Computer Engineering Commons^™

Comparative Microarray Data Mining, Shihong Mao

Browse all Theses and Dissertations

As a revolutionary technology, microarrays have great potential to provide genome-wide patterns of gene expression, to make accurate medical diagnosis, and to explore genetic causes underlying diseases. It is commonly believed that suitable analysis of microarray datasets can lead to achieve the above goals. While much has been done in microarray data mining, few previous studies, if any, focused on multiple datasets at the comparative level. This dissertation aims to fill this gap by developing tools and methods for set-based comparative microarray data mining. Specifically, we mine highly differentiative gene groups (HDGGs) from given datasets/classes, evaluate the concordance of datasets …

A Hybrid Approach To Retrieving Web Documents And Semantic Web Data, Trivikram Immaneni

Browse all Theses and Dissertations

The Semantic Web has been evolving into a property-linked web of RDF data, conceptually divorced from (but physically housed in) the World Wide Web of hyperlinked documents. Data Retrieval techniques are typically used to retrieve data from the Semantic Web while Information Retrieval techniques are used to retrieve documents from the Hypertext Web. Conceptually unifying the two webs enables the exploitation of their interconnections resulting in benefits to both data and document retrieval. Towards this end, we present the Unified Web model that integrates the two webs and formalizes the structure and the semantics of their interconnections. We present a …

Design Concepts And Process Analysis For Transmuter Fuel Manufacturing, Georg F. Mauer

Fuels Campaign (TRP)

The safe and effective manufacturing of actinide-bearing fuels for any transmutation strategy requires that the entire manufacturing process be contained within a shielded hot cell environment. To ensure that the fabrication process is feasible, the entire process must be designed for remote operation. The equipment must be reliable enough to perform over several decades, and also easy to maintain or repair remotely. The facility must also be designed to facilitate its own decontamination and decommissioning. In addition to these design factors, the potential viability of any fuel fabrication process will also be impacted by a number of variables, such as …

Gigabit Concept Mining: A Sensitivity Analysis, Masters Thesis, December 2006, Andrew Levine

All Computer Science and Engineering Research

Massive amounts of data are passed over public networks. There is a need for network administrators to analyze this traffic, but it was not previously possible to analyze live network data at high speed. It has been shown that streaming computation and deep packet analysis are possible at very high rates through the use of hardware acceleration. This work provides analysis for a larger project that involves digesting large amounts of network traffic. In this system, we process the traffic using hardware that has constraints. The workings of the system are first discussed. Tradeoffs in the design of hardware and …

Leveraging Est Evidence To Automatically Predict Alternatively Spliced Genes, Master's Thesis, December 2006, Robert Zimmermann

All Computer Science and Engineering Research

Current methods for high-throughput automatic annotation of newly sequenced genomes are largely limited to tools which predict only one transcript per gene locus. Evidence suggests that 20-50% of genes in higher eukariotic organisms are alternatively spliced. This leaves the remainder of the transcripts to be annotated by hand, an expensive time-consuming process. Genomes are being sequenced at a much higher rate than they can be annotated. We present three methods for using the alignments of inexpensive Expressed Sequence Tags in combination with HMM-based gene prediction with N-SCAN EST to recreate the vast majority of hand annotations in the D.melanogaster genome. …

The Effect Of Object Color On Depth Ordering, Reynold Bailey, Cindy Grimm, Christopher Davoli, Richard Abrams

All Computer Science and Engineering Research

The relationship between color and perceived depth for realistic, colored objects with varying shading was explored. Background: Studies have shown that warm-colored stimuli tend to appear nearer in depth than cool-colored stimuli. The majority of these studies asked human observers to view physically equidistant, colored stimuli and compare them for relative depth. However, in most cases, the stimuli presented were rather simple: straight colored lines, uniform color patches, point light sources, or symmetrical objects with uniform shading. Additionally, the colors were typically highly saturated. Although such stimuli are useful for isolating and studying depth cues in certain contexts, they leave …

Control Of A Robotic Arm Using Low-Dimensional Emg And Ecog Biofeedback, Timothy M. Blackely, William D. Smart

All Computer Science and Engineering Research

In this dissertation we describe a system that uses a low dimensional input derived from electromyography and electrocorticography data to control a robot. The work involves creating a system that allows signals recorded directly from a human body to allow control of a small robot arm. We compare direct joystick control with electromyogram (EMG) input to determine if one input system is superior, or if the quality of control between them is comparable. We also verify the system that is used to record the electromyogram signals is adaptable to other forms of biosignal input; in particular, direct connection to a …

Splice: A Standardized Peripheral Logic And Interface Creation Engine, Master's Thesis, May 2007, Justin Thiel

All Computer Science and Engineering Research

Recent advancements in FPGA technology have allowed manufacturers to place general-purpose processors alongside user-configurable logic gates on a single chip. At first glance, these integrated devices would seem to be the ideal deployment platform for hardware-software co-designed systems, but some issues, such as incompatibility across vendors and confusion over which bus interfaces to support, have impeded adoption of these platforms. This thesis describes the design and operation of Splice, a software-based code generation tool intended to address these types of issues by providing a bus-independent structure that allows end-users to easily integrate their customized peripheral logic into embedded systems. To …

Experimental Evaluation Of A Coarse-Grained Switch Scheduler, Charlie Wiseman, Jon Turner, Ken Wong, Brandon Heller

All Computer Science and Engineering Research

Modern high performance routers rely on sophisticated interconnection networks to meet ever increasing demands on capacity. Regulating the flow of packets through these interconnects is critical to providing good performance, particularly in the presence of extreme traffic patterns that result in sustained overload at output ports. Previous studies have used a combination of analysis and idealized simulations to show that coarse-grained scheduling of traffic flows can be effective in preventing congestion, while ensuring high utilization. In this paper, we study the performance of a coarse-grained scheduler in a real router with a scalable architecture similar to those found in high …

Analysis Of Finline Structures With Consideration Of Metallization Thickness And Substrate Mounting Grooves, Abderrahmane Ouadi, Hadj Bourdoucen

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, mathematical analysis and numerical calculations of main parameters of finline structures with finite metallization thickness and substrate mounting grooves are developed based on the Method of Lines (MoL). The results obtained provide confirmation of the validity of the technique used and prove its simplicity and adequacy for treating different types of planar structures mainly finline based structures. Unilateral and bilateral finlines including practical parameters, such as metallization thickness and grooves' depths, have been investigated. The effect of these two parameters have been discussed based on realistic configurations and the results show that, at higher frequencies, the grooves …

A Vrp-Based Route Planning For A Mobile Robot Group, Osman Parlaktuna, Aydin Si̇pahi̇oğlu, Ahmet Yazici

Turkish Journal of Electrical Engineering and Computer Sciences

In this study, a vehicle routing problem-based approach is presented to construct non-intersecting routes for the members of a mobile robot team. It is assumed that each robot starts from a central location such as the charging point, completes its route and returns to the starting location. The proposed method consists of three algorithms: a sweep algorithm determines the position of each node in clockwise (or counter clockwise) manner with respect to the starting location; savings algorithm calculates the saving obtained by adding a node to the route of a robot; Dijkstra's shortest path algorithm is used to calculate the …

A Communication Module And Tdma Scheduling For A Swarm Of Small Submarines, Ram Somaraju, Felix Schill

Turkish Journal of Electrical Engineering and Computer Sciences

Swarming algorithms usually require fast and reliable local information distribution among neighbouring nodes. Additionally, many applications also require global information distribution in the shortest possible time. We show that communication links with a range which is small compared to the size of the swarm offer many advantages. We propose a system using low frequency radio communication as a viable alternative to acoustic communication. A time division multiple access algorithm is presented together with results from simulations. The presented system can be effectively used in large scale swarms of small submersibles.

A Novel Method For Load Flow Analysis Of Unbalanced Three-Phase Radial Distribution Networks, Masoud Aliakbar Golkar

Turkish Journal of Electrical Engineering and Computer Sciences

This paper presents a novel method for load flow analysis in radially operated 3-phase distribution networks without solving the well-known conventional load flow equations. The method can be applied for distribution systems in which the loads are unbalanced. As the size of matrix used is very small compared to those in conventional methods, the amount of memory used is very small, the speed is very high, and the relative speed of calculation increases with the size of the system. The method was applied to some practical networks and the results show the superiority of this method over the conventional ones. …

Clarifications Of Rule 2 In Teaching Geometric Dimensioning And Tolerancing, Cheng Lin, Alok Verma

Engineering Technology Faculty Publications

Geometric dimensioning and tolerancing is a symbolic language used on engineering drawings and computer generated three-dimensional solid models for explicitly describing nominal geometry and its allowable variation. Application cases using the concept of Rule 2 in the Geometric Dimensioning and Tolerancing (GD&T) are presented. The rule affects all fourteen geometric characteristics. Depending on the nature and location where each feature control frame is specified, interpretation on the applicability of Rule 2 is quite inconsistent. This paper focuses on identifying the characteristics of a feature control frame to remove this inconsistency. A table is created to clarify the confusions for students …

Introduction: Special Issue For The Selected Papers In The Fourth International Conference On Intelligent Multimedia Computing And Networking (Immcn) 2005, Chong-Wah Ngo, Hong-Va Leong

Research Collection School Of Computing and Information Systems

This special issue introduces seven papers selected from the IMMCN’ 2005, covering a wide range of emerging topics in multimedia field. These papers receive high scores and good comments from the reviewers in their respective areas of intelligent and nextgeneration networking, technology and application, multimedia coding, content analysis and retrieval. The seven papers are extended to 20 pages and then gone through another review process before the final publication. In this issue, we have two papers for video streaming, two papers for multimedia applications, one paper for video coding, and two papers for image and video retrieval.

Pi-Calculus In Logical Form, Marcello M. Bonsangue, Alexander Kurz

Engineering Faculty Articles and Research

Abramsky’s logical formulation of domain theory is extended to encompass the domain theoretic model for picalculus processes of Stark and of Fiore, Moggi and Sangiorgi. This is done by defining a logical counterpart of categorical constructions including dynamic name allocation and name exponentiation, and showing that they are dual to standard constructs in functor categories. We show that initial algebras of functors defined in terms of these constructs give rise to a logic that is sound, complete, and characterises bisimilarity. The approach is modular, and we apply it to derive a logical formulation of pi-calculus. The resulting logic is a …

Identifying Non-Volatile Data Storage Areas: Unique Notebook Identification Information As Digital Evidence, Nikica Budimir, Jill Slay

Journal of Digital Forensics, Security and Law

The research reported in this paper introduces new techniques to aid in the identification of recovered notebook computers so they may be returned to the rightful owner. We identify non-volatile data storage areas as a means of facilitating the safe storing of computer identification information. A forensic proof of concept tool has been designed to test the feasibility of several storage locations identified within this work to hold the data needed to uniquely identify a computer. The tool was used to perform the creation and extraction of created information in order to allow the analysis of the non-volatile storage locations …

Table Of Contents

Journal of Digital Forensics, Security and Law

No abstract provided.

Making Molehills Out Of Mountains: Bringing Security Research To The Classroom, Richard G. Taylor

Journal of Digital Forensics, Security and Law

Security research published in academic journals rarely finds its way to the business community or into the classroom. Even though the research is of high quality, it is written in a manner that is difficult to read and to understand. This paper argues that one way to get this academic research into the business community is to incorporate it into security classrooms. To do so, however, academic articles need to be adapted into a classroom-friendly format. This paper suggests ways to do this and provides an example of an academic article that was adapted for use in a security management …

The Common Body Of Knowledge: A Framework To Promote Relevant Information Security Research, Kenneth J. Knapp, F. N. Ford, Thomas E. Marshall, R. K. Rainer

Journal of Digital Forensics, Security and Law

This study proposes using an established common body of knowledge (CBK) as one means of organizing information security literature. Consistent with calls for more relevant information systems (IS) research, this industrydeveloped framework can motivate future research towards topics that are important to the security practitioner. In this review, forty-eight articles from ten IS journals from 1995 to 2004 are selected and cross-referenced to the ten domains of the information security CBK. Further, we distinguish articles as empirical research, frameworks, or tutorials. Generally, this study identified a need for additional empirical research in every CBK domain including topics related to legal …

Book Review: Computer Forensics: Principles And Practices, Gary C. Kessler

Journal of Digital Forensics, Security and Law

This issue presents the third Book Review column for the JDFSL. It is an experiment to broaden the services that the journal provides to readers, so we are anxious to get your reaction. Is the column useful and interesting? Should we include more than one review per issue? Should we also review products? Do you have suggested books/products for review and/or do you want to write a review? All of this type of feedback -- and more -- is appreciated. Please feel free to send comments to Gary Kessler ([email protected]) or Glenn Dardick ([email protected]).

Table Of Contents

Journal of Digital Forensics, Security and Law

No abstract provided.

Table Of Contents

Journal of Digital Forensics, Security and Law

No abstract provided.

Investigating Information Structure Of Phishing Emails Based On Persuasive Communication Perspective, Ki J. Lee, Il-Yeol Song

Journal of Digital Forensics, Security and Law

Current approaches of phishing filters depend on classifying messages based on textually discernable features such as IP-based URLs or domain names as those features that can be easily extracted from a given phishing message. However, in the same sense, those easily perceptible features can be easily manipulated by sophisticated phishers. Therefore, it is important that universal patterns of phishing messages should be identified for feature extraction to serve as a basis for text classification. In this paper, we demonstrate that user perception regarding phishing message can be identified in central and peripheral routes of information processing. We also present a …

The Design And Implementation Of An Automated Security Compliance Toolkit: A Pedagogical Exercise, Guillermo Francia, Brian Estes, Rahjima Francia, Vu Nguyen, Alex Scroggins

Journal of Digital Forensics, Security and Law

The demand, through government regulations, for the preservation of the security, integrity, and privacy of corporate and customer information is increasing at an unprecedented pace. Government and private entities struggle to comply with these regulations through various means—both automated and manual controls. This paper presents an automated security compliance toolkit that is designed and developed using mostly open source tools to demonstrate that 1) meeting regulatory compliance does not need to be a very expensive proposition and 2) an undertaking of this magnitude could be served as a pedagogical exercise for students in the areas of collaboration, project management, software …

An Exploratory Analysis Of Computer Mediated Communications On Cyberstalking Severity, Stephen D. Barnes, David P. Biros

Journal of Digital Forensics, Security and Law

The interaction between disjunctive interpersonal relationships, those where the parties to the relationship disagree on the goals of the relationship, and the use of computer mediated communications channels is a relatively unexplored domain. Bargh (2002) suggests that CMC channels can amplify the development of interpersonal relationships, and notes that the effect is not constant across communications activities. This proposal suggests a line of research that explores the interaction between computer mediated communications (CMC) and stalking, which is a common form of disjunctive relationships. Field data from cyberstalking cases will be used to look at the effects of CMC channels on …

Predicting Class Life Cycle Maintenance Effort Based On Class Complexity, Lindsey B. Hays

UNF Graduate Theses and Dissertations

In the software industry today many programmers spend countless hours maintaining existing Java programs. The cost of code maintenance affects a company in many ways such as the budget, time management and resources. Making management decisions regarding these issues could be assisted, if maintenance cost of Java classes could be predicted.

The goal of this thesis was to create a new model predicting the maintenance effort based on the Java class complexity. It seems clear the complexity of a Java class can directly relate to the amount of time it will take to perform maintenance on the class.

To develop …

Optimal Layout Of Multicast Groups Using Network Embedded Multicast Security In Ad Hoc Sensor Networks, Richard R. Brooks, Brijesh Pillai, Michele C. Weigle, Matthew Pirretti

Computer Science Faculty Publications

This paper considers the security of sensor network applications. Our approach creates multicast regions that use symmetric key cryptography for communications. Each multicast region contains a single keyserver that is used to perform key management and maintain the integrity of a multicast region. Communications between two multicast regions is performed by nodes that belong to both regions. To ease the network management burden, it is desirable for the networks to self-organize into regions and dynamically select their keyservers. This paper shows how to determine the number of keyservers (k) to use and the size in the number of hops (h) …

A Cognitive Robotics Approach To Comprehending Human Language And Behaviors, Deryle W. Lonsdale, D. Paul Benjamin, Damian Lyons

Faculty Publications

The ADAPT project is a collaboration of researchers in linguistics, robotics and artificial intelligence at three universities. We are building a complete robotic cognitive architecture for a mobile robot designed to interact with humans in a range of environments, and which uses natural language and models human behavior. This paper concentrates on the HRI aspects of ADAPT, and especially on how ADAPT models and interacts with humans.

A Critical Review On Electromagnetic Precursors And Earthquake Prediction, Levent Sevgi̇

Turkish Journal of Electrical Engineering and Computer Sciences

Seismo-electromagnetic precursory-based earthquake prediction studies are criticized in terms of their scientific content, problem complexity, signal excitation and propagation, causal relations with earthquakes, and public awareness and expectations. One aim is to trigger a new debate on this hot topic in the Electromagnetic Society.