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Biochemical and Biomolecular Engineering Commons™

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2018

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Articles 1 - 17 of 17

Full-Text Articles in Biochemical and Biomolecular Engineering

Lipid Extraction From Spirulina Sp. And Schizochytrium Sp. Using Supercritical Co2 With Methanol, Shihong Liu, Husam A. Abu Hajar, Guy Riefler, Ben J. Stuart Dec 2018

Lipid Extraction From Spirulina Sp. And Schizochytrium Sp. Using Supercritical Co2 With Methanol, Shihong Liu, Husam A. Abu Hajar, Guy Riefler, Ben J. Stuart

Civil & Environmental Engineering Faculty Publications

Microalgae are one of the most promising feedstocks for biodiesel production due to their high lipid content and easy farming. However, the extraction of lipids from microalgae is energy intensive and costly and involves the use of toxic organic solvents. Compared with organic solvent extraction, supercritical CO2 (SCCO2) has demonstrated advantages through lower toxicity and no solvent-liquid separation. Due to the nonpolar nature of SCCO2, polar organic solvents such as methanol may need to be added as a modifier in order to increase the extraction ability of SCCO2. In this paper, pilot scale lipid …

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Multivariate Analysis For The Quantification Of Transdermal Volatile Organic Compounds In Humans By Proton Exchange Membrane Fuel Cell System, Ahmed Hasnain Jalal Nov 2018

Multivariate Analysis For The Quantification Of Transdermal Volatile Organic Compounds In Humans By Proton Exchange Membrane Fuel Cell System, Ahmed Hasnain Jalal

FIU Electronic Theses and Dissertations

In this research, a proton exchange membrane fuel cell (PEMFC) sensor was investigated for specific detection of volatile organic compounds (VOCs) for point-of-care (POC) diagnosis of the physiological conditions of humans. A PEMFC is an electrochemical transducer that converts chemical energy into electrical energy. A Redox reaction takes place at its electrodes whereas the volatile biomolecules (e.g. ethanol) are oxidized at the anode and ambient oxygen is reduced at the cathode. The compounds which were the focus of this investigation were ethanol (C2H5OH) and isoflurane (C3H2ClF5O), but theoretically, the sensor …

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Uncoupling Fermentative Synthesis Of Molecular Hydrogen From Biomass Formation In Thermotoga Maritima, Raghuveer Singh, Derrick White, Yaşar Demirel, Robert Kelley, Kenneth Noll, Paul H. Blum Aug 2018

Uncoupling Fermentative Synthesis Of Molecular Hydrogen From Biomass Formation In Thermotoga Maritima, Raghuveer Singh, Derrick White, Yaşar Demirel, Robert Kelley, Kenneth Noll, Paul H. Blum

Department of Chemical and Biomolecular Engineering: Faculty Publications

When carbohydrates are fermented by the hyperthermophilic anaerobe Thermotoga maritima, molecular hydrogen (H2) is formed in strict proportion to substrate availability. Excretion of the organic acids acetate and lactate provide an additional sink for removal of excess reductant. However, mechanisms controlling energy management of these metabolic pathways are largely unexplored. To investigate this topic, transient gene inactivation was used to block lactate production as a strategy to produce spontaneous mutant cell lines that overproduced H2 through mutation of unpredicted genetic targets. Single-crossover homologous chromosomal recombination was used to disrupt lactate dehydrogenase (encoded by ldh) with …

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Incorporating Germanium Oxide Into The Glass Phase Of Novel Zinc/Magnesium-Based Gpcs Designed For Bone Void Filling: Evaluating Their Physical And Mechanical Properties, Basel A. Khader, Omar Rodriguez, Mark R. Towler Jul 2018

Incorporating Germanium Oxide Into The Glass Phase Of Novel Zinc/Magnesium-Based Gpcs Designed For Bone Void Filling: Evaluating Their Physical And Mechanical Properties, Basel A. Khader, Omar Rodriguez, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

The structural role of Germanium (Ge), when substituting for Zinc (Zn) up to 8 mol % in the 0.48SiO2-0.12CaO-0.36ZnO-0.04MgO glass series, was investigated with respect to both the glass chemistry and also the properties of glass polyalkenoate cements (GPCs) manufactured from them. The Network connectivity (NC) of the glass was calculated to increase from 1.83 to 2.42 with the addition of GeO2 (0-8 mol %). Differential thermal analysis (DTA) results confirmed an increase in the glass transition temperature (Tg) of the glass series with GeO2 content. X-ray photoelectron spectroscopy (XPS) showed an increase in …

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Software For Peak Finding And Elemental Composition Assignment For Glycosaminoglycan Tandem Mass Spectra, John D. Hogan, Joshua A. Klein, Jiandong Wu, Pradeep Chopra, Geert Jan Boons, Luis Carvalho, Cheng Lin, Joseph Zaia Jul 2018

Software For Peak Finding And Elemental Composition Assignment For Glycosaminoglycan Tandem Mass Spectra, John D. Hogan, Joshua A. Klein, Jiandong Wu, Pradeep Chopra, Geert Jan Boons, Luis Carvalho, Cheng Lin, Joseph Zaia

Chemical and Biochemical Engineering Faculty Research & Creative Works

Glycosaminoglycans (GAGs) Covalently Linked to Proteoglycans (PGs) Are Characterized by Repeating Disaccharide Units and Variable Sulfation Patterns Along the Chain. GAG Length and Sulfation Patterns Impact Disease Etiology, Cellular Signaling, and Structural Support for Cells. We and Others Have Demonstrated the Usefulness of Tandem Mass Spectrometry (MS 2 ) for Assigning the Structures of GAG Saccharides; However, Manual Interpretation of Tandem Mass Spectra is Time-Consuming, So Computational Methods Must Be Employed. in the Proteomics Domain, the Identification of Monoisotopic Peaks and Charge States Relies on Algorithms that Use Averagine, or the Average Building Block of the Compound Class Being Analyzed. …

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Distribution And Localization Of Novel Iodine Nanoparticles In The Human Glioma 1242 Growing In The Brains Of Mice, Benjamin Billings Jun 2018

Distribution And Localization Of Novel Iodine Nanoparticles In The Human Glioma 1242 Growing In The Brains Of Mice, Benjamin Billings

Honors Scholar Theses

Observing and designing the in vivo distribution and localization of therapeutic nanoparticles is an essential aspect of developing and understanding novel nanoparticle- based medical treatments. This study investigates novel PEGylated Iodine-based nanoparticles (INPs), an alternate composition to the more widely researched gold nanoparticles (AuNPs), which may help avoid adverse effects associated with AuNPs, such as potential toxicity and skin discoloration, when used in similar applications. Determining the localization of the novel INPs within murine brains containing human glioma U-1242MG cells is critical in assisting the development of radiation dose enhancement therapy for this aggressive cancer. Radiation dose enhancement utilizes the …

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Negative Electron Transfer Dissociation Sequencing Of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides, Jiandong Wu, Juan Wei, John D. Hogan, Pradeep Chopra, Apoorva Joshi, Weigang Lu, Joshua Klein, Geert Jan Boons, Cheng Lin, Joseph Zaia Jun 2018

Negative Electron Transfer Dissociation Sequencing Of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides, Jiandong Wu, Juan Wei, John D. Hogan, Pradeep Chopra, Apoorva Joshi, Weigang Lu, Joshua Klein, Geert Jan Boons, Cheng Lin, Joseph Zaia

Chemical and Biochemical Engineering Faculty Research & Creative Works

Among Dissociation Methods, Negative Electron Transfer Dissociation (NETD) Has Been Proven the Most Useful for Glycosaminoglycan (GAG) Sequencing Because It Produces Informative Fragmentation, a Low Degree of Sulfate Losses, High Sensitivity, and Translatability to Multiple Instrument Types. the Challenge, However, is to Distinguish Positional Sulfation. in Particular, NETD Has Been Reported to Fail to Differentiate 4-O- Versus 6-O-Sulfation in Chondroitin Sulfate Decasaccharide. This Raised the Concern of Whether NETD is Able to Differentiate the Rare 3-O-Sulfation from Predominant 6-O-Sulfation in Heparan Sulfate (HS) Oligosaccharides. Here, We Report that NETD Generates Highly Informative Spectra that Differentiate Sites of O-Sulfation on Glucosamine …

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Learning In Bio-Molecular Computing Systems, Lauren Braun May 2018

Learning In Bio-Molecular Computing Systems, Lauren Braun

Undergraduate Research & Mentoring Program

Many potential applications of biochemical computers involve the detection of highly adaptable and dynamic chemical systems, such as emerging pathogens. Current technology is expensive to develop and unique to each application, thus causing limitations in accessibility. In order to make this type of computing a realistic solution to problems in the medical field, a biochemical computer would need to be adaptable to work in a variety of applications. Banda et al. (2014) previously proposed a first dynamic biochemical system that was capable of autonomous learning. For this project we studied a framework similar to Banda’s but in two separate pieces, …

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Predicting The Dynamic Binding Capacities For Adsorbents Using Bsa As A Model Protein, Gaoshan Li May 2018

Predicting The Dynamic Binding Capacities For Adsorbents Using Bsa As A Model Protein, Gaoshan Li

Rose-Hulman Undergraduate Research Publications

Membrane adsorbers are one alternative to traditional bead-based chromatography that receive attention in the bioseparation process because of their ability to process material with lower residence times. However some properties of membranes make membrane adsorbers unrealistic for some applications. For example, some membrane adsorbers exhibit lower binding capacities compared with the traditional bead-based chromatography counterparts. The dynamic binding capacity (DBC) in this study is defined as the amount of protein bound in the column when the outlet reaches a certain concentration, which is 10% [2], and the equilibrium binding capacity (EBC) is the binding capacity under the equilibrium conditions, when …

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Development Of A Novel Bioactive Glass Suitable For Osteosarcoma-Related Bone Grafts, Alireza Rahimnejad Yazdi, Lawrence Torkan, Stephen D. Waldman, Mark R. Towler Apr 2018

Development Of A Novel Bioactive Glass Suitable For Osteosarcoma-Related Bone Grafts, Alireza Rahimnejad Yazdi, Lawrence Torkan, Stephen D. Waldman, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

In this study, zinc borate-based glasses with increasing gallium content (0, 2.5, 5, 10, and 15 wt % Ga) were synthesized and their effect on the viability and proliferation of preosteoblasts and osteosarcoma cancer cells were investigated. Methyl thiazolyl tetrazolium (MTT) cell viability assays using glass degradation extracts revealed that the extracts from glasses with lower Ga contents could enhance the viability of preosteoblasts, while extracts from the glass composition with 15 wt % Ga caused statistically significant reduction of their viability. MTT cell viability assays using the extracts and osteosarcoma cells showed that only extracts from the glass composition …

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The Effect Of Mg²⁺ Incorporation Into The Glass Phase Of Zinc-Based Glass Polyalkenoate Cements, Basel A. Khader, Omar Rodriguez, Mark R. Towler Mar 2018

The Effect Of Mg²⁺ Incorporation Into The Glass Phase Of Zinc-Based Glass Polyalkenoate Cements, Basel A. Khader, Omar Rodriguez, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

The suitability of glass polyalkenoate cements (GPCs) as injectable adhesives in orthopedics have been compromised by the presence of aluminum (Al), a component in the glass phase of all commercial GPCs. There has been considerable work on the development of Al-free GPCs which can be formulated based on calcium (Ca) zinc (Zn) silicate (Si) glasses. These materials, in terms of biocompatibility and mechanical properties, have potential for orthopedics. However, many of these experimental Al-free GPCs have setting times shorter than 60 s, restricting clinical applications. Here, the authors incorporate Magnesium (Mg) into the glass phase of Al-free GPCs in an …

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Injectable Glass Polyalkenoate Cements: Evaluation Of Their Rheological And Mechanical Properties With And Without The Incorporation Of Lidocaine Hydrochloride, P. Niranjan, A. Alhalawani, S. Phull, I. Beniluz, B. Krishnan, P. Zalzal, Mark R. Towler Mar 2018

Injectable Glass Polyalkenoate Cements: Evaluation Of Their Rheological And Mechanical Properties With And Without The Incorporation Of Lidocaine Hydrochloride, P. Niranjan, A. Alhalawani, S. Phull, I. Beniluz, B. Krishnan, P. Zalzal, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Lidocaine hydrochloride is used as an anesthetic in many clinical applications. This short communication investigates the effect of complete substitution of lidocaine hydrochloride for deionized (DI) water on the physico-chemical properties of two novel glass polyalkenoate cements. Substituting DI water with lidocaine hydrochloride resulted in cements with shorter working times but comparable setting times and mechanical properties. Fourier transform infrared spectroscopy confirmed that the setting reaction in cements containing DI water and lidocaine hydrochloride was completed within 24 h, post cement preparation and maturation. Further, it was explained that lidocaine hydrochloride binds to poly(acrylic) acid (PAA) due to electrostatic forces …

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Raman Spectroscopy Predicts The Link Between Claw Keratin And Bone Collagen Structure In A Rodent Model Of Oestrogen Deficiency, M. Clare Caraher, Antonia Sophocleous, J. Renwick Beattie, Olive O'Driscoll, Niamh M. Cummins, Orlaith Brennan, Fergal J. O'Brien, Stuart H. Ralston, Steven E.J. Bell, Mark R. Towler, Aymen I. Idris Feb 2018

Raman Spectroscopy Predicts The Link Between Claw Keratin And Bone Collagen Structure In A Rodent Model Of Oestrogen Deficiency, M. Clare Caraher, Antonia Sophocleous, J. Renwick Beattie, Olive O'Driscoll, Niamh M. Cummins, Orlaith Brennan, Fergal J. O'Brien, Stuart H. Ralston, Steven E.J. Bell, Mark R. Towler, Aymen I. Idris

Chemical and Biochemical Engineering Faculty Research & Creative Works

Osteoporosis is a common disease characterized by reduced bone mass and an increased risk of fragility fractures. Low bone mineral density is known to significantly increase the risk of osteoporotic fractures; however, the majority of non-traumatic fractures occur in individuals with a bone mineral density too high to be classified as osteoporotic. Therefore, there is an urgent need to investigate aspects of bone health, other than bone mass, that can predict the risk of fracture. Here, we successfully predicted association between bone collagen and nail keratin in relation to bone loss due to oestrogen deficiency using Raman spectroscopy. Raman signal …

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Catalytic Fast Pyrolysis Of Kraft Lignin Over Hierarchical Hzsm-5 And Hβ Zeolites, Yadong Bi, Xiaojuan Lei, Guihua Xu, Hui Chen, Jianli Hu Jan 2018

Catalytic Fast Pyrolysis Of Kraft Lignin Over Hierarchical Hzsm-5 And Hβ Zeolites, Yadong Bi, Xiaojuan Lei, Guihua Xu, Hui Chen, Jianli Hu

Faculty & Staff Scholarship

The hierarchical HZSM-5 and Hβ zeolites were prepared by alkaline post-treatment methods adopting Na2CO3, TMAOH/NaOH mixture, and NaOH as desilication sources, respectively. More mesopores are produced over two kinds of zeolites, while the micropores portion is well preserved. The mesopores formed in hierarchical Hβ zeolites were directly related to the basicity of the alkaline solution, indicating that Hβ zeolite is more sensitive to the alkaline post-treatment. The hierarchical HZSM-5 and Hβ zeolites are more active than the parent one for catalytic fast pyrolysis (CFP) of Kraft lignin. Hierarchical zeolites retained the function of acid catalysis, while additionally creating larger mesopores …

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Sustainable Waste-To-Energy Technologies: Bioelectrochemical Systems, Rami Ziara, Bruce Dvorak, Jeyamkondan Subbiah Jan 2018

Sustainable Waste-To-Energy Technologies: Bioelectrochemical Systems, Rami Ziara, Bruce Dvorak, Jeyamkondan Subbiah

Department of Civil and Environmental Engineering: Faculty Publications

The food industry produces a large amount of waste and wastewater, of which most of the constituents are carbohydrates, proteins, lipids, and organic fibers. Therefore food wastes are highly biodegradable and energy rich. Bioelectrochemical systems (BESs) are systems that use microorganisms to biochemically catalyze complex substrates into useful energy products, in which the catalytic reactions take place on electrodes. Microbial fuel cells (MFCs) are a type of bioelectrochemical systems that oxidize substrates and generate electric current. Microbial electrolysis cells (MECs) are another type of bioelectrochemical systems that use an external power source to catalyze the substrate into by-products such as …

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The Impact Of Gallium Content On Degradation, Bioactivity, And Antibacterial Potency Of Zinc Borate Bioactive Glass, Alireza Rahimnejad Yazdi, Lawrence Torkan, Wendy Stone, Mark R. Towler Jan 2018

The Impact Of Gallium Content On Degradation, Bioactivity, And Antibacterial Potency Of Zinc Borate Bioactive Glass, Alireza Rahimnejad Yazdi, Lawrence Torkan, Wendy Stone, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Zinc borate glasses with increasing gallium content (0, 2.5, 5, 10, and 15 Wt % Ga) were synthesized and their degradation, bioactivity in simulated body fluid (SBF), and antibacterial properties were investigated. ICP measurements showed that increased gallium content in the glass resulted in increased gallium ion release and decreased release of other ions. Degradability declined with the addition of gallium, indicating the formation of more symmetric BO3 units with three bridging oxygens and asymmetric BO3 units with two bridging oxygens in the glass network as the gallium content in the series increased. The formation of amorphous Ca-P …

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A Preliminary Evaluation Of The Ability Of Keratotic Tissue To Act As A Prognostic Indicator Of Hip Fracture Risk, J. Renwick Beattie, Diane Feskanich, M. Clare Caraher, Mark R. Towler Jan 2018

A Preliminary Evaluation Of The Ability Of Keratotic Tissue To Act As A Prognostic Indicator Of Hip Fracture Risk, J. Renwick Beattie, Diane Feskanich, M. Clare Caraher, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Studies have shown that Raman spectroscopic analysis of fingernail clippings can help differentiate between post-menopausal women who have and who have not suffered a fracture. However, all studies to date have been retrospective in nature, comparing the proteins in nails sourced from women, post-fracture. The objective of this study was to investigate the potential of a prospective test for hip fracture based on spectroscopic analysis of nail tissue. Archived toenail samples from post-menopausal women aged 50 to 63 years in the Nurses' Health Study were obtained and analysed by Raman spectroscopy. Nails were matched case-controls sourced from 161 women; 82 …

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