Computer Engineering Commons^™

Investigate Genomic 3d Structure Using Deep Neural Network, Yan Zhang

Theses and Dissertations

The 3D structures of the chromosomes play fundamental roles in essential cellular functions, e.g., gene regulation, gene expression, evolution and Hi-C technique provides the interaction density between loci on chromosomes. In this dissertation, we developed multiple algorithms, focusing the deep learning approach, to study the Hi-C datasets and the genomic 3D structures.

Building 3D structure of the genome one of the most critical purpose of the Hi-C technique. Recently, several approaches have been developed to reconstruct the 3D model of the chromosomes from HiC data. However, all of the methods are based on a particular mathematical model and lack of …

Underwater Cave Mapping And Reconstruction Using Stereo Vision, Nicholas Weidner

Theses and Dissertations

This work presents a systematic approach for 3-D mapping and reconstruction of underwater caves. Exploration of underwater caves is very important for furthering our understanding of hydrogeology, managing efficiently water resources, and advancing our knowledge in marine archaeology. Underwater cave exploration by human divers however, is a tedious, labor intensive, extremely dangerous operation, and requires highly skilled people. As such, it is an excellent fit for robotic technology. The proposed solution employs a stereo camera and a video-light. The approach utilizes the intersection of the cone of video-light with the cave boundaries resulting in the construction of a wire frame …

Improving Peptide Identification By Considering Ordered Amino Acid Usage, Ahmed Al-Qurri

Theses and Dissertations

Proteomics has made major progress in recent years after the sequencing of the genomes of a substantial number of organisms. A typical method for identifying peptides uses a database of peptides identified using tandem mass spectrometry (MS/MS). The profile of accurate mass and elution time (AMT) for peptides that need to be identified will be compared with this database. Restricting the search to those peptides detectable by MS will reduce processing time and more importantly increase accuracy. In addition, there are significant impacts for clinical studies. Proteotypic peptides are those peptides in a protein sequence that are most likely to …

Collaboration In Virtual Worlds: Impact Of Task Complexity On Team Trust And Satisfaction, Fiona Fui-Hoon Nah, Shu Schiller, Brian E. Mennecke, Keng Siau

Research Collection School Of Computing and Information Systems

Virtual worlds are three-dimensional, computer-generated worlds in which team collaboration can be facilitated through the use of shared virtual space and mediated using avatars. This article examines the effect of task complexity on team collaboration. A puzzle game in Second Life was used as the collaborative task and task complexity was manipulated by varying the number of pieces in the puzzle. The hypotheses are that task complexity influences team trust, and team trust influences team process satisfaction in virtual team collaboration. The experimental results indicate that task complexity has significant effects on team trust and team process satisfaction, and team …

A Sound Idea: An Investigation Into Accessible Video Game Design For The Deaf And Hard Of Hearing, Luke James Brook

Theses: Doctorates and Masters

A widely accepted, and incorrect, assumption towards hearing accessibility in video games is that deaf and hard of hearing (DHH) users are those who encounter the least barriers and are generally well catered for. Rapid advancement in video game technology has seen video game sound evolve from simple blips generated by internal circuitry to fully realised digital audio used to convey critical information. To accommodate the DHH, this information needs to be conveyed in an alternative manner. However, evidence suggests existing accessible design solutions for the DHH lack specificity and are insufficient. Thus, the inability to hear, or hear well, …

The Impact Of Md5 File Hash Collisions On Digital Forensic Imaging, Gary C. Kessler

Journal of Digital Forensics, Security and Law

The Message Digest 5 (MD5) hash is commonly used as for integrity verification in the forensic imaging process. The ability to force MD5 hash collisions has been a reality for more than a decade, although there is a general consensus that hash collisions are of minimal impact to the practice of computer forensics. This paper describes an experiment to determine the results of imaging two disks that are identical except for one file, the two versions of which have different content but otherwise occupy the same byte positions on the disk, are the same size, and have the same hash …

A New Distributed Chinese Wall Security Policy Model, Saad Fehis, Omar Nouali, Mohand-Tahar Kechadi

Journal of Digital Forensics, Security and Law

The application of the Chinese wall security policy model (CWSPM) to control the information flows between two or more competing and/or conflicting companies in cloud computing (Multi-tenancy) or in the social network, is a very interesting solution. The main goal of the Chinese Wall Security Policy is to build a wall between the datasets of competing companies, and among the system subjects. This is done by the applying to the subjects mandatory rules, in order to control the information flow caused between them. This problem is one of the hottest topics in the area of cloud computing (as a distributed …

Leveraging The Windows Amcache.Hve File In Forensic Investigations, Bhupendra Singh, Upasna Singh

Journal of Digital Forensics, Security and Law

The Amcache.hve is a registry hive file that is created by Microsoft® Windows® to store the information related to execution of programs. This paper highlights the evidential potential of Amcache.hve file and its application in the area of user activity analysis. The study uncovers numerous artifacts retained in Amcache.hve file when a user performs certain actions such as running host-based applications, installation of new applications, or running portable applications from external devices. The results of experiments demonstrate that Amcache.hve file stores intriguing artifacts related to applications such as timestamps of creation and last modification of any application; name, description, publisher …

Bloom Filters Optimized Wu-Manber For Intrusion Detection, Monther Aldwairi, Koloud Al-Khamaiseh, Fatima Alharbi, Babar Shah

Journal of Digital Forensics, Security and Law

With increasing number and severity of attacks, monitoring ingress and egress network traffic is becoming essential everyday task. Intrusion detection systems are the main tools for capturing and searching network traffic for potential harm. Signature-based intrusion detection systems are the most widely used, and they simply use a pattern matching algorithms to locate attack signatures in intercepted network traffic. Pattern matching algorithms are very expensive in terms of running time and memory usage, leaving intrusion detection systems unable to detect attacks in real-time. We propose a Bloom filters optimized Wu-Manber pattern matching algorithm to speed up intrusion detection. The Bloom …

The Impact Of Sha-1 File Hash Collisions On Digital Forensic Imaging: A Follow-Up Experiment, Gary C. Kessler

Journal of Digital Forensics, Security and Law

A previous paper described an experiment showing that Message Digest 5 (MD5) hash collisions of files have no impact on integrity verification in the forensic imaging process. This paper describes a similar experiment applied when two files have a Secure Hash Algorithm (SHA-1) collision.

The 2016 Analysis Of Information Remaining On Computer Hard Disks Offered For Sale On The Second Hand Market In The Uae, Thomas Martin, Andy Jones, Mohammed Alzaabi

Journal of Digital Forensics, Security and Law

This research describes our survey of data remaining on computer hard disks sold on the second hand market in the United Arab Emirates (UAE). This is a repetition of the first survey conducted in 2012 (Jones, Martin, & Alzaabi, 2012). Similar studies have been carried over the last ten years in the United Kingdom, Australia, USA, Germany and France: (Jones, Mee, Meyler, & Gooch, 2005), (Jones, Valli, Sutherland, & Thomas, 2006), (Jones, Valli, Dardick, & Sutherland, 2008), (Jones, Valli, Dardick, & Sutherland, 2009). This research was undertaken to gain insight into the volumes of data found on second-hand disks purchased …

A Survey Of Social Network Forensics, Umit Karabiyik, Muhammed Abdullah Canbaz, Ahmet Aksoy, Tayfun Tuna, Esra Akbas, Bilal Gonen, Ramazan S. Aygun

Journal of Digital Forensics, Security and Law

Social networks in any form, specifically online social networks (OSNs), are becoming a part of our everyday life in this new millennium especially with the advanced and simple communication technologies through easily accessible devices such as smartphones and tablets. The data generated through the use of these technologies need to be analyzed for forensic purposes when criminal and terrorist activities are involved. In order to deal with the forensic implications of social networks, current research on both digital forensics and social networks need to be incorporated and understood. This will help digital forensics investigators to predict, detect and even prevent …

Table Of Contents

Journal of Digital Forensics, Security and Law

No abstract provided.

Computer Network Design For Universities In Developing Countries, Rafid Salih Sarhan Alsarhan

Information Technology Capstone Research Project Reports

The purpose of this project is to design a suitable network system for universities in developing countries. The aim was to design a network with high-quality security and low cost, in such a way that network devices of universities in developing countries, will meet standards associated with the universities in developed countries. This project will help to enhance education in developing countries. There are many devices that were used in designing the network, such as routers, switches, backup, firewall, and servers. All devices were connected to each other to make integration network system and configured by putting IP addresses to …

Distributed All-Ip Mobility Management Architecture Supported By The Ndn Overlay, Zhiwei Yan, Guanggang Geng, Sherali Zeadally, Yong-Jin Park

Information Science Faculty Publications

Two of the most promising candidate solutions for realizing the next-generation all-IP mobile networks are Mobile IPv6 (MIPv6), which is the host-based and global mobility supporting protocol, and Proxy MIPv6 (PMIPv6), which is the network-based and localized mobility supporting protocol. However, the unprecedented growth of mobile Internet traffic has resulted in the development of distributed mobility management (DMM) architecture by the Internet engineering task force DMM working group. The extension of the basic MIPv6 and PMIPv6 to support their distributed and scalable deployment in the future is one of the major goals of the DMM working group. We propose an …

Investigating The Impact Of Unsupervised Feature-Extraction From Multi-Wavelength Image Data For Photometric Classification Of Stars, Galaxies And Qsos, Annika Lindh

Conference papers

Accurate classification of astronomical objects currently relies on spectroscopic data. Acquiring this data is time-consuming and expensive compared to photometric data. Hence, improving the accuracy of photometric classification could lead to far better coverage and faster classification pipelines. This paper investigates the benefit of using unsupervised feature-extraction from multi-wavelength image data for photometric classification of stars, galaxies and QSOs. An unsupervised Deep Belief Network is used, giving the model a higher level of interpretability thanks to its generative nature and layer-wise training. A Random Forest classifier is used to measure the contribution of the novel features compared to a set …

A Reduced Labeled Samples (Rls) Framework For Classification Of Imbalanced Concept-Drifting Streaming Data., Elaheh Arabmakki

Electronic Theses and Dissertations

Stream processing frameworks are designed to process the streaming data that arrives in time. An example of such data is stream of emails that a user receives every day. Most of the real world data streams are also imbalanced as is in the stream of emails, which contains few spam emails compared to a lot of legitimate emails. The classification of the imbalanced data stream is challenging due to the several reasons: First of all, data streams are huge and they can not be stored in the memory for one time processing. Second, if the data is imbalanced, the accuracy …

Android Drone: Remote Quadcopter Control With A Phone, Aubrey John Russell

Computer Engineering

The purpose of the “Android Drone” project was to create a quadcopter that can be controlled by user input sent over the phone’s Wi-Fi connection or 4G internet connection. Furthermore, the purpose was also to be able to receive live video feedback over the internet connection, thus making the drone an inexpensive option compared to other, equivalent drones that might cost thousands of dollars. Not only that, but the Android phone also has a host of other useful features that could be utilized by the drone: this includes GPS, pathing, picture taking, data storage, networking and TCP/IP, a Java software …

Semeo: A Semantic Equivalence Analysis Framework For Obfuscated Android Applications, Zhen Hu

School of Computing: Dissertations, Theses, and Student Research

Software repackaging is a common approach for creating malware. In this approach, malware authors inject malicious payloads into legitimate applications; then, to ren- der security analysis more difficult, they obfuscate most or all of the code. This forces analysts to spend a large amount of effort filtering out benign obfuscated methods in order to locate potentially malicious methods for further analysis. If an effective mechanism for filtering out benign obfuscated methods were available, the number of methods that must be analyzed could be reduced, allowing analysts to be more productive. In this thesis, we introduce SEMEO, a highly effective and …

Tangible Interaction As An Aid For Object Navigation In 3d Modeling, Sanmathi Dangeti

Open Access Theses

This study introduced an interaction technique that used tangible interaction for 3D modeling. A hybrid interaction technique using a Kinect camera and a smartphone with a gyroscope was developed for the navigating objects in a 3D modeling software. It was then tested on 20 participants categorized as amateurs who had basic 3D/ CAD modeling experience and 20 participants categorized as the experts who had extensive experience working with the modeling software. This research study presents the need for existence of such interaction technique, gaps from the related previous studies, statistical findings from the current study and possible reasons for the …

Video Annotation By Crowd Workers With Privacy-Preserving Local Disclosure, Apeksha Dipak Kumavat

Open Access Theses

Advancements in computer vision are still not reliable enough for detecting video content including humans and their actions. Microtask crowdsourcing on task markets such as Amazon Mechnical Turk and Upwork can bring humans into the loop. However, engaging crowd workers to annotate non-public video footage risks revealing the identities of people in the video who may have a right to anonymity.

This thesis demonstrates how we can engage untrusted crowd workers to detect behaviors and objects, while robustly concealing the identities of all faces. We developed a web-based system that presents obfuscated videos to crowd workers, and provides them with …

What Broke Where For Distributed And Parallel Applications — A Whodunit Story, Subrata Mitra

Open Access Dissertations

Detection, diagnosis and mitigation of performance problems in today's large-scale distributed and parallel systems is a difficult task. These large distributed and parallel systems are composed of various complex software and hardware components. When the system experiences some performance or correctness problem, developers struggle to understand the root cause of the problem and fix in a timely manner. In my thesis, I address these three components of the performance problems in computer systems. First, we focus on diagnosing performance problems in large-scale parallel applications running on supercomputers. We developed techniques to localize the performance problem for root-cause analysis. Parallel applications, …

Multipath And Rate Stability, Junjie Liu, Roch A. Guérin

All Computer Science and Engineering Research

Originally Published In Proc. IEEE Globecom Conference - CQRM: Communication QoS, Reliability & Modeling Symposium

Unsupervised Feature Selection For Outlier Detection By Modelling Hierarchical Value-Feature Couplings, Guansong Pang, Longbing Cao, Ling Chen, Huan Liu

Research Collection School Of Computing and Information Systems

Proper feature selection for unsupervised outlier detection can improve detection performance but is very challenging due to complex feature interactions, the mixture of relevant features with noisy/redundant features in imbalanced data, and the unavailability of class labels. Little work has been done on this challenge. This paper proposes a novel Coupled Unsupervised Feature Selection framework (CUFS for short) to filter out noisy or redundant features for subsequent outlier detection in categorical data. CUFS quantifies the outlierness (or relevance) of features by learning and integrating both the feature value couplings and feature couplings. Such value-to-feature couplings capture intrinsic data characteristics and …

Vulnerability Analysis And Security Framework For Zigbee Communication In Iot, Charbel Azzi

UNLV Theses, Dissertations, Professional Papers, and Capstones

Securing IoT (Internet of Things) systems in general, regardless of the communication technology used, has been the concern of many researchers and private companies. As for ZigBee security concerns, much research and many experiments have been conducted to better predict the nature of potential security threats. In this research we are addressing several ZigBee vulnerabilities by performing first hand experiments and attack simulations on ZigBee protocol. This will allow us to better understand the security issues surveyed and find ways to mitigate them. Based on the attack simulations performed and the survey conducted, we have developed a ZigBee IoT framework …

On Path Consistency For Binary Constraint Satisfaction Problems, Christopher G. Reeson

School of Computing: Dissertations, Theses, and Student Research

Constraint satisfaction problems (CSPs) provide a flexible and powerful framework for modeling and solving many decision problems of practical importance. Consistency properties and the algorithms for enforcing them on a problem instance are at the heart of Constraint Processing and best distinguish this area from other areas concerned with the same combinatorial problems. In this thesis, we study path consistency (PC) and investigate several algorithms for enforcing it on binary finite CSPs. We also study algorithms for enforcing consistency properties that are related to PC but are stronger or weaker than PC.

We identify and correct errors in the literature …

Towards Building A Review Recommendation System That Trains Novices By Leveraging The Actions Of Experts, Shilpa Khanal

School of Computing: Dissertations, Theses, and Student Research

Online reviews increase consumer visits, increase the time spent on the website, and create a sense of community among the frequent shoppers. Because of the importance of online reviews, online retailers such as Amazon.com and eOpinions provide detailed guidelines for writing reviews. However, though these guidelines provide instructions on how to write reviews, reviewers are not provided instructions for writing product-specific reviews. As a result, poorly-written reviews are abound and a customer may need to scroll through a large number of reviews, which could be up to 6000 pixels down from the top of the page, in order to find …

Hashtag Recommendation With Topical Attention-Based Lstm, Yang Li, Ting Liu, Jing Jiang, Liang Zhang

Research Collection School Of Computing and Information Systems

Microblogging services allow users to create hashtags to categorize their posts. In recent years,the task of recommending hashtags for microblogs has been given increasing attention. However,most of existing methods depend on hand-crafted features. Motivated by the successful use oflong short-term memory (LSTM) for many natural language processing tasks, in this paper, weadopt LSTM to learn the representation of a microblog post. Observing that hashtags indicatethe primary topics of microblog posts, we propose a novel attention-based LSTM model whichincorporates topic modeling into the LSTM architecture through an attention mechanism. Weevaluate our model using a large real-world dataset. Experimental results show that …

A Multi-Value Sequence Generated By Power Residue Symbol And Trace Function Over Odd Characteristic Field, Yasuyuki Nogami, Satoshi Uehara, Kazuyoshi Tsuchiya, Nasima Begum, Hiroto Ino, Robert Morelos-Zaragoza

Faculty Publications

This paper proposes a new multi-value sequence generated by utilizing primitive element, trace, and power residue symbol over odd characteristic finite field. In detail, let p and k be an odd prime number as the characteristic and a prime factor of p-1, respectively. Our proposal generates k-value sequence T={ti | ti=fk(Tr(ωi)+A)}, where ω is a primitive element in the extension field $\F{p}{m}$, Tr(⋅) is the trace function that maps $\F{p}{m} \rightarrow \f{p}$, A is a non-zero scalar in the prime field $\f{p}$, and fk(⋅) is a certain mapping function based on k-th power residue symbol. Thus, the proposed sequence has …

Just In Time Assembly (Jita) - A Run Time Interpretation Approach For Achieving Productivity Of Creating Custom Accelerators In Fpgas, Sen Ma

Graduate Theses and Dissertations

The reconfigurable computing community has yet to be successful in allowing programmers to access FPGAs through traditional software development flows. Existing barriers that prevent programmers from using FPGAs include: 1) knowledge of hardware programming models, 2) the need to work within the vendor specific CAD tools and hardware synthesis. This thesis presents a series of published papers that explore different aspects of a new approach being developed to remove the barriers and enable programmers to compile accelerators on next generation reconfigurable manycore architectures. The approach is entitled Just In Time Assembly (JITA) of hardware accelerators. The approach has been defined …