Civil and Environmental Engineering Commons^™

A Machine Learning Approach For Improving Near-Real-Time Satellite-Based Rainfall Estimates By Integrating Soil Moisture, Ashish Kumar, Raaj Ramsankaran, Luca Brocca, Francisco Munoz-Arriola

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Near-real-time (NRT) satellite-based rainfall estimates (SREs) are a viable option for flood/drought monitoring. However, SREs have often been associated with complex and nonlinear errors. One way to enhance the quality of SREs is to use soil moisture information. Few studies have indicated that soil moisture information can be used to improve the quality of SREs. Nowadays, satellite-based soil moisture products are becoming available at desired spatial and temporal resolutions on an NRT basis. Hence, this study proposes an integrated approach to improve NRT SRE accuracy by combining it with NRT soil moisture through a nonlinear support vector machine-based regression (SVR) …

High-Speed, High-Frequency Ultrasound, In Utero Vector-Flow Imaging Of Mouse Embryos, Jeffrey A. Ketterling, Orlando Aristizabal, Billy Y. S. Yiu, Daniel H. Turnbull, Colin K. L. Phoon, Alfred C. H. Yu, Ronald H. Silverman

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Real-time imaging of the embryonic murine cardiovascular system is challenging due to the small size of the mouse embryo and rapid heart rate. High-frequency, linear-array ultrasound systems designed for small-animal imaging provide high-frame-rate and Doppler modes but are limited in regards to the field of view that can be imaged at fine-temporal and -spatial resolution. Here, a plane-wave imaging method was used to obtain high-speed image data from in utero mouse embryos and multi-angle, vector-flow algorithms were applied to the data to provide information on blood flow patterns in major organs. An 18-MHz linear array was used to acquire plane-wave …

Factors Related To Intra-Tendinous Morphology Of Achilles Tendon In Runners, Kai-Yu Ho, Ari Baquet, Yu-Jen Chang, Lung-Chang Chien, Michelle Harty, Gregory Bashford, Kornelia Kulig

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The purpose of this study was to determine and explore factors (age, sex, anthropometry, running and injury/pain history, tendon gross morphology, neovascularization, ankle range of motion, and ankle plantarflexor muscle endurance) related to intra-tendinous morphological alterations of the Achilles tendon in runners. An intra-tendinous morphological change was defined as collagen fiber disorganization detected by a low peak spatial frequency radius (PSFR) obtained from spatial frequency analysis (SFA) techniques in sonography. Ninety-one runners (53 males and 38 females; 37.9 ± 11.6 years) with 8.8 ± 7.3 years of running experience participated. Height, weight, and waist and hip circumferences were recorded. Participants …

A Role For Nanoparticles In Treating Traumatic Brain Injury, Badrul Alam Bony, Forrest M. Kievit

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Traumatic brain injury (TBI) is one of the main causes of disability in children and young adults, as well as a significant concern for elderly individuals. Depending on the severity, TBI can have a long-term impact on the quality of life for survivors of all ages. The primary brain injury can result in severe disability or fatality, and secondary brain damage can increase the complexities in cellular, inflammatory, neurochemical, and metabolic changes in the brain, which can last decades post-injury. Thus, survival from a TBI is often accompanied by lifelong disabilities. Despite the significant morbidity, mortality, and economic loss, there …

Rapeseed Seedling Stand Counting And Seeding Performance Evaluation At Two Early Growth Stages Based On Unmanned Aerial Vehicle Imagery, Biquan Zhao, Jian Zhang, Chenghai Yang, Guangsheng Zhou, Youchun Ding, Yeyin Shi, Dongyan Zhang, Jing Xie, Qingxi Liao

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The development of unmanned aerial vehicles (UAVs) and image processing algorithms for field-based phenotyping offers a non-invasive and effective technology to obtain plant growth traits such as canopy cover and plant height in fields. Crop seedling stand count in early growth stages is important not only for determining plant emergence, but also for planning other related agronomic practices. The main objective of this research was to develop practical and rapid remote sensing methods for early growth stage stand counting to evaluate mechanically seeded rapeseed (Brassica napus L.) seedlings. Rapeseed was seeded in a field by three different seeding devices. A …

Early Prediction Of Soybean Traits Through Color And Texture Features Of Canopy Rgb Imagery, Wenan Yuan, Nuwan Kumara Wijewardane, Shawn Jenkins, Geng Bai, Yufeng Ge, George L. Graef

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Global crop production is facing the challenge of a high projected demand, while the yields of major crops are not increasing at sufficient speeds. Crop breeding is an important way to boost crop productivity, however its improvement rate is partially hindered by the long crop generation cycles. If end-season crop traits such as yield can be predicted through early-season phenotypic measurements, crop selection can potentially be made before a full crop generation cycle finishes. This study explored the possibility of predicting soybean end-season traits through the color and texture features of early-season canopy images. Six thousand three hundred and eighty-three …

Heterologous Expression And Functional Characterization Of A Gh10 Endoxylanase From Aspergillus Fumigatus Var. Niveus With Potential Biotechnological Application, Josman Velasco, Bianca Oliva, Evandro Jose Mulinari, Leidy Patricia Quintero, Awana Da Silva Lima, Aline Larissa Goncalves, Thiago Augusto Goncalves, Andre Damasio, Fabio Marcio Squina, Adriane Maria Ferreira Milagres, Asmaa Abdella, Mark R. Wilkins, Fernando Segato

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Xylanases decrease the xylan content in pretreated biomass releasing it from hemicellulose, thus improving the accessibility of cellulose for cellulases. In this work, an endo-β-1,4-xylanase from Aspergillus fumigatus var. niveus (AFUMN-GH10) was successfully expressed. The structural analysis and biochemical characterization showed this AFUMN-GH10 does not contain a carbohydrate-binding module. The enzyme retained its activity in a pH range from 4.5 to 7.0, with an optimal temperature at 60°C. AFUMN-GH10 showed the highest activity in beechwood xylan. The mode of action of AFUMNGH10 was investigated by hydrolysis of APTS-labeled xylohexaose, which resulted in xylotriose and xylobiose as the main products. AFUMN-GH10 …

Time-Domain And Frequency-Domain Reflectometry Type Soil Moisture Sensor Performance And Soil Temperature Effects In Fine- And Coarse-Textured Soils, Y. Zhu, S. Irmak, A. J. Jhala, M. C. Vuran, A. Diotto

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The performances of six time-domain reflectometry (TDR) and frequency-domain reflectometry (FDR) type soil moisture sensors were investigated for measuring volumetric soil-water content (θ_v) in two different soil types. Soil-specific calibration equations were developed for each sensor using calibrated neutron probe-measured θ_v. Sensors were also investigated for their performance response in measuring θ_v to changes in soil temperature. The performance of all sensors was significantly different (P<0.05) than the neutron probe-measured θ_v, with the same sensor also exhibiting variation between soils. In the silt loam soil, the 5TE sensor had the lowest root mean squared error (RMSE) of 0.041 …

Optimization Of Process Parameters And Fermentation Strategy For Xylanase Production In A Stirred Tank Reactor Using A Mutant Aspergillus Nidulans Strain, Asmaa Abdella, Fernando Segato, Mark R. Wilkins

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The present work studied the optimization of aeration rate, agitation rate and oxygen transfer and the use of various batch fermentation strategies for xylanase production from a recombinant Aspergillus nidulans strain in a 3 L stirred tank reactor. Maximum xylanase production of 1250 U/mL with productivity of 313 U/mL/day was obtained under an aeration rate of 2 vvm and an agitation rate of 400 rpm using batch fermentation. The optimum volumetric oxygen transfer coefficient (kLa) for efficient xylanase production was found to be 38.6 h1. Fed batch mode and repeated batch fermentation was also performed with kLa was 38.6 h1. …

Antibiotic Resistance Gene Profile Changes In Cropland Soil After Manure Application And Rainfall, Morgan Meyers, Lisa Durso, John E. Gilley, Heidi Waldrip, Lana Castleberry, Amy Millmier Schmidt

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Land application of manure introduces gastrointestinal microbes into the environment, including bacteria carrying antibiotic resistance genes (ARGs). Measuring soil ARGs is important for active stewardship efforts to minimize gene flow from agricultural production systems; however, the variety of sampling protocols and target genes makes it difficult to compare ARG results between studies. We used polymerase chain reaction (PCR) methods to characterize and/or quantify 27 ARG targets in soils from 20 replicate, long-term no-till plots, before and after swine manure application and simulated rainfall and runoff. All samples were negative for the 10 b-lactamase genes assayed. For tetracycline resistance, only source …

Optimization Of Process Parameters And Fermentation Strategy For Xylanase Production In A Stirred Tank Reactor Using A Mutant Aspergillus Nidulans Strain, Asmaa Abdella, Fernando Segato, Mark R. Wilkins

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The present work studied the optimization of aeration rate, agitation rate and oxygen transfer and the use of various batch fermentation strategies for xylanase production from a recombinant Aspergillus nidulans strain in a 3 L stirred tank reactor. Maximum xylanase production of 1250 U/mL with productivity of 313 U/mL/day was obtained under an aeration rate of 2 vvm and an agitation rate of 400 rpm using batch fermentation. The optimum volumetric oxygen transfer coefficient (kLa) for efficient xylanase production was found to be 38.6 h-1. Fed batch mode and repeated batch fermentation was also performed with kLa was 38.6 h …

System For Optimizing Fed-Batch Hydrolysis Of Biomass, Chao Tai, Deepak R. Keshwani

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Provided herein is a system for optimizing the fed-batch hydrolysis of biomass.

System And Method For Monitoring Pleural Fluid, Dimitrios Miserlis, Kim Cluff, Abby M. Kelly, Suzanne J. Higgins, Max H. Twedt

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The disclosure is directed to intrapleural air leak detection and monitoring. According to various embodiments of the disclosure, an air leak may be detected utilizing at least one sensor to determine whether fluid extracted from a pleural cavity of a patient includes carbon dioxide and/or a second substance. The second substance may be a foreign substance inhaled by the patient to confirm presence of the air leak. The air leak may be further monitored over a period of time by collecting temporally successive measurements associated with detected concentrations of carbon dioxide. Therefore, tissue damage and recovery may be assessed according …

Hydrogen Peroxide Sensors For Biomedical Applications, Jakob Meier, Eric M. Hofferber, Joseph A. Stapleton, Nicole M. Iverson

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Hydrogen peroxide (H2O2) is an important molecule within the human body, but many of its roles in physiology and pathophysiology are not well understood. To better understand the importance of H2O2 in biological systems, it is essential that researchers are able to quantify this reactive species in various settings, including in vitro, ex vivo and in vivo systems. This review covers a broad range of H2O2 sensors that have been used in biological systems, highlighting advancements that have taken place since 2015.

Grain Yield, Crop And Basal Evapotranspiration, Production Functions And Water Productivity Response Of Drought-Tolerant And Non-Drought-Tolerant Maize Hybrids Under Different Irrigation Levels, And Population Densities: Part I. In Western Nebraska's Semi-Arid Environments, Ali T. Mohammed, Suat Irmak, William Kranz, Simon Van Donk, C. Dean Yonts

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Grain yield, crop evapotranspiration (ETc), basal evapotranspiration (ETb), ETc-yield production functions (ETYPF), and crop water use efficiency (CWUE) response of three drought-tolerant (DT) and one non-drought-tolerant (NDT) maize (Zea mays L.) hybrids to two plant population densities (PPDs) [84,000 plants ha-1 (high PPD) and 59,300 plants ha-1 (low PPD)] and three irrigation levels were researched at two semi-arid locations: North Platte (WCREC) and Scottsbluff (MAL), Nebraska, in 2010, 2011, and 2012. The irrigation levels were fully irrigated (FIT), early cutoff (ECOT), and rainfed (RFT). Precipitation in 2010 was above average, 2011 was a normal year, and 2012 was one of …

Damage Assessment Of A Sixteen Story Building Following The 2017 Central Mexico Earthquake, Yijun Liao, Richard L. Wood, M Ebrahim Mohammadi, Kanchan Devkota, Christine E. Wittich

Department of Civil and Environmental Engineering: Faculty Publications

The 2017 M7.1 Central Mexico Earthquake caused significant infrastructural damage in the Mexico City area. The earthquake contained a significant pulse in the long period, resulting in numerous buildings severely damaged or collapsed. This paper discusses a reinforced concrete building which was still partially occupied post-earthquake. The building’s interior walls were examined to have substantial damage, including some extensive cracking. In January 2018, the authors visited the structure and collected detailed assessment data. The data collection included ground-based lidar scans and recorded ambient vibrations of the damaged structure using accelerometers. Eleven scans were collected from the four exterior facades to …

Degradation Of Methylene Blue With Magnetic Co-Doped Fe3O4@Feooh Nanocomposites As Heterogeneous Catalysts Of Peroxymonosulfate, Kai Wang, Yi Yang, Tian C. Zhang, Ying Liang, Qingguo Wang

Department of Civil and Environmental Engineering: Faculty Publications

Magnetic Co-doped Fe₃O₄@FeOOH nanocomposites were prepared in one step using the hydrothermal synthesis process for catalyzing peroxymonosulfate (PMS) to degrade refractory methylene blue (MB) at a wide pH range (3.0–10.0). The catalysts' physiochemical properties were characterized by different equipment; Fe³⁺/Fe²⁺ and Co³⁺/Co²⁺ were confirmed to coexist in the nanocomposite by X-ray photoelectron spectroscopy. The nanocomposite effectively catalyzed PMS's decoloration (99.2%) and mineralization (64.7%) of MB. The formation of Co/Fe–OH complexes at the surface of nanoparticles was proposed to facilitate heterogeneous PMS activation. Compared with the observation for Fe₃O …

Modeled And Measured Ecosystem Respiration In Maize–Soybean Systems Over 10 Years, Ming Zhan, Adam Liska, Anthony Nguy-Robertson, Andrew E. Suyker, Matthew P. Pelton, Haishun Yang

Adam Liska Papers

Crop residue is an abundant resource for the potential production of biofuels, but a better understanding of its use on net carbon emissions must be developed to mitigate climate change. This analysis combines two established crop growth models (Hybrid-Maize and SoySim) with a simple soil and crop residue respiration model to estimate daily ecosystem respiration (ERe) from maize and soybean; ERe was estimated to be the sum of CO₂ emissions from the oxidation of the growing crop, crop residue, and soil organic carbon (SOC). Model-estimated CO₂ fluxes from irrigated continuous maize and irrigated maize–soybean cropping systems in eastern …

Microcontroller Based Granular Urea Application Attachment For Rice Transplanter, Md Towfiqur Rahman, Md Monjurul Alam, Md Mosharraf Hossain, Muhammad Rashed Al Mamun

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Transplanting and fertilizer application for rice production in Bangladesh are tedious, time consuming and laborious task, and mostly done manually. Mechanical transplanting of rice becoming popular in the country in recent years and few machines have been developed for granular urea deep placement, however, having some limitations. Placing granular urea precisely along with rice transplanting, an attempt was under taken to design and fabricate an electronic control granular urea applicator to be attach with a 4-row walk behind type rice transplanter. Fabrication of the electronic granular urea applicator was done in the workshop of the Department of Farm Power and …

Preface: Earth Observation For Integrated Water And Basin Management: Challenges For Adaptation To A Changing Environment, María J. Polo, Maria P. González-Dugo, Christopher M.U. Neale

Daugherty Water for Food Global Institute: Faculty Publications

Integrated river basin management involves a sound knowledge of water and land interactions, and impacts from and feedbacks to human activity. Remote sensing has been an efficient and increasingly promising means of gathering direct information of the Earth surface, as well as information on water and energy fluxes. The recent generation of high-resolution sensors offers a huge potential for monitoring, assessing, and modelling our changing environment in a context of uncertainty about how future climate conditions will affect the current water resource and basin management framework. Moreover, large amounts of data are now available posing a challenging opportunity to the …

Riverbank Filtration Impacts On Post Disinfection Water Quality In Small Systems—A Case Study From Auburn And Nebraska City, Nebraska, Matteo D'Alessio, Bruce Dvorak, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

Small water systems can experience a fluctuating quality of water in the distribution system after disinfection. As chlorine is the most common disinfectant for small systems, the occurrence of disinfection byproducts (DBPs) represents a common problem for these systems. Riverbank filtration (RBF) can be a valuable solution for small communities located on riverbanks. The objectives of this study were to evaluate (i) the improvements in water quality at two selected RBF systems, and (ii) the potential lower concentrations of DBPs, in particular, trihalomethanes (THMs), in small systems that use RBF. Two small communities in Nebraska, Auburn and Nebraska City, using …

Flow Analysis Through Collectorwell Laterals: A Case Study From Sonoma County Water Agency, California, Matteo D'Alessio, John Lucio, Ernest Williams, Donald Seymour, Jay Jasperse, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

The Sonoma County Water Agency (SWCA) uses six radial collector wells along the Russian River west of Santa Rosa, to provide water for several municipalities and water districts in north-western California. Three collector wells (1, 2, and 6) are located in the Wohler area, and three collector wells (3, 4, and 5) are located in the Mirabel area. The objective of this paper is to highlight the performance of the three collector wells located in the Mirabel area since their construction. The 2015 investigation showed a lower performance of Collectors 3 and 4 compared to their original performances after construction …

Assessing The Feasibility Of Soil Infiltration Trenches For Highway Runoff Control On The Island Of Oahu, Hawaii, Martina Sobotkova, Jaromir Dusek, Ghasem Alavi, Laxman Sharma, Chittaranjan Ray

Daugherty Water for Food Global Institute: Faculty Publications

The coastal waters of Hawaii are extremely important for recreation as well as for the health of the marine environment. Non-point source pollution from storm runoff poses a great threat to surface water quality in Hawaii. The State of Hawaii Department of Transportation (HDOT) includes infiltration trenches as a best management practice (BMP) option to reduce pollution caused by stormwater runoff. HDOT guidelines state that the implementation of BMPs is needed to reduce sediment and pollutant loads to streams and the ocean. In this study, the suitability of soils adjacent to highways on Oahu for the siting of infiltration trenches …

Transition Pathways To Sustainable Agricultural Water Management: A Review Of Integrated Modeling Approaches, Erin M.K. Haacker, Vaishali Sharda, Amanda M. Cano, R. Aaron Hrozencik, Agustin Nunez, Zachary Zambreski, Soheil Nozari, Garvey Engulu B, Smith, Lacey Moore, Sumit Sharma, Prasanna Gowda, Chittaranjan Ray, Meagan Schipanski, Reagan Waskom

Nebraska Water Center: Faculty Publications

Agricultural water management (AWM) is an interdisciplinary concern, cutting across traditional domains such as agronomy, climatology, geology, economics, and sociology. Each of these disciplines has developed numerous process-based and empirical models for AWM. However, models that simulate all major hydrologic, water quality, and crop growth processes in agricultural systems are still lacking. As computers become more powerful, more researchers are choosing to integrate existing models to account for these major processes rather than building new cross-disciplinary models. Model integration carries the hope that, as in a real system, the sum of the model will be greater than the parts. However, …

Simulating The Impacts Of Irrigation Levels On Soybean Production In Texas High Plains To Manage Diminishing Groundwater Levels, Vaishali Sharda, Prasanna H. Gowda, Gary Marek, Isaya Kisekka, Chittaranjan Ray, Pradip Adhikari

Nebraska Water Center: Faculty Publications

There is an increasing need to strategize and plan irrigation systems under varied climatic conditions to support efficient irrigation practices while maintaining and improving the sustainability of groundwater systems. This study was undertaken to simulate the growth and production of soybean [Glycine max (L.)] under different irrigation scenarios. The objectives of this study were to calibrate and validate the CROPGRO-Soybean model under Texas High Plains’ (THP) climatic conditions and to apply the calibrated model to simulate the impacts of different irrigation levels and triggers on soybean production. The methodology involved combining short-term experimental data with long-term historical weather data (1951–2012), …

Energy Demand And Water Footprint Study Of An Agricultural Machinery Industry, Mantoam E,J., Mesfin Mekonnen, T.L. Romanelli

Daugherty Water for Food Global Institute: Faculty Publications

The intensification of agricultural production systems demands power, supplied by agricultural machinery, besides more agricultural inputs such as fertilizers, pesticides and seeds. Agricultural mechanization provides increase in the global production of food, fiber and bioenergy; and it brought economic benefits to producers, but causing larger energy consumption. Energy embodiment in agricultural machinery has been done in earlier studies, but data usually are from car industry. This study aimed to determine the energy demand and water footprint in a plant that assembles five types of agricultural machinery from a multinational manufacturer located in Piracicaba municipality in Sao Paulo state, Brazil. That …

Detection Of Multiple Flaws In Concrete Bridge Decks Using Ultrasonic Wave Propagation, Ece Erdogmus, Eric Garcia, Michael Schuller, Donald Harvey, Kelsey Stithem, Monica Houck

Nebraska Department of Transportation: Research Reports

No abstract provided.

Offset Right-Turn Lanes On State Highway Systems, Aemal J. Khattak, Yashu Kang

Nebraska Department of Transportation: Research Reports

This research focused on two aspects related to Offset Right Turn Lanes (ORTLs) on Nebraska state highway two-way stop-controlled intersections. The first was the crash safety and economic benefits of ORTLs compared to intersections with no right turn lanes or traditional right turn lanes. The second was driver stopping behavior at stop signs at two-way stop-controlled intersections equipped with ORTLs. The research team reviewed information from various published studies, analyzed crash data reported at 47 two-way stop-controlled intersections as well as collected and analyzed driver stopping behavior at six ORTLs in Nebraska. Traffic volume and reported crashes during 2012-2015 were …

Evaluation Of Deformable Posts In The Zoi And Rigid Posts In Stiff Soil, Thomas Ammon

Department of Engineering Mechanics: Dissertations, Theses, and Student Research

Debris fences are commonly used by states, in conjunction with a concrete parapet, to protect railway tracks. Their use limits the intrusion of debris that could damage tracks or clutter rail lines. Due to a lack of previously crash-tested systems, the safety performance of such designs are largely unknown. The Iowa Department of Transportation (DOT) desired that researchers at the Midwest Roadside Safety Facility (MwRSF) design a crashworthy debris fence mounted on top of a concrete parapet to meet the Manual for Assessing Safety Hardware (MASH) TL-3 crash test conditions. Part 1 of this thesis details the literature review and …

Nebraska Specific Slope Design Manual, Chung R. Song, Yong-Rak Kim, Hossein Bahmyrai, Layal Bitar, Soroosh Amelian

Nebraska Department of Transportation: Research Reports

This study introduces proper design and retrofitting techniques to mitigate slope failure in Nebraska based on experimental and analytical research. The geological history, unique soil properties, failure mechanisms and potential new design/retrofitting methods are accounted for in this study. The following are the key findings.

Nebraska is covered by glacial tills, loess/sands, and shales with expansive clay minerals. Loess and shales are often highly overconsolidated due to the high overburden from Laurentide ice sheet which covered North America between 0.1 M to 0.02 M years ago. Overconsolidated expansive shale clays often exhibit time dependent strength reduction, and collapsible loess often …