples, we have successfully enhanced the signal to noise ratios. Wavelet transforms optimize resolution by utilizing a tailored, variable time-window in different frequency regions. The technique's great advantage lies in the fact that the wavelet transform adds some redundancy to the original signal, and some desired features can be enhanced in the transformed space. In addition, proper choice of the basis set allows a sparse representation of the signal. Therefore, even when …

Anion Induced Blue To Purple Transition In Bacteriorhodopsin, Mrunalini Pattarkine, Anil K. Singh

Faculty Works

Purple membrane (PM, λ" role="presentation">λmax" role="presentation">max 570 nm) of H. halobium on treatment with sulphuric acid changes its colour to blue (λ" role="presentation">λmax" role="presentation">max 608 nm). The purple chromophore can be regenerated from the blue chromophore by exogeneous addition of anions such as CI−" role="presentation">− and HPO42−" role="presentation">2−4. Chloride ion is found to be more effective than the dibasic phosphate ion in regenerating the purple chromophore. Nevertheless, one thing common to the anion regeneration is that both CI−" role="presentation">− and HPO42−" role="presentation">2−4 show marked pH effect. At pH 1.0 the efficiency of …

Computer Aided Detection Of Microcalcifications Utilizing Texture Analysis, Ronald C. Dauk

Theses and Dissertations

A comparative study of texture measures for the classification of breast tissue is presented. The texture features investigated include Angular Second Moments, Power Spectrum Analysis and a novel feature, Laws Energy Ratios. The texture study was accomplished as part of the development of a Model Based Vision (MBV) system for the automatic detection of microcalcifications. An overview of the Microcalcification Detection System is presented, which applies image differencing techniques, feature selection methods, and neural networks for locating microcalcification clusters in mammograms. The Power Spectrum Analysis feature set had the best overall performance with an 83% Probability of Detection and an …

Three Dimensional Localization Of Lesions From Digitized Mammograms, Amy L. Magnus

Theses and Dissertations

This thesis describes new algorithms to localize regions-of-interests (ROIs) three dimensionally from a pair of digitized mammograms. This work is intended to add a layer of sophistication to computer aided diagnosis by putting to use the fixed and measurable parameters of mammographic imaging. The fixed parameters are the source to film orientation and the podium-image distance. Measurable parameters are the rotation angle of the x-ray tube from the horizontal and the compression depth (the distance from compression paddle to contact podium distance) at the time of imaging. As an additional benefit, three dimensional localization algorithms alleviate the confusion radiologists may …

Fetal Heart Rate Detection With A Passive Acoustic Sensor System, Zongyao Zhou

Electrical & Computer Engineering Theses & Dissertations

Research and development is presented of real time signal processing methodologies for the detection of fetal heart tones from noise contaminated signals obtained from passive acoustic sensors. A nonlinear Teager energy operator is utilized for detection of the fetal heart tone event. Autocorrelation and a parallel redundancy correction algorithm derives fetal heart rates. A real time monitoring system is described which records and plots the time history of both the fetal heart rate and the acoustic fetal heart signal. The system is validated in the context of the fetal nonstress test. Comparisons are made with ultrasonic nonstress tests on a …

Characterization And Redesign Of The Afit Multielectrode Array, Richard G. Darenberg Jr.

Theses and Dissertations

Since 1978, faculty and graduate students from the Air Force Institute of Technology (AFIT) have been working on an implantable circuit array that can record visual signals from the brain or stimulate the brain. In the current design the circuit is a 16 x 16 array of pads, each pad being 160 x 160 micrometers with 250 micrometers spacing with an 'L' shaped reference pad used as a ground reference. The array is multiplexed so that only one I-O line is required to access all 256 pads. This research was twofold: first to analyze the existing circuit and identify sources …

Experimental Definition For Implantation Of The Afit Cortical Multielectrode Array, Adam G. Spenik

Theses and Dissertations

A two-dimensional multiplexed array of 256 electrodes (16 x 16) has been fabricated using conventional CMOS fabrication techniques. The size and spacing of the electrodes (160 x 160 µm squares with center-to-center spacing of 250 µm) approximate that of the cortical columns. The device is mounted on a small biocompatible package and a protocol to implant this package on the visual cortex of a ferret and a Rhesus monkey was developed and approved. An instrumentation setup to record the data from the device is described as well as the methods used to demultiplex the data. Testing of the device in …

Enhancement Of Audio Localization Cue Synthesis By Adding Environmental And Visual Cues, Eric L. Scarborough

Theses and Dissertations

An audio localization cue synthesizer, the DIRectional Audio Display (DIRAD) was used to simulate auditory distance, room reflections, and to provide spatial audio for computer graphics images. The DIRAD processes input audio signals to generate spatially located sounds for headphone listening. The DIRAD can position audio sources around the head and these sounds are stable with respect to the listener's head position. An interactive, real-time simulation of auditory distance and room reflections was accomplished using the DIRAD in combination with a Silicon Graphics audio processor board installed in a Personal Iris 4D/35. Several demonstrations of auditory distance and the effects …

Instrumentation And Control For A Microprocessor-Based Coronary Perfusion System, Daniel L. Priester

Master's Theses (1922-2009) Access restricted to Marquette Campus

No abstract provided.

Signal Processing Methodologies For An Acoustic Fetal Heart Rate Monitor, Robert A. Pretlow Iii

Electrical & Computer Engineering Theses & Dissertations

Research and development is presented of real time signal processing methodologies for the detection of fetal heart tones within a noise-contaminated signal from a passive acoustic sensor. A linear predictor algorithm is utilized for detection of the heart tone event and additional processing derives heart rate. The linear predictor is adaptively "trained" in a least mean square error sense on generic fetal heart tones recorded from patients. A real time monitor system is described which outputs to a strip chart recorder for plotting the time history of the fetal heart rate. The system is validated in the context of the …

Design And Fabrication Of An Implantable Cortical Semiconductor Integrated Circuit Electrode Array, Pierre K. Lefevre

Theses and Dissertations

This research furthered the processing steps of the AFIT 16 by 16 implantable cortical semiconductor integrated circuit electrode array, or brain chip. The areas of interest include the brain chip electron ics, metallization, ionic permeation, and implantation. The electronics and metallization are heavily covered. A high speed, single clock divide-by-two circuit was modified with a reset transistor and cascaded to form a ripple counter. This device had stable operation at specific source voltage and clock voltage and frequency. A 7-stage inverter with 10 unmodified divide-by-two circuits cascaded operated between 1.7 and 8 volts, and between 39 Khz and 1 Mhz, …