Other Computer Engineering Commons^™

Bifurcation Levels Of The Integral Manifolds Of The Newtonian N-Body Problem, Hannah G. Havel

CURE Proceedings

The N-body problem, first proposed by Isaac Newton, is a field of study in mathematics and physics that involves predicting the motion of particles moving under their mutual gravitational attraction. It has significance to many areas of science, including physics and computer science, and is crucial in understanding how the universe works. In fact, it was a primary motivation for Newton's development of calculus. An important application of the N-body problem is within celestial mechanics and involves how planets and other celestial bodies move with mutual gravitational attraction. It is important in developing how satellites behave in space using complicated …

Machine Learning Models To Automate Radiotherapy Structure Name Standardization, Priyankar Bose

Theses and Dissertations

Structure name standardization is a critical problem in Radiotherapy planning systems to correctly identify the various Organs-at-Risk, Planning Target Volumes and `Other' organs for monitoring present and future medications. Physicians often label anatomical structure sets in Digital Imaging and Communications in Medicine (DICOM) images with nonstandard random names. Hence, the standardization of these names for the Organs at Risk (OARs), Planning Target Volumes (PTVs), and `Other' organs is a vital problem. Prior works considered traditional machine learning approaches on structure sets with moderate success. We compare both traditional methods and deep neural network-based approaches on the multimodal vision-language prostate cancer …

Graph Based System For Evidential Reasoning, Divyarajsinh Chauhan

Master's Projects

In the modern data driven world, graph editing tools have become very essential as they provide means to understand, visualize and manipulate complex relationships between various datasets. They have especially played a crucial role in the space of evidential reasoning, where it has made a significant impact in the decision making process by developers, analysts and researchers to understand and represent the connection in the data. Existing tools fail to handle huge amounts of data efficiently and also don’t have the features required to handle tasks related to evidential reasoning.To address these gaps, we developed Pygrapher Web UI tool. We …

Pygrapherconnect, Shubham Jain

Master's Projects

The evolving landscape of backend computational systems especially in biomedical research involving heavy data operations which have a gap of not being used properly. It is due to the lack of communication standard between the frontend and backend. This gap presents a problem to researchers who need to use the frontend for visualizing and manipulating their data but also want to do complex analysis. CAPRI a python-based backend system specializing in analyzing Evidential Reasoning data also has the same issue. This project offers a solution PyGrapherConnect module acting as a data conversion layer between CAPRI and PyGrapher, its frontend interface. …

Gesture Recognition With Deep Learning, Chaz Chang

Master's Projects

Gesture recognition is a machine learning and computer vision application where gestures are detected from videos. This project uses pose estimation to find the coordinates of important joints as a preprocessing step before trying to classify the gesture. Machine learning layers such as Convolutional Neural Network and Long Short-Term Memory are used. Various types of machine learning models are trained. The accuracy and f1 score of each model are compared. Feature selection is done by testing with different subsets of features. The results show that pose estimation as a preprocessing step provides good accuracy for gesture recognition. The results also …

Prediction Of 2024 Indian Pm Election Results Using Sentiment Analysis On Twitter Data, Surabhi Gupta

Master's Projects

This sentiments analysis study presents a methodical approach to predict the 2024 Indian Prime Minister Election. Data collected spanning from 2020 to 2023 from Twitter using hashtags such as IndianPMElection2024 and on topics such as the revocation of the special status of Jammu and Kashmir, the Farm Bill, and the Digital India initiative, form the core of this research. We utilized a combination of sentiment extraction tools-namely, the NLP Town's Bidirectional Encoder Representations from Transformers (BERT)-based multilingual uncased sentiment model, Valance Aware Dictionary for Sentiment Reasoning (VADER), and TextBlob. Additionally, we used a well-established machine learning model Naive Bayes, deep …

Mild Cognitive Impairment And Alzheimer’S Disease Detection And Testing Interface (Mci-Addti) Modeller10.4 Integrating Structure-Function Prediction Modules, Grant Galileo Jacobson

Master's Projects

In the population of adult human patients who over express Beta and Tau Amyloids, it is unclear why 40% of them do not have Alzheimer’s Disease (AD), when all patients with AD have an overexpression of Beta and Tau Amyloids. The MCI-AD-DTI project’s epigenetic pipeline is an evolving computation tool that seeks epigenetic-related information related to the observed disparity. The MCI-AD-DTI’s epigenetic pipeline’s ability to identify mutations currently relies solely on PyPDB for verification of its protein functionality evaluation. The assessment process of the industry standard application, Modeller10.4, is independent from the current epigenetic pipeline’s protein evaluation algorithm. Thus, this …

Multimap Implementation In Openjdk, Nishant Yadav

Master's Projects

A key-value pair is an elementary data model in which a unique key is associated with a given value. This association between the key and the value allows for a quick lookup of data based on the key and hence is extensively used in programming languages, NoSQL databases, caches, session management, etc. In Java OpenJDK, this elementary data model is implemented by the interface Map, which allows efficient storage and retrieval of data but can only store a single value against each key. In this project, we have implemented a MultiMap data structure in OpenJDK which allows associating multiple values …

Xai-Driven Cnn For Diabetic Retinopathy Detection, Vikas Shenoy Pete

Master's Projects

Diabetes, a chronic metabolic disorder, poses a significant health threat with potentially severe consequences, including diabetic retinopathy, a leading cause of blindness. In this project, we tackle this threat by developing a Convolutional Neural Network (CNN) to support the diagnosis based on eye images. The aim is early detection and intervention to mitigate the effects of diabetes on eye health. To enhance transparency and interpretability, we incorporate explainable AI techniques. This research not only contributes to the early diagnosis of diabetic eye disease but also advances our understanding of how deep learning models arrive at their decisions, fostering trust and …

Serverless Architecture For Machine Learning, Ikshaku Goswami

Master's Projects

Serverless computing is an area under cloud computing which does not require individual management of cloud infrastructure and services. It is the groundwork behind Function as a Service or FaaS cloud computing technique. FaaS provides a stateless event-driven orchestration of functions and services for applications deployed in the cloud, without having to manage the servers and other infrastructure resources. This event driven architecture is being well utilized to manage different web-applications and services. Machine learning can bring a unique challenge to serverless computing, as it involves high-intensive tasks which requires voluminous data. In such a scenario it becomes essential to …

Uncertainty-Aware And Explainable Artificial Intelligence For Identification Of Human Errors In Nuclear Power Plants, Bhavya Reddy Kotla

Master's Projects

Nuclear Power Plants (NPPs) can face challenges in maintaining standard operations due to a range of issues, including human mistakes, mechanical breakdowns, electrical problems, measurement errors, and external influences. Swift and precise detection of these issues is crucial for stabilizing the NPPs. Identifying such operational anomalies is complex due to the numerous potential scenarios. Additionally, operators need to promptly discern the nature of an incident by tracking various indicators, a process that can be mentally taxing and increase the likelihood of human errors. Inaccurate identification of problems leads to inappropriate corrective actions, adversely affecting the safety and efficiency of NPPs. …

A Natural Language Processing Approach To Malware Classification, Ritik Mehta

Master's Projects

Many different machine learning and deep learning techniques have been successfully employed for malware detection and classification. Examples of popular learning techniques in the malware domain include Hidden Markov Models (HMM), Random Forests (RF), Convolutional Neural Networks (CNN), Support Vector Machines (SVM), and Recurrent Neural Networks (RNN) such as Long Short-Term Memory (LSTM) networks. In this research, we consider a hybrid architecture, where HMMs are trained on opcode sequences, and the resulting hidden states of these trained HMMs are used as feature vectors in various classifiers. In this context, extracting the HMM hidden state sequences can be viewed as a …

Image-Based Classification Of Malware Using T-Sne Images, Vincent Stowbunenko

Master's Projects

This Master’s project proposes a novel technique for classifying malware using image-based methods. The approach involves generating t-SNE images from the EMBER dataset, which contains one million samples of both malware and benign files, each represented by over 2,000 features. The t-SNE technique is well-suited for capturing intricate patterns in complex datasets because it effectively maintains the local structure. These t-SNE images are then used as inputs to train two lightweight image classification models, SqueezeNet and MobileNet. Additionally, to provide a benchmark for comparison, a non-image classification model using LightGBM is also explored.

As part of the investigation, the project …

Metagenomic Survey Of Marine 16s Bacterial Communities Off Palmer Station In Antarctica, Daniel Salter

Master's Projects

This project surveys the metagenomic bacterial community composition in marine surface waters off Palmer Station, Western Antarctic Peninsula and correlates findings with temperature and salinity data. Marine bacterial communities play a vital role in nutrient cycling, but data on surface waters in this region are limited. Analyzing fifteen samples of 16S sequencing data from three austral summers, consistent dominance was observed by the classes Alphaproteobacteria, Gammaproteobacteria, and Flavobacteria. Correlation analysis confirmed significant relationships between taxa and environmental conditions. The observed trends suggest varying abilities of phyla to resist and adapt to changing environmental conditions. Notably, Alphaproteobacteria demonstrated adaptability to favorable …

Malware Classification Using Opcode N-Grams And Word Embeddings, Siddhita Joshi

Master's Projects

Malware is a serious risk to any software application whether it is standalone or over the network. In order to protect computer systems, it is essential to detect and classify malware effectively. Modern malware classification research focuses on Machine Learning and Deep Learning techniques to identify advanced malicious software. This project explores malware classification by combining two robust methods: n-grams and word embedding. By extracting opcode n-grams, we make use of sequential nature of malware execution to identify any local patterns within the malware executable.

We use word embedding methods such as Word2Vec, Doc2Vec, and FastText to produce dense vector …

Evaluation Of The Effect Of Walnut Extract On Sp1-Related Pathways, Jihan Yehia

Master's Projects

Walnut extract (WE) has shown promising anti-cancer effects, such as inducing apoptosis and moderating cell cycle progression. A previous study by Dr. Brandon White’s Lab at San Jose State University hypothesizes that WE can downregulate the expression of the pro-tumoral specificity protein 1 (Sp1) in triple negative breast cancer (TNBC). This project builds an RNA-seq pipeline that runs differential gene expression (DGE) analysis to study the effect of WE on TNBC, thereby offering a wider perspective on genes that may be affected by this treatment. The data used in this project originated from Illumina and Nanopore sequencing methods, and DGE …

Efficient Video Qoe Prediction In Intelligent O-Rans, Aditya Kulkarni

Master's Projects

Open Radio Access Network (O-RAN) is a platform developed by a collaboration between wireless operators, infrastructure vendors, and service providers for deploying mobile fronthaul and midhaul networks, built entirely on cloud-native principles. The vision of O-RAN lies in the virtualization of traditional wireless infrastructure components, like Central Units (CU), Radio Units (RU), and Distributed Units (DU). O-RAN decouples the above-mentioned wireless infrastructure components into opensource elements, operating consistently with other elements of different vendors in the network. Quality of Experience (QoE) deals with a user’s subjective measure of satisfaction. RAN Intelligent Controller (RIC) in O-RAN provides flexibility to intelligently program …

Unlearning Hidden Bias Between Refugees : An Initial Empirical Investigation, Akshay Sunil Gurnaney

Master's Projects

The challenges that refugees in various regions encounter are common knowledge. One such challenge is a bias among refugees on ethnocentric grounds. In particular, there are various articles that have pointed out the struggles faced by Syrian refugees in countries like Europe as a result of implicit bias. In fact, the media coverage of Syrian crises and the government responses to the same shed negative light on the refugees themselves. On the contrary, the media coverage of Ukrainian crises is very different with lesser restrictions from the governments.

This research attempts to identify the extent of implicit bias between Ukrainian …

Poriferal Vision: Using Mobilenet To Classify Sponge Spicules Through Transfer Learning, Brian Tran

Master's Projects

Global warming is an ongoing issue where the Earth is rapidly warming up. It negatively affects the growth of coral through ocean warming and ocean acidification. Many coral communities, home to a large variety of marine life, are expected to be severely impacted by these effects. Past evidence suggests that sponges will take over as the primary reef builders since many species of sponges have skeletons made of silica or glass which is not affected by ocean acidification. More research is needed to determine which kinds of sponge will most likely be able to thrive in today’s climate.

This can …

Evalsql - Automated Assessment Of Database Queries, Damanpreet Kaur

Master's Projects

In computer science programs, database is a fundamental subject taught through several undergraduate courses. These courses develop theoretical and practical concepts of databases. Building queries is a key aspect of this learning process, and students are assessed through assignments and quizzes. However, grading these assignments can be time-consuming for professors, and students usually receive feedback only after the deadlines have passed. As a result, students may miss the opportunity to improve their work and achieve better grades. To address this issue, it would be beneficial to provide students with immediate feedback on their submissions. EvalSQL is an automated system that …

Solving The Capacitated Vehicle Routing Problem Using A New Genetic Algorithm, Cajetan Rodrigues

Master's Projects

The Capacitated Vehicle Routing Problem (CVRP) [1, 2, 3] is an extension to the Vehicle Routing Problem (VRP), a well-known NP-hard optimization problem. In our CVRP, we are given a depot, the number of vehicles and their capacity, as well as a set of customers and their demands, both the depot and the set of customers lie in the Euclidean space. The goal is to find for each vehicle an optimal route (tour) starting and finishing at the depot, such that all customers are served exactly once.

In this study, we investigate the effectiveness of using a Genetic Algorithm (GA) …

Advances In Robustness Of Image-Based Malware Detection, Rishika Pamanji

Master's Projects

In recent years, deep learning has emerged as a powerful tool for image classification tasks. However, the performance of individual deep learning models can be limited by their architecture and training data. In this project, various Convolutional Neural Network (CNN) architectures are proposed to train the malware data for feature extraction for various color coordinates such as L, CMYK, RGB, RGBA, and YCbCr. Different optimization techniques like Stochastic Gradient Descent, Root Mean Square Propagation, Ada Delta, Adam, and Adaptive Gradient are used to minimize errors in the trained data, leading to enhanced accuracy. The proposed ensemble deep learning model for …

Visual Scene Classification Using Ensemble Of Machine Learning Classifiers, Rahul Ranganath

Master's Projects

Visual scenes represent the comprehensive visual information observed in a particular environment. Whether natural landscapes, urban settings, or designed interiors, visual scenes encompass the arrangement of elements that individuals perceive through their visual senses. Visual search is perhaps one of the most typical jobs that we carry out several times a day. This is one of the main paradigms for researching visual attention. Many visual task models have been put forward in an effort to better understand visual attention. Fixations and the rapid movement of the eye - saccades, define visual exploration and visual search. When we subject viewers to …

Identification Of Copy Number Variations (Cnvs) Of Epigenetic Factors Related To The Progression Of Pancreatic Ductal Adenocarcinoma (Pdac), Pavithra Raju

Master's Projects

Pancreatic ductal adenocarcinoma (PDAC) is a formidable challenge in oncology due to its aggressive form and late-stage detection. PDAC is known to be influenced by various epigenetic factors like DNA methylation and histone modifications. This study focuses on copy number variations (CNVs) within epigenetic factors which for their role in early diagnosis. Thus, paving the way for identification of potential biomarkers. The epigenetic pipeline was extended based on CNVs and the CNV modified sequences extracted were compared with the wild type sequences of epigenetic PDAC genes. The epigenetic gene KCNJ11 with copy number gain of CNV id 46771406 was used …

Analyzing The Benthic Cover Of Crustose Coralline Algae Using Mask-R Cnn, Rachana Ravindra

Master's Projects

Coral reefs, supporting 25% of marine biodiversity, confront challenges from local and global impacts like overfishing, runoff, acidification, and warming. Crustose Coralline Algae (CCA), pivotal for reef structure and coral settlement, are underrepresented in research. Current methods like Coral Point Count with Excel Extensions (CPCe) have limitations, relying on image quality and being time-consuming. This paper proposes computer vision and Mask R-CNN, a supervised machine learning model, for CCA analysis in reef images, considering color, texture, and shape. Results indicate promise in clustering and classifying organisms. The innovative technology reduces manual labor, enhancing image analysis, simplifying the understanding of CCA’s …

Ensemble Transformer Architecture For Efficient And Real Time Sign Language Translation, Sumeet Ghegade

Master's Projects

Sign language is a form of visual language that uses face expression and hand gestures to communicate thoughts and concepts. The term refers to multiple visual languages that share some common visual cues but differ in their grammar and syntax. Sign language translation (SLT) is a crucial step in closing the communication gap between hearing and hearingimpaired people. The study of SLT using machine learning has gotten a lot of interest during the last three years but despite progress, SLT research is still in its early phases. Most of the previous approaches first convert the signs to glosses and then …

Gesture Recognition Of Sign Language Alphabet Using Machine Learning Techniques, Gursimran Singh

Master's Projects

With the rising incidence of hearing loss, effective sign language recognition has become crucial for enhancing communication for individuals with hearing impairments. Traditional sensor-based recognition systems have been challenged by the complexities of realworld settings, prompting a shift toward more adaptable vision-based recognition systems. Distinct from previous studies, this work pioneers the use of ensemble methods with advanced filtering techniques on the Sign Language MNIST dataset, offering a novel perspective on sign language recognition. This research delves into the intersection of machine learning and image processing to develop a robust framework for sign language recognition. A range of filters, including …

Improving Developers' Understanding Of Regex Denial Of Service Tools Through Anti-Patterns And Fix Strategies, Sk Adnan Hassan, Zainab Aamir, Dongyoon Lee, James C. Davis, Francisco Servant

Department of Electrical and Computer Engineering Faculty Publications

Regular expressions are used for diverse purposes, including input validation and firewalls. Unfortunately, they can also lead to a security vulnerability called ReDoS (Regular Expression Denial of Service), caused by a super-linear worst-case execution time during regex matching. Due to the severity and prevalence of ReDoS, past work proposed automatic tools to detect and fix regexes. Although these tools were evaluated in automatic experiments, their usability has not yet been studied; usability has not been a focus of prior work. Our insight is that the usability of existing tools to detect and fix regexes will improve if we complement them …

An Empirical Study Of Pre-Trained Model Reuse In The Hugging Face Deep Learning Model Registry, Wenxin Jiang, Nicholas Synovic, Matt Hyatt, Taylor R. Schorlemmer, Rohan Sethi, Yung-Hsiang Lu, George K. Thiruvathukal, James C. Davis

Department of Electrical and Computer Engineering Faculty Publications

Deep Neural Networks (DNNs) are being adopted as components in software systems. Creating and specializing DNNs from scratch has grown increasingly difficult as state-of-the-art architectures grow more complex. Following the path of traditional software engineering, machine learning engineers have begun to reuse large-scale pre-trained models (PTMs) and fine-tune these models for downstream tasks. Prior works have studied reuse practices for traditional software packages to guide software engineers towards better package maintenance and dependency management. We lack a similar foundation of knowledge to guide behaviors in pre-trained model ecosystems.

In this work, we present the first empirical investigation of PTM reuse. …

Interest-Based Recommendation System Using Gmail Topic Modelling, Pranav Ghaskadbi

Master's Projects

Emails are a fundamental part of modern communication. Much of communicative discourse in modern society occurs over email, resulting in personal collections for each mail user which are rich in latent user’s interests. Conventional recommendation systems require historical data of user activity and interactions to derive user interests. The absence of activity and interaction data poses an interesting challenge for generating relevant recommendations for users. We were motivated to investigate approaches to identify user interests in the absence of historical data to generate personalized content recommendations. There is opportunity to derive user interests from email data, which can be used …