Bioresource and Agricultural Engineering Commons^™

System And Method For Analyzing Material Properties Using Hyperspectral Imaging, Jeyamkondan Subbiah, Chris Richard Calkins, Ashok Samal

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Systems and methods are provided for analyzing material properties of an object using hyperspectral imaging. An exemplary method includes obtaining a hyperspectral image of an object; analyzing the hyperspectral image according to an algorithm; and correlating data obtained from the analysis with material properties of the object.

Manure Testing: What To Request?, Charles A. Shapiro, Charles S. Wortmann

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Manure testing is necessary to make optimum use of manure while protecting water resources. This publication is a guide to providing information on a Manure Sample Sub­mission Form for reliable interpretation of results.

The tests most frequently needed to optimize nutrient management are total and ammonium nitrogen (NH₄-N), phosphorus (P₂O₅), potassium (K₂O), pH, soluble salts, sodium, and dry matter content.

Nitrogen. Manure contains both organic and inorganic forms of nitrogen. Ammonium-N is the primary inorganic form in manure and is readily available to crops. Nitrate-N concentration is usually too small to …

Evaluation Of Irrigation Strategies With The Dssat Cropping System Model, Derek M. Heeren, Hal D. Warner, Todd P. Trooien

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Water is becoming an increasingly valuable commodity with shortages and water rationing more commonplace. Since irrigation is the largest consumptive use of water in South Dakota, accounting for over 70% of the water withdrawals, irrigation water management is critical to make the best use of the water available. This project uses the CERES-Maize cropping system model (available in DSSAT v4) to study the impact of various irrigation management strategies on corn production. SDSU management software developed by Oswald (2006) is used to simulate a center pivot for specific locations and years. Weather data from several sites in the Great Plains …

Laying The Groundwork For Odor Control And Setback Estimation In Nebraska, Rick R. Stowell

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The goal of this field research study was to validate use of the Odor Footprint Tool (OFT) with livestock building sources in rural communities. The primary objective was to evaluate the accuracy of predictions of annoyance potential (as projected by odor concentration output data from AERMOD^® - the OFT's underlying dispersion model) when compared to measures of annoyance potential made in the field. Odor assessors were trained to monitor odors around a 4,800-head finishing site in eastern Nebraska. During the summer of 2005, mobile odor assessors monitored odor levels at downwind locations. During the spring and summer of 2006, …

Discrimination Of Bacteria And Bacteriophages By Raman Spectroscopy And Surface-Enhanced Raman Spectroscopy, Lindsay J. Goeller, Mark R. Riley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Detection of pathogenic organisms in the environment presents several challenges due to the high cost and long times typically required for identification and quantification. Polymerase chain reaction (PCR) based methods are often hindered by the presence of polymerase inhibiting compounds and so direct methods of quantification that do not require enrichment or amplification are being sought. This work presents an analysis of pathogen detection using Raman spectroscopy to identify and quantify microorganisms without drying. Confocal Raman measurements of the bacterium Escherichia coli and of two bacteriophages, MS2 and PRD1, were analyzed for characteristic peaks and to estimate detection limits using …

Introducing Journal Of Biological Engineering, Mark R. Riley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Welcome to Journal of Biological Engineering (JBE), the flagship publication of the Institute of Biological Engineering. Biological Engineering is a new and unique discipline that encompasses a wide range of engineering theory and practice connected to and derived from biology. This emerging science-based engineering discipline and related applications are experiencing rapid growth. Prior to publication of JBE there is no refereed publication that encompasses the breadth and depth of biological engineering as a science- based discipline, rather than a collection of applications. Our goal in publishing JBE is to provide a forum for topics that address the foundational …

Biocompatibility Of Te–As–Se Glass Fibers For Cell-Based Bio-Optic Infrared Sensors, Allison A. Wilhelm, Pierre Lucas, Diana L. Derosa, Mark R. Riley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The chemical stability and toxicity of Te–As–Se (TAS) infrared fibers are investigated. These fibers are used for biosensing applications that involve direct contact with live cultivated human cells. It is shown that TAS fibers exhibit a small oxidation layer after extended exposure to air. This layer is highly soluble in water and easily removed. However, the TAS glass itself is stable in water over several days. While oxidized fibers release arsenate ions, which result in toxic effects to the cells, fresh or washed fibers show no toxic effects. A good correlation is shown between surface etching and the disappearance of …

Subsurface Characterization Using Textural Features Extracted From Gpr Data, R. S. Freeland, Lameck O. Odhiambo

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Subsurface conditions can be non-intrusively mapped by observing and grouping patterns of similarity within ground-penetrating radar (GPR) profiles. We have observed that the intricate and often visually indiscernible textural variability found within a complex GPR image possesses important parameters that help delineate regions of similar subsurface characteristics. In this study, we therefore examined the feasibility of using textural features extracted from GPR data to automate subsurface characterization. The textural features were matched to a “fingerprint” database of previous subsurface classifications of GPR textural features and the corresponding physical probings of subsurface conditions. Four textural features (energy, contrast, entropy, and homogeneity) …

Analysis Of An Ion‐Selective Electrode Based Methodology For Integrated On‐The‐Go Mapping Of Soil Ph, Potassium, And Nitrate Contents, B. Sethuramasamyraja, V. I. Adamchuk, D. B. Marx, A. Dobermann, G. E. Meyer, D. D. Jones

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Knowledge of the spatial variation of soil attributes is critical for precision agriculture. On‐the‐go soil sensors have been able to provide relatively high mapping density while assessing this variation. A new ion‐selective electrode (ISE) based approach was developed and tested for simultaneous mapping of soil pH, residual nitrate (NO3 -), and soluble potassium (K+) contents. In this article, results of laboratory experiments investigating the effects of key measurement factors on ISE performance are presented. In addition to four different soils, these factors included: soil/water ratio (SWR), quality of water used for electrode rinsing (QWR) and for …

Spatiotemporal Variations In Growing Season Exchanges Of Co2, H2o, And Sensible Heat In Agricultural Fields Of The Southern Great Plains, Marc L. Fischer, Dave P. Billesbach, Joseph A. Berry, William J. Riley, Margaret S. Torn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Climate, vegetation cover, and management create finescale heterogeneity in unirrigated agricultural regions, with important but not well quantified consequences for spatial and temporal variations in surface CO2, water, and heat fluxes. Eddy covariance fluxes were measured in seven agricultural fields—comprising winter wheat, pasture, and sorghum—in the U.S. Southern Great Plains (SGP) during the 2001–03 growing seasons. Land cover was the dominant source of variation in surface fluxes, with 50%–100% differences between fields planted in winter–spring versus fields planted in summer. Interannual variation was driven mainly by precipitation, which varied more than twofold between years. Peak aboveground biomass and growing season …

Risk Of Colon Cancer In Hereditary Non-Polyposis Colorectal Cancer Patients As Predicted By Fuzzy Modeling: Influence Of Smoking, Rhonda M. Brand, David D. Jones, Henry T. Lynch, Randall E. Brand, Patrice Watson, Ramesh Ashwathnayaran, Hemant K. Roy

Department of Agricultural and Biological Systems Engineering: Faculty Publications

AIM: To investigate whether a fuzzy logic model could predict colorectal cancer (CRC) risk engendered by smoking in hereditary non-polyposis colorectal cancer (HNPCC) patients.

METHODS: Three hundred and forty HNPCC mismatch repair (MMR) mutation carriers from the Creighton University Hereditary Cancer Institute Registry were selected for modeling. Age-dependent curves were generated to elucidate the joint effects between gene mutation (hMLH1 or hMSH2), gender, and smoking status on the probability of developing CRC.

RESULTS: Smoking significantly increased CRC risk in male hMSH2 mutation carriers (P < 0.05). hMLH1 mutations augmented CRC risk relative to hMSH2 mutation carriers for males (P < 0.05). Males had a significantly higher risk of CRC than females for hMLH1 non smokers (P < 0.05), hMLH1 smokers (P < 0.1) and hMSH2 smokers (P < 0.1). Smoking promoted CRC in a dose-dependent manner in hMSH2 in males (P < 0.05). Females with hMSH2 mutations and both sexes with the hMLH1 groups only demonstrated a smoking effect after an extensive smoking history (P < 0.05).

CONCLUSION: CRC promotion by smoking in HNPCC patients is dependent on gene mutation, gender and age. …

Trees And Ice Storms: The Development Of Ice Storm–Resistant Urban Tree Populations (Second Edition), Richard J. Hauer, Jeffrey O. Dawson, Les P. Werner

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Severe ice storms occur every year in the United States and Canada, particularly in the midwestern and eastern regions of the United States. Along with fires and wind, ice storms are a frequent and major natural disturbance factor in eastern deciduous forests. Likewise ice storms are responsible for deaths and injuries of people and cause dramatic damage and tree loss to urban forests. Ice storms annually result in millions of dollars in loss, and potentially billions of dollars in losses for extreme and widespread ice storms. Damage to electric distribution systems, blocked roadways, and property damage from fallen trees and …

Nonintrusive Mapping Of Near-Surface Preferential Flow, R. S. Freeland, Lameck O. Odhiambo, J. S. Tyner, J. T. Ammons, W. C. Wright

Department of Agricultural and Biological Systems Engineering: Faculty Publications

A unique survey protocol has been developed that maps near-subsurface preferential flow using integrated ground-penetrating radar (GPR) and a differential geographical positioning system (DGPS). The survey protocol consists of a mobile GPR system that spirals outward along a prescribed course, continuously gathering subsurface data for an extended period. Metered water is applied to a centrally located water-ponding ring, after first capturing the initial dry-state pattern signatures. The water radiates outward beneath the surface as it follows preferential flow pathways, which the GPR instrumentation spiraling above highlights. After data are collected, pre- and post-water time-elapsed images profiles are segmented by pattern …

Mole Drainage For Increased Productivity In The South West Irrigation Area, D L. Bennett, Richard George, Bill Russell

Bulletins 4000 -

Heavy soils, with low rates of soil-water movement, such as those found in the South-West Irrigation Area (SWIA), require closely spaced (2-6 m apart) subsoil drainage systems to provide sufficient water movement to control the effects of salt-waterlogging on pastures. Such close spacing using traditional buried pipe or tile drainage systems is impractical. As a result, mole drainage systems, used in other parts of the world for over 50 years, have gained popularity in the SWIA in recent years.

This Bulletin Farmnote reports the current ‘best-bet’ mole draining technique for SWIA conditions gathered from observations over a number of years …

Evaluation Of Toxic Agent Effects On Lung Cells By Fiber Evanescent Wave Spectroscopy, Pierre Lucas, David Lee Coq, Christophe Juncker, Jayne Collier, Dianne E. Boesewetter, Catherine Boussard-Pledel, Bruno Bureau, Mark R. Riley

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Biochemical changes in living cells are detected using a fiber probe system composed of a single chalcogenide fiber acting as both the sensor and transmission line for infrared optical signals. The signal is collected via evanescent wave absorption along the tapered sensing zone of the fiber. We spectroscopically monitored the effects of the surfactant Triton X-lOO, which serves as a toxic agent simulant on a transformed human lung carcinoma type II epithelial cell line (A549). We observe spectral changes between 2800-3000 cm-1 in four absorptions bands, which are assigned to hydrocarbon vibrations of methylene and methyl groups in membrane lipids. …

Evaluation Of Methods For Estimating Daily Reference Crop Evapotranspiration At A Site In The Humid Southeast United States, R. E. Yoder, Lameck O. Odhiambo, Wesley C. Wright

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Estimated daily reference crop evapotranspiration (ET_o) is normally used to determine the water requirement of crops using the crop factor method. Many ET_o estimation methods have been developed for different types of climatic data, and the accuracy of these methods varies with climatic conditions. In this study, pair−wise comparisons were made between daily ET_o estimated from eight different ET_o equations and ET_o measured by lysimeter to provide information helpful in selecting an appropriate ET_o equation for the Cumberland Plateau located in the humid Southeast United States. Based on the standard error of the …

Remote Estimation Of Canopy Chlorophyll Content In Crops, Anatoly A. Gitelson, Andrés Viña, Veronica Ciganda, Donald Rundquist, Timothy J. Arkebauer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Accurate estimation of spatially distributed chlorophyll content (Chl) in crops is of great importance for regional and global studies of carbon balance and responses to fertilizer (e.g., nitrogen) application. In this paper a recently developed conceptual model was applied for remotely estimating Chl in maize and soybean canopies. We tuned the spectral regions to be included in the model, according to the optical characteristics of the crops studied, and showed that the developed technique allowed accurate estimation of total Chl in both crops, explaining more than 92% of Chl variation. This new technique shows great potential for remotely tracking the …

Modeling Sediment Trapping In A Vegetative Filter Accounting For Converging Overland Flow, M. J. Helmers, D. E. Eisenhauer, Thomas G. Franti, Michael G. Dosskey

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Vegetative filters (VF) are used to remove sediment and other pollutants from overland flow. When modeling the hydrology of VF, it is often assumed that overland flow is planar, but our research indicates that it can be two-dimensional with converging and diverging pathways. Our hypothesis is that flow convergence will negatively influence the sediment trapping capability of VF. The objectives were to develop a two-dimensional modeling approach for estimating sediment trapping in VF and to investigate the impact of converging overland flow on sediment trapping by VF. In this study, the performance of a VF that has field-scale flow path …

Genetic Algorithm-Based Model For Determination Of Efficient Management Strategies For Irrigation Canal Networks, Talaat Taher El Gamel

Civil & Environmental Engineering Theses & Dissertations

An optimization model for the determination of efficient management strategies for an irrigation canal network is developed. The objective is to minimize the total water consumed while satisfying various system constraints. An unsteady flow model is used to simulate the flow in the network. A genetic algorithm- (GA-) based framework is used to solve the model. The suitable GA parameters that should be used within the model, as well as the performance of various constraint-handling techniques, are studied. Uncertainties in crop pattern and water consumption rates are incorporated into the search procedure to identify more reliable solutions. A graphical interface …

A Nebraska Odor Footprint Tool For Planning Pork Facilities, Richard Koelsch

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Pork producers and rural communities are struggling to balance air quality issues (primarily odors) with the presence and growth of the industry. Currently the type of pork facility, odor control measures, prevailing wind direction, atmospheric conditions, and a community's tolerance to some degree of odor are largely ignored in the planning process because scientific tools that incorporate this information are lacking. Without such tools, decisions on setback distances and acceptable type and size of facilities are influenced by a range of arguments, often emotional in nature. In addition, pork producers lack tools to assist in evaluating impact on a rural …

Zone Heating For Wean-To-Finish Facilities: A Performance Comparison, Rick R. Stowell

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Farm research trials were conducted in 2003 and 2004 to assess the effects of the type of zone heater and floor mat used in a wean-to-finish building on the thermal environment created for newly weaned pigs and resulting pig performance. Modulated LP gas-fired brooder heaters were compared to electric heat lamps, and floor mats made from farm-cut wood sheathing (3/8” oriented-strand board, OSB) were compared to commercial [unheated] rubber mats in a replicated 2x2 factorial experiment. No consistent differences in air temperature near the heating zone were found between either of the treatments, with treatment means within 1^oF …

Investigation Of A Fuzzy-Neural Network Application In Classification Of Soils Using Ground-Penetrating Radar Imagery, Lameck O. Odhiambo, R. S. Freeland, R. E. Yoder, J. W. Hines

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Errors associated with visual inspection and interpretations of radargrams often inhibit the intensive surveying

of widespread areas using ground-penetrating radar (GPR). To automate the interpretive process, this article presents an

application of a fuzzy-neural network (F-NN) classifier for unsupervised clustering and classification of soil profiles using

GPR imagery. The classifier clusters and classifies soil profile strips along a traverse based on common pattern similarities

that can relate to physical features of the soil (e.g., number of horizons; depth, texture, and structure of the horizons; and

relative arrangement of the horizons, etc.). This article illustrates this classification procedure by its application …

Recommended Strategies For Odor Control In Confinement Beef Cattle Operations, Kent Tjardes, Alvaro Garcia, Hans Stein, Charles Ullery, Stephen Pohl, Christopher Schmit

SDSU Extension Special Series

Odors coming off a beef feeding operation are generated from three different sources: the feedlot facility, waste storage, and the land where the manure is applied. In some operations, the feedlot facility may also serve as the primary waste storage area. To reduce the total amount of odor generated from a beef feeding operation, odor generation and emission by each of these three sources needs to be reduced.

A Portable Eddy Covariance System For The Measurement Of Ecosystem–Atmosphere Exchange Of Co2, Water Vapor, And Energy, Dave P. Billesbach, M.L. Fischer, Margaret S. Torn, J.A. Berry

Department of Agricultural and Biological Systems Engineering: Faculty Publications

To facilitate the study of flux heterogeneity within a region, the authors have designed and field-tested a portable eddy covariance system to measure exchange of CO2, water vapor, and energy between the land surface and the atmosphere. The combination of instrumentation used in this system allows high precision flux measurements without requiring on-site infrastructure such as prepositioned towers or line power. In addition, the system contains sensors to measure a suit of soil, climatic, and energy-related parameters that are needed to quality control the fluxes and to characterize the flux footprint. The physical design and instrument packaging used in the …

Ft-Nir Spectroscopic Analysis Of Nitrogen In Cotton Leaves, Mark R. Riley, Loreto C. Canaves

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Near-infrared spectroscopy was evaluated as a means to quantify the nitrogen content- in fresh cotton leaves (Gossypium hirsutum L. var. Delta Pine 90) subjected to a factorial design experiment of varying nitrogen and water applications. Absorbance spectra were collected in the 10000-4000 cm^-1 (1000-2500 nm) region from fresh cotton leaves over a two month portion of the growing season. Total nitrogen content was quantified by a wet chemistry Kjeldahl method for validation purposes. Partial least-squares regression analysis, using an automated grid search method, selected the spectral region 6041 to 5651 cm^-1 (1650-1770 nm) for analysis based on having …

Estimation Of Reference Crop Evapotranspiration Using Fuzzy State Models, Lameck O. Odhiambo, R. E. Yoder, D. C. Yoder

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Daily evapotranspiration (ET) rates are needed for irrigation scheduling. Owing to the difficulty of obtaining accurate field measurements, ET rates are commonly estimated from weather parameters. A few empirical or semi–empirical methods have been developed for assessing daily reference crop ET, which is converted to actual crop ET using crop coefficients. The FAO Penman–Monteith method, which is now accepted as the standard method for the computation of daily reference ET, is sophisticated. It requires several input parameters, some of which have no actual measurements but are estimated from measured weather parameters. In this study, we examined the suitability of fuzzy …

Optimization Of Fuzzy Evapotranspiration Model Through Neural Training With Input–Output Examples, Lameck O. Odhiambo, R. E. Yoder, D. C. Yoder, J. W. Hines

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In a previous study, we demonstrated that fuzzy evapotranspiration (ET) models can achieve accurate estimation of daily ET comparable to the FAO Penman–Monteith equation, and showed the advantages of the fuzzy approach over other methods. The estimation accuracy of the fuzzy models, however, depended on the shape of the membership functions and the control rules built by trial–and–error methods. This paper shows how the trial and error drawback is eliminated with the application of a fuzzy–neural system, which combines the advantages of fuzzy logic (FL) and artificial neural networks (ANN). The strategy consisted of fusing the FL and ANN on …

Determination Of Semivariogram Models To Krige Hourly And Daily Solar Irradiance In Western Nebraska*, G.G. Merino, D. Jones, David Stooksbury, Kenneth Hubbard

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In this paper, linear and spherical semivariogram models were determined for use in kriging hourly and daily solar irradiation for every season of the year. The data used to generate the models were from 18 weather stations in western Nebraska. The models generated were tested using cross validation. The performance of the spherical and linear semivariogram models were compared with each other and also with the semivariogram models based on the best fit to the sample semivariogram of a particular day or hour. There were no significant differences in the performance of the three models. This result and the comparable …

Effect Of Sample Complexity On Quantification Of Analytes In Aqueous Samples By Near-Infrared Spectroscopy, Mark R. Riley, Mark A. Arnold, David W. Murhammer

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This study was undertaken to quantitate the impact of increasing sample complexity on near-infrared spectroscopic (NIRS) measurements of small molecules in aqueous solutions with varying numbers of components. Samples with 2, 6, or 10 varying components were investigated. Within the 10-component samples, three analytes were quantified with errors below 6% and seven of the analytes were quantified with errors below 10%. An increase in the number of varying components can substantially increase the error associated with measurement. A comparison of measurement errors across sample sets, as gauged by the standard error of prediction (SEP), reveals that an increase in the …

Evaluation Of Soil Conservation Measures: A Case Study In Mbinga District, Ruvuma Region, Tanzania, S. Y. Thadei

Tanzania Journal of Engineering and Technology (TJET)

A study on soil conservation measures was conducted in two villages, Tukuzi and Mahenge, in Mbinga District, Ruvuma Region, Tanzania. The results showed that the ngoro farming system was effective in controlling soil erosion by water on both steep and gentle slopes. Sediments collected from ngoro had high concentrations of plant nutrients such as available phosphorus (P), total nitrogen (N), organic carbon (OC) and exchangeable bases. This was probably due to nutrients released from decomposed grass bundles buried in the soil. In preventing soil erosion, ngoro and bench terraces were equally effective, while contour ditches were as effective as ridges …