Civil and Environmental Engineering Commons^™

Missouri River Recovery Program Emergent Sandbar Habitat Annual Adaptive Management Report, Year 1, 2010)

United States Army Corps of Engineers, Omaha District

This Adaptive Management (AM) Report for Emergent Sandbar Habitat (ESH) represents the first complete iteration within the draft AM strategy being implemented for the interior least terns (Sternula antillarum) and piping plovers (Charadrius melodus) within the Missouri River Mainstem System based on the 2003 Amended Biological Opinion (BiOp). Please refer to the ESH AM Strategy - Appendix H of the Draft ESH Programmatic Environmental Impact Statement (PEIS) – and the Missouri River Recovery Program (MRRP) AM Process Framework for detailed background information on the overall scope and approach of this effort. Also note that as more …

Missouri River Recovery Program: Adaptive Management Process Framework, Joe Bonneau, Tim Fleeger, Craig Flemming, Carol Hale, Mike Anderson, Kate Buenau, Tim L. Hiller, Doug Latka, Ron Thom, Drew Tyre, Steve Fischer, Casey Kruse, Brad Thompson

United States Army Corps of Engineers, Omaha District

The purpose of this Adaptive Management (AM) Process Framework is to describe the AM process for the U.S. Army Corps of Engineers (USACE) Missouri River Recovery Program (MRRP) and explain how AM principles will be used in the MRRP to reduce uncertainty and ensure that Program objectives are achieved over time. The AM Process Framework is intended to be broad so that it can be applied to all aspects of the MRRP and be understood by a diverse audience of managers, federal and state agencies, scientists, engineers, the Missouri River Recovery Implementation Committee (MRRIC), stakeholders, Tribes, and the public.

Evaluation Of Select Sensors For Real-Time Monitoring Of Escherichia Coli In Water Distribution Systems, Syreeta L. Miles, Ryan G. Sinclair, Mark R. Riley, Ian L. Pepper

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This study evaluated real-time sensing of Escherichia coli as a microbial contaminant in water distribution systems. Most sensors responded to increased E. coli concentrations, showing that select sensors can detect microbial water quality changes and be utilized as part of a contaminant warning system.

Biological Approaches For Addressing The Grand Challenge Of Providing Access To Clean Drinking Water, Mark R. Riley, Charles P. Gerba, Menachem Elimelech

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The U.S. National Academy of Engineering (NAE) recently published a document presenting “Grand Challenges for Engineering”. This list was proposed by leading engineers and scientists from around the world at the request of the U.S. National Science Foundation (NSF). Fourteen topics were selected for these grand challenges, and at least seven can be addressed using the tools and methods of biological engineering. Here we describe how biological engineers can address the challenge of providing access to clean drinking water. This issue must be addressed in part by removing or inactivating microbial and chemical contaminants in order to properly deliver water …

Development Of An Angular Scanning System For Sensing Vertical Profiles Of Soil Electrical Conductivity, Viacheslav Adamchuk, Ahmad S. Mat Su, Roger A. Eigenberg, Richard B. Ferguson

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Apparent soil electrical conductivity (EC_a) is typically mapped to define soil spatial variability within an agricultural field. Knowledge of the vertical variability of EC_a is desired to define the site‐specific behavior of the soil profile. A pneumatic angular scanning system (PASS) was developed to sense horizontal and vertical changes of EC_a on‐the‐go with an electromagnetic induction (EMI) instrument using an angular scanning method. This sensor system consists of a sled with a rotating mechanism, an EMI sensor, an inclinometer, and a pneumatic actuator. The system was evaluated at the University of Nebraska‐Lincoln Agricultural Research and Development …

Improved Soil Mixing And Delivery System For A Storm Runoff Simulator, William C. Alms, Thomas G. Franti, David P. Shelton

Department of Agricultural and Biological Systems Engineering: Faculty Publications

An earlier version of a storm runoff simulator to test conservation buffers reproduced target hydrographs and sedigraphs using uniform, fine sand; however, it was unable to uniformly mix and deliver native sediment. The objectives of this work reported were to create a method to process native agricultural sediment, mix a uniform sediment slurry at a target concentration, and create a control system that will deliver the slurry in varying flow rates corresponding to a target sedigraph. Eroded silty clay (14% sand) was scraped, dried, and processed with a hammer mill. A sand (93% sand) and loam (44% sand) were dried …

Identification Of Holocarboxylase Synthetase Chromatin Binding Sites In Human Mammary Cell Lines Using The Damid Technology, Dipika Singh, Angela K. Pannier, Janos Zempleni

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Holocarboxylase synthetase (HCS) is a chromatin protein that is essential for mediating the covalent binding of biotin to histones. Biotinylation of histones plays crucial roles in the repression of genes and repeats in the human genome. We tested the feasibility of DNA adenine methyltransferase identification (DamID) technology to map HCS binding sites in human mammary cell lines. Full-length HCS was fused to Dam for subsequent transfection into breast cancer (MCF-7) and normal breast (MCF-10A) cells. HCS docking sites in chromatin were identified by using the unique adenine methylation sites established by Dam in the fusion construct; docking sites were unambiguously …

Flocculation Of Wall-Deficient Cells Of Chlamydomonas Reinhardtii Mutant Cw15 By Calcium And Methanol, Matt Scholz, Takanori Hoshino, Mark R. Riley, Joel Cuello

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Flocculation is a common and inexpensive method for harvesting algae from solution. After nitrogen starvation, it was shown that 83 + 3% of the wall-deficient cells of the cw 15 mutant of Chlamydomonas reinhardtii flocculated from 12 mL samples within 15 min after the addition of 15 mM calcium chloride at pH 8.4. Only 24 2% of the wildtype strain flocculated under these conditions, thus demonstrating how a simple mutation might facilitate process design. The data suggested that algae grown in waters with similar calcium concentrations (e.g. certain wastewaters) might be harvested through simple pH adjustment. It was also discovered …

Performance Of Extended Shuttleworth‐Wallace Model For Estimating And Partitioning Of Evapotranspiration In A Partial Residue‐Covered Subsurface Drip‐Irrigated Soybean Field, Lameck O. Odhiambo, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Estimation of actual evapotranspiration (ET), especially its partitioning into plant transpiration (T) and soil evaporation (E), in agricultural fields is important for effective soil water management and conservation and for understanding the interactions between ET, T, and E with the management practices. Direct field measurements of ET, T, and E rates are difficult and costly; hence, mathematical models are used for estimating them. The objective of this study was to evaluate the practical applicability of the Shuttleworth‐Wallace (S‐W) model to estimate and partition ET in a subsurface drip‐irrigated soybean (Glycine max L. Merr.) field with partial residue cover. While its …

Irrigation Efficiency And Uniformity, And Crop Water Use Efficiency, Suat Irmak, Lameck O. Odhiambo, William L. Kranz, Dean E. Eisenhauer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This Extension Circular describes various irrigation efficiency, crop water use efficiency, and irrigation uniformity evaluation terms that are relevant to irrigation systems and management practices currently used in Nebraska, in other states, and around the world. The definitions and equations described can be used by crop consultants, irrigation district personnel, and university, state, and federal agency personnel to evaluate how efficiently irrigation water is applied and/or used by the crop, and can help to promote better or improved use of water resources in agriculture.

As available water resources become scarcer, more emphasis is given to efficient use of irrigation water …

A Case Study Concerning The Effects Of Controller Response And Turning Movements On Application Rate Uniformity With A Self-Propelled Sprayer, Joe D. Luck, A. Sharda, Santosh Pitla, J. P. Fulton, S. A. Shearer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The use of precision agriculture technologies such as automatic boom section control allows producers to reduce off-target application when applying herbicides. While automatic boom section control provides benefits, pressure differences across the spray boom resulting from boom section actuation may lead to off-rate application errors. Off-rate errors may also result from spray rate controller compensation for ground speed changes or velocity variation across the spray boom during turning movements. This project focused on characterizing application rate variation for three fields located in central Kentucky. GPS coordinates, boom control status, and nozzle pressure data (at 15 nozzle locations) were recorded as …

Glypican-3 Targeting Of Liver Cancer Cells Using Multifunctional Nanoparticles, James O. Park, Zachary Stephen, Conory Sun, Omid Veiseh, Forrest M. Kievit, Chen Fang, Matthew Leung, Hyejung Mok, Miqin Zhang

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Imaging is essential in accurately detecting, staging, and treating primary liver cancer (hepatocellular carcinoma [HCC]), one of the most prevalent and lethal malignancies. We developed a novel multifunctional nanoparticle (NP) specifically targeting glypican-3 (GPC3), a proteoglycan implicated in promotion of cell growth that is overexpressed in most HCCs. Quantitative real-time polymerase chain reaction was performed to confirm the differential GPC3 expression in two human HCC cells, Hep G2 (high) and HLF (negligible). These cells were treated with biotin-conjugated GPC3 monoclonal antibody (aGPC3) and subsequently targeted using superparamagnetic iron oxide NPs conjugated to streptavidin and Alexa Fluor 647. Flow cytometry demonstrated …

Impact Of Signal Timing Information On Safety And Efficiency Of Signalized Intersections, Anuj Sharma

Department of Civil and Environmental Engineering: Faculty Publications

Signalized intersections are provided in traffic networks to improve the safety and efficiency of vehicular and pedestrian movement. There are various measures under education, enforcement and engineering headings that are being attempted to improve safety and efficiency of operations at a signalized intersection. Provision of signal countdown timer, a timer showing the remaining red and green time in a phase, is one such measure and is commonly adopted in India. However, studies on effects of countdown timer under Indian traffic conditions are very scarce. Traffic heterogeneity and lack of lane discipline makes transferability of models developed in other countries (with …

Role Of Information On Probability Of Traffic Conflict On The Onset Of Yellow, Nathaniel P. Burnett, Anuj Sharma

Department of Civil and Environmental Engineering: Faculty Publications

This paper examines the effect of information provided to drivers through advance warning flashers (AWFs) on driver’s probability of conflict at the onset of yellow at a high-speed intersection. AWFs are specifically designed to minimize the number of vehicles trapped in their respective dilemma zones at the onset of yellow. A probit modeling technique was used to establish dilemma zone boundaries. Based on the dilemma zone boundaries probability of a perceived conflict curves was computed and compared against actual conflicts observed at each of the studied intersections. The comparison between the actual and theoretical probability of conflict curves generated a …

Role Of Information On Probability Of Traffic Conflict On The Onset Of Yellow, Nathaniel P. Burnett, Anuj Sharma

Department of Civil and Environmental Engineering: Faculty Publications

This paper examines the effect of information provided to drivers through advance warning flashers (AWFs) on driver’s probability of conflict at the onset of yellow at a high-speed intersection. AWFs are specifically designed to minimize the number of vehicles trapped in their respective dilemma zones at the onset of yellow. A probit modeling technique was used to establish dilemma zone boundaries. Based on the dilemma zone boundaries probability of a perceived conflict curves was computed and compared against actual conflicts observed at each of the studied intersections. The comparison between the actual and theoretical probability of conflict curves generated a …

Analysis Of Existing Work-Zone Sign Supports Using Manual For Assessing Safety Hardware Safety Performance Criteria, Jennifer D. Schmidt, Ronald K. Faller, Karla A. Lechtenberg, Dean L. Sicking

Department of Civil and Environmental Engineering: Faculty Publications

Over the years, numerous work-zone, portable sign support systems have been successfully crash tested according to the Test Level 3 safety performance guidelines provided in the National Cooperative Highway Research Program Report 350 and accepted for use along our nation’s highways. For this study, several crashworthy sign support systems were analyzed to predict their safety performance according to the new evaluation criteria provided in the Manual for Assessing Safety Hardware (MASH). More specifically, this analysis was conducted to determine which hardware parameters negatively affect a system’s safety performance. To verify the accuracy of the analysis, eight systems, four with the …

Detection And Quantification Of Poliovirus Infection Using Ftir Spectroscopy And Cell Culture, Felipe T. Lee-Montiel, Kelly A. Reynolds, Mark R. Riley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Background: In a globalized word, prevention of infectious diseases is a major challenge. Rapid detection of viable virus particles in water and other environmental samples is essential to public health risk assessment, homeland security and environmental protection. Current virus detection methods, especially assessing viral infectivity, are complex and time-consuming, making point-of-care detection a challenge. Faster, more sensitive, highly specific methods are needed to quantify potentially hazardous viral pathogens and to determine if suspected materials contain viable viral particles. Fourier transform infrared (FTIR) spectroscopy combined with cellular-based sensing, may offer a precise way to detect specific viruses. This approach utilizes infrared …

Cellular Arrays For Large-Scale Analysis Of Transcription Factor Activity, Abigail D. Bellis, Beatriz Peňalver-Bernabé, Michael S. Weiss, Michael E. Yarrington, Maria V. Barbolina, Angela K. Pannier, Jacqueline S. Jeruss, Linda J. Broadbelt, Lonnie D. Shea

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Identifying molecular mechanisms or therapeutic targets is typically based on large-scale cellular analysis that measures the abundance of mRNA or protein; however, abundance does not necessarily correlate with activity. We report a method for direct large-scale quantification of active pathways that employs a cellular array with parallel gene delivery of constructs that report pathway activity. The reporter constructs encode luciferase, whose expression is influenced by binding of transcription factors (TFs), which are the downstream targets of signaling pathways. Luciferase levels are quantified by bioluminescence imaging (BLI), which allows for rapid, noninvasive measurements. Activity profiles by BLI of 32 TFs were …

Microarray Analysis Of Gene Expression Profiles In Cells Transfected With Nonviral Vectors, Sarah A. Plautz, Gina Boanca, Jean-Jack M. Riethoven, Angela K. Pannier

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Inefficient gene delivery is a critical factor limiting the use of nonviral methods in therapeutic applications including gene therapy and tissue engineering. There have been few efforts to understand or engineer the molecular signaling pathways that dictate the efficacy of gene transfer. Microarray analysis was used to determine endogenous gene expression profiles modulated during nonviral gene transfer. Nonviral DNA lipoplexes were delivered to HEK 293T cells. Flow cytometry was used to isolate a population of transfected cells. Expression patterns were compared between transfected and nontransfected samples, which revealed three genes that were significantly upregulated in transfected cells, including RAP1A, …

Improving The Characterization Of Initial Condition For Ensemble Streamflow Prediction Using Data Assimilation, Caleb Matthew Dechant, Hamid Moradkhani

Civil and Environmental Engineering Faculty Publications and Presentations

Within the National Weather Service River Forecast System, water supply forecasting is performed through Ensemble Streamflow Prediction (ESP). ESP relies both on the estimation of initial conditions and historically resampled forcing data to produce seasonal volumetric forecasts. In the western US, the accuracy of initial condition estimation is particularly important due to the large quantities of water stored in mountain snowpack. In order to improve the estimation of snow quantities, this study explores the use of ensemble data assimilation. Rather than relying entirely on the model to create single deterministic initial snow water storage, as currently implemented in operational forecasting, …

Circulation, Sediment Concentration And Oxygen Depletion In The Tidal Ems River, Stefan A. Talke, Huib E. De Swart

Civil and Environmental Engineering Faculty Publications and Presentations

We present measurements which show that the tidal Ems River in Germ any is extremely muddy over a 30 km + turbid zone, with fluid mud o f 1-2 m thickness covering the bed with suspended sediment concentrations (SSC) o f greater than 50 kg.m^-3. Moreover, we show that these elevated SSC contain large quantities of organic material which deplete dissolved oxygen (DO) and produce summertime hypoxic zones. Using mathematical modeling, we develop simplified representations o f the estuary physics that reproduce the tidally-averaged circulation, SSC distribution, and oxygen depletion. These models show that SSC and oxygen concentrations …

Freight Distribution Problems In Congested Urban Areas: Fast And Effective Solution Procedures To Time-Dependent Vehicle Routing Problems, Miguel A. Figliozzi

Civil and Environmental Engineering Faculty Publications and Presentations

Congestion is a common phenomenon in all medium to large cities of the world. Reliability of freight movement in urban areas is an important issue to manufacturing or service companies whose operation is based in just-in-time approaches. These companies tend to provide high value or time sensitive products/services. As congestion increases, carriers face increasing challenges to satisfy their time sensitive customers in an economical way. Route designs or schedules which require long computation times or ignore travel time variations will result in inefficient and suboptimal solutions. Poorly designed routes that lead freight vehicles into congested arteries and streets not only …

Low Flow Forecasting With A Lead Time Of 14 Days For Navigation And Energy Supply In The Rhine River, Mehmet C. Demirel, Martijn Booij

Civil and Environmental Engineering Faculty Publications and Presentations

Low flow forecasting, days or even months in advance, is particularly important to the efficient operation of power plants and freight shipment. This study presents a low flow forecasting model with a lead time of 14 days for the Rhine River. The forecasts inherit uncertainty sources mainly because of model parameterization. Therefore, a systematic uncertainty analysis is applied to indicate the major uncertainty sources in the results. Firstly, the Rhine basin is divided into 7 major sub-basins. Each sub-basin is modeled separately with a data-driven model and the output discharges are routed to Lobith after German-Dutch border with another data-driven …

Uncertainty Analysis Of A Low Flow Model For The Rhine River, Mehmet C. Demirel, Martijn Booij

Civil and Environmental Engineering Faculty Publications and Presentations

It is widely recognized that hydrological models are subject to parameter uncertainty. However, little attention has been paid so far to the uncertainty in parameters of the data-driven models like weights in neural networks. This study aims at applying a structured uncertainty analysis to a data-driven model for low flow forecasting with a lead time of 14 days in the Rhine River. In the modeling phase, the Rhine basin is divided into seven major sub-basins. Each sub-basin is modeled separately with a data-driven model and the output discharges were routed to Lobith with another data-driven model. Basin averaged precipitation, basin …

Highway Safety Investigation Manual For The Oregon Department Of Transportation, Karen Dixon, Christopher Monsere

Civil and Environmental Engineering Faculty Publications and Presentations

Across the state, region, and nation highway safety investigators have developed a wide variety of tools and techniques for highway safety investigation procedures. Analysis techniques can range from systematic evaluation approaches such as the Oregon Department of Transportation’s (ODOT’s) Safety Priority Index System (SPIS) down to specific localized safety assessment strategies. It is important to develop consistent methods for safety evaluations across Oregon to ensure that safety investigations are conducted in a similar manner. It is also important to develop a screening process for proper highway safety investigations and document the procedures used for this assessment.

The objective of this …

Evaluation Of Quikscat Data For Monitoring Vegetation Phenology, Doralee Pellot

Dissertations and Theses

No abstract provided.

Towards A Better Monitoring Of Soil Moisture Using A Combination Of Estimates From Passive Of Microwave And Infrared Observations, Zulamet Z. Vega-Martinez

Dissertations and Theses

No abstract provided.

Validation Of Noaa Interactive Snow Maps In The North American Region With National Climatic Data Center Ground-Based Data, Christine Chen

Dissertations and Theses

"Both the areal coverage of snow and the volume of water in its subsequent melt are of concern for the creation and maintenance of both hydroelectric power and local water supply. The interactive multisensor snow and ice mapping system (IMS) is a geographic interactive system that allows for both the viewing of various sensor data and the mapping daily both snow and sea ice extent by an analyst on one platform. This thesis investigates the agreement between the National Oceanic and Atmospheric Administration’s (NOAA) interactive multisensor snow and ice mapping system (IMS) and snow depth values obtained from the National …

High-Resolution Numerical Simulation Of Tidal Enegry Distribution Along The New Jersey Coastline And Influence Of Sea-Level Rise, Simon Kraatz

Dissertations and Theses

No abstract provided.

Energy Efficiency Technologies For Buildings: Potential For Energy, Cost, And Carbon Emission Savings, Bukola S. Jimoh

CMC Senior Theses

Buildings are a significant energy consumer and are responsible for an increasingly large percent of worldwide greenhouse gas emissions, currently between 30 and 40 percent. Energy efficiency presents unique opportunities for building owners to reduce their environmental footprint and add value through cost savings, tax deductions, and increased market value. An analysis of 183 samples of efficiency measures in seven technology categories found that 74% of efficiency investments had a positive net present value. Building automation system and chiller plant improvements had the highest mean energy and carbon dioxide savings per square foot. Additionally, building automation systems had, on average …