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Full-Text Articles in Biological Engineering

Study Of Surface And Groundwater Quality And Quantity At Watershed Scale In Mississippi, Dipesh Nepal Dec 2023

Study Of Surface And Groundwater Quality And Quantity At Watershed Scale In Mississippi, Dipesh Nepal

Theses and Dissertations

Hydrology and water quality are affected by land use and climate changes. Mississippi’s diverse agro–ecosystem comprises of a range of land use land cover (LULC) including agriculture, forest, wetlands, urban, and grasslands. The objectives of this study were to investigate the impacts of various factors such as Best Management Practices (BMPs), wetlands, LULC, and climate changes on water quality and quantity. The hydrologic and water quality responses to dynamic LULC input in Soil and Water Assessment Tool (SWAT) were evaluated. Results showed that agricultural and forest expansion were major drivers of hydrologic and water quality changes in Big Sunflower River …


Novel 3d Bench Top Model For Vascular Calcification Research, Ursla-Marie K. Offiah Aug 2022

Novel 3d Bench Top Model For Vascular Calcification Research, Ursla-Marie K. Offiah

Theses and Dissertations

Cardiovascular disease is the leading cause of non-communicable disease in the whole world killing 17 million people in 2012. Among the many vascular diseases is vascular calcification (VC) which is the mineral build up in the walls of blood vessels. Medial calcification is the plaque buildup in the medial layer of the blood vesicle that is characterized by arterial stiffness and high blood pressure. Current calcification research involves two dimensional (2D) lab methods such as flat petri dishes to investigate the mechanism that causes and inhibits vascular calcification. Research has shown that the use of three-dimensional (3D) models can be …


Design Of Plastic Contaminant Eliminator In Seed Cotton, Joshua H. Tandio Dec 2021

Design Of Plastic Contaminant Eliminator In Seed Cotton, Joshua H. Tandio

Theses and Dissertations

Plastic contamination in cotton is a problem in cotton industry and researchers have worked on this problem with different approaches. This thesis documents the design of mechanical and electronic real-time systems for detecting and removing plastic contaminants. The mechanical system was designed to expose plastic embedded inside the seed cotton to the sensor and to separate plastic contaminated cotton from the process stream. The detection system consisted of an embedded computer interfaced with a USB camera and Neural Network (NN) software running in it. Two NN models were tested, a transfer learning model and a built-from-scratch original model. The original …


Hydrology And Water Quality Analysis In The Big Black River Watershed, Mississippi, Moniba Shabbir Dec 2021

Hydrology And Water Quality Analysis In The Big Black River Watershed, Mississippi, Moniba Shabbir

Theses and Dissertations

Evaluating hydrology and water quality for the Big Black River Watershed in Mississippi was accomplished by using the Better Assessment Science Integrating Point and Nonpoint Source (BASINS 4.5), Loading Simulation Program in C++ (LSPC), and Water Quality Analysis Simulation Program (WASP) models. The watershed model calibration was originally accomplished by using historical data collected from U.S. Geological Survey (USGS). The watershed model was calibrated using data from 2000 through 2018 in order to quantify stream flow and point source discharges under a variety of hydrologic conditions. The model predicted response of hydrology was consistent with the observed data range. The …


A Survey Of Stainless Steel In Medical And Surgical Application, Noah Slack, Clint Balch Dec 2021

A Survey Of Stainless Steel In Medical And Surgical Application, Noah Slack, Clint Balch

ME 4133/6133 Mechanical Metallurgy

Stainless steels can be separated into four families based on the microstructure of the material: Austenitic, Ferritic, Martensitic, and Duplex. Each family provides a specific set of advantages and disadvantages, and material selection should be based on the specific application the material will be used for. For this study, the processing, microstructure, and performance of the four families of stainless steels will be compared in the context of medical device applications. The most important factors in medical device materials are biocompatibility, surface properties, mechanical properties and life span/corrosion resistance. This study will focus on medical devices that will be permanently …


Comparison Of Four Chip-Seq Analytical Algorithms Using Rice Endosperm H3k27 Trimethylation Profiling Data., Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng Sep 2011

Comparison Of Four Chip-Seq Analytical Algorithms Using Rice Endosperm H3k27 Trimethylation Profiling Data., Brandon M. Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng

BCoE Publications

Chromatin immunoprecipitation coupled with high throughput DNA Sequencing (ChIP-Seq) has emerged as a powerful tool for genome wide profiling of the binding sites of proteins associated with DNA such as histones and transcription factors. However, no peak calling program has gained consensus acceptance by the scientific community as the preferred tool for ChIP-Seq data analysis. Analyzing the large data sets generated by ChIP-Seq studies remains highly challenging for most molecular biology laboratories.Here we profile H3K27me3 enrichment sites in rice young endosperm using the ChIP-Seq approach and analyze the data using four peak calling algorithms (FindPeaks, PeakSeq, USeq, and MACS). Comparison …