Biochemical and Biomolecular Engineering Commons^™

Effective Antisense Design Using An Ensemble Of Energetically Sub-Optimal Secondary Mrna Structures, Andrea M. Divenere

University Scholar Projects

There is a current deficit of effective therapies against bacterial infection. Many strategies seek using small molecules to target the infectious pathogen. One approach involves direct manipulation of the pathogen at the RNA level. Messenger RNA (mRNA) is a genetic transcript that encodes the fundamental instruction for protein production. Inhibiting mRNA translation effectively prevents protein synthesis.

The therapeutic agent must physically access mRNA to effectively block its message from being read. A technique has arisen where a complementary nucleic acid binding strand, called antisense, is generated to impede protein synthesis. An issue in creating effective antisense is finding mRNA target …