Biomedical Engineering and Bioengineering Commons^™

Neonatal Intraocular Injection And Delivery System, Nina Treacher, Cory Ramsey, Marie Kosco, Jackson Carrell

Williams Honors College, Honors Research Projects

The proposed project is a way to deliver liquid medicine into the neonatal eye to prevent retinal detachment with lower risk for bacterial infection and drug misplacement. Currently, ophthalmologists use diabetic needles to introduce medication to the neonate eye. They estimate the injection location with hand-held calipers. This may allow the medicine to be misplaced from poor needle placement and introduce preventable error. The goal is to improve the delivery system ophthalmologists currently use by investigating ways to alter or enhance commonly used injection systems to make the procedure safer and more effective.

Side Cutting Biopsy Needle For Endoscopes, Cade Smarr, Ella B. Brinkman, Christine Skakun, Vincent Grosso

Williams Honors College, Honors Research Projects

Develop a side cutting biopsy needle that fits through the working channel of the endoscope similar to stereotactic needle with syringe suction to overcome the small biopsy samples due to instrument size limitations. The problem users are facing is that the biopsy samples through the endoscope are small secondary to instrument size limitations. The idea for this problem is to develop a side cutting biopsy needle that fits through the working channel of the endoscope similar to stereotactic needle, syringe suction.

Enhancing Dental Aligners With Direct 3d Printing Manufacturing, Erin Clark, Lauren Ickes, Tyler Madison

Williams Honors College, Honors Research Projects

Replacement of thermoforming with direct 3d printed aligners, molding appliances for dental and alveolar movement. Currently the process involved requires 3d printing models and plastic thermoforming, trimming and polishing to fabricate the end product. If possible a product that could be 3d printed that had stress retention, crack resistance, and stain resistance properties delivered in thickness between .030 and .040 inches.

Frostflex, Isaac Edmondson, Caleb Edmondson, Joey Esker, Nadine Salem

Williams Honors College, Honors Research Projects

Research has shown that the majority of heat lost during physical exercise leaves the body through the hands, feet, and the face. Our design project seeks to develop cooling glove technology to increase the rate at which heat leaves the body during recovery from physical exertion. The goal of this project was to investigate different ways in which heat absorption through various mediums can be manipulated and scaled into an adaptable, flexible design in which athletes of all levels, from recreational to professional, can improve their physical performance with the use of our gloves. Deliverables include a functional prototype, product …

Kv2.1 Dysfunction Underlies The Onset Of Symptoms In Sod1-G93a Mouse Model Of Als, Andrew J. Deutsch

Browse all Theses and Dissertations

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease which targets motoneurons (MNs), yet underlying disease mechanisms are not well understood. Evaluating the intrinsic excitability of MNs in ALS could lead to a better understanding of mechanisms causing neurodegeneration. The SOD1-G93A (SOD) model is the most commonly studied animal model of ALS. However, past studies have shown highly conflicting results on SOD MN excitability. Interestingly, I show that depending on the level of membrane depolarization, SOD MNs show opposite results of both hyper- and hypo-excitability. This reveals that differences in the methodology of measuring excitability can heavily impact the study results. …

Lipin1 Improves Membrane Integrity In Dystrophic Muscles Of Mdx Mice, Abdulrahman Jama

Browse all Theses and Dissertations

Duchenne muscular dystrophy (DMD) is an X-linked genetic disorder that affects 1 in 3500 male births worldwide. It is characterized by mutations in the dystrophin gene that results in the loss of functional dystrophin. Dystrophin deficiency leads to instability of the sarcolemma alongside increased inflammation, necrosis and fibrosis resulting in membrane rupture and eventual muscle fiber death. There are currently no effective treatments for DMD. Here we show that Lipin1 expression is significantly downregulated at the mRNA and protein levels in gastrocnemius muscle of mdx mice, the DMD mouse model. Lipin1 has a dual function as a phosphatidic acid phosphatase …

Dna Instability At (Attct) Microsatellites In Human Cells, Venicia Alhawach

Browse all Theses and Dissertations

Microsatellites are short tandem repeats of DNA (1-9 nucleotides) that are unstable in the genome. They can expand and contract which leads to mutations and rearrangements that jeopardize genomic integrity. When encountered by a replication fork, repeats of these microsatellites can form non-B DNA structures which cause replication forks to stall and collapse eventually leading to double stranded breaks (DSBs) and replication stress. One form of repair of replication dependent DSBs happens via break induced replication (BIR), a highly mutagenic repair pathway. The main objective of this study is to understand how ATTCT pentanucleotide repeats affect replication and chromosomal instability …

Microsatellite Induced Genomic Instability And Mutagenesis Through Break Induced Replication, Rujuta Yashodhan Gadgil

Browse all Theses and Dissertations

Faithful DNA replication is essential to maintain genomic integrity. Compromises in this process are among the prime causes of cancer and other genetic disorders. Among several factors that can interfere with error-free DNA replication, the formation of non-B DNA structures by microsatellite sequences is critical. Microsatellites are 1-9 bp long tandem repetitive regions that can form secondary structures like hairpins, triplex, Gquadruplex etc. and undergo expansions due to replication fork stalling to cause several diseases. Hairpin forming microsatellites have been shown to induce DNA DSBs and lead to genetic instability and mutagenesis. The goal of this study is to understand …

An Experimental Study On The Mechanical Properties And Chemical Composition Of Lcd 3d Printed Specimens, Sebastian Gomez

College of Graduate Studies: Theses & Dissertations

Additive manufacturing technologies have been enhanced throughout the years yet have surprised the manufacturing industry due to their high-end surface finish and dimensional accuracy. Different experiments have been done to identify a specific phenomenon known in the vat-polymerization field. Distortion and dimensional inaccuracy tend to affect the overall properties of the process, either physical or chemical. This approach allows the understanding of how the physical properties have been affected and how to study the chemical properties to avoid this type of phenomenon. The chemical reaction between polymer and UV light has been studied and experimented with to the point that …

Synthesis And Processing Of Pcl And Irdye Nanoparticles For Application In Drug Release Mechanism, Michael Adeniyi

College of Graduate Studies: Theses & Dissertations

The objective of this study is to produce core-shell nanoparticles utilizing PCL and IRDye and investigate the nanoparticle release mechanism. Biodegradable polymer, Polycaprolactone (PCL), was electrosprayed separately with two types of IRDye, NHS and Dextran Texas red. The solution of PCL was formed by mixing PCL in a solution of 9.47ml Acetic Acid, 9.47ml Formic Acid, and 1.05ml Trifluoroethanol, following a ratio of 9:9:1. The two solutions of IRDye were prepared by mixing 2mg of the IRdye with 20ml of DMF at a rate of 0.1mg/ml.

The NHS IRDye was electrosprayed coaxially with PCL and the Dextran Texas red dye …

Characterization And Decoding Of Speech Activity From Intracranial Signals, Pedram Zanganeh Soroush

Theses and Dissertations

Speech is the first and foremost means of human communication. Millions of people worldwide suffer from severe speech disorders due to neurological diseases such as amyotrophic lateral sclerosis (ALS), brain stem stroke, and severe paralysis. A speech neuroprosthesis that decodes speech directly from neural signals could dramatically improve life for these individuals. Recent studies have demonstrated that it is possible to decode and synthesize various aspects of acoustic speech directly from intracranial measurements of electrophysiological brain activity. For those who have completely lost the ability to speak, the objective is to synthesize acoustic speech directly from brain activity during imagined …

Advanced Modeling And Innovative Transcranial Magnetic Stimulation Coil Designs For The Treatment Of Neurological Disorders, Mohannad Tashli

Theses and Dissertations

Transcranial magnetic stimulation (TMS) is a safe, effective and non-invasive treatment for several mental and psychiatric disorders. TMS is an FDA approved treatment and is commonly applied to patients who do not respond to medications for the treatment of clinical depression, smoking cessation, obsessive-compulsive disorder and migraine. Recently, there has been an increase in the development of electromagnetic neuromodulation techniques targeted at enhancing the effectiveness of TMS devices for the treatment of mental diseases. In TMS stimulation, focality is an important factor which determines the specificity of the pulses induced in different brain tissues. The electromagnetic pulses must be confined …

การพัฒนาไฮโดรเจลเจลาตินที่มีอนุภาคนาโนทองคำ สำหรับการวัดปริมาณรังสี, ภาวิณี ชูสินธ์

Chulalongkorn University Theses and Dissertations (Chula ETD)

ปัจจุบันรังสีรักษามีบทบาทสำคัญในการช่วยรักษาโรคมะเร็ง โดยการให้ปริมาณรังสีสูงสุดที่เนื้อเยื่อมะเร็ง และก่อให้เกิดผลกระทบต่อเนื้อปกติน้อยที่สุด ดังนั้นความถูกต้องของปริมาณรังสีจึงเป็นสิ่งสำคัญ การวัดปริมาณรังสีเป็นสิ่งหนึ่งที่ช่วยยืนยันและสร้างความมั่นใจให้ผู้ป่วยได้ การศึกษาวิจัยนี้ได้พัฒนาอุปกรณ์การวัดปริมาณรังสีในรูปแบบไฮโดรเจลชนิดใหม่ สำหรับการวัดปริมาณรังสี ที่มีคุณลักษณะเฉพาะตัวในการขึ้นรูปได้หลายมิติ และมีความเข้ากันได้ทางชีวภาพจากพอลิเมอร์ธรรมชาติ เช่น เจลาตินและอะกราโรส ผสมกับสารละลายทองคำ โดยอาศัยนวัตกรรมนาโนเทคโนโลยี และการเปลี่ยนแปลงปฏิกิริยาทางเคมีของไฮโดรเจลเมื่อมีการฉายรังสี ทำให้เกิดการสังเคราะห์อนุภาคนาโนทองคำที่มีคุณสมบัติทางแสงที่โดดเด่นและเฉพาะตัวเชิงพื้นผิว ทำให้มองเห็นการเกิดการเปลี่ยนแปลงสีของไฮโดรเจลด้วยสายตาเปล่าได้อย่างรวดเร็วภายใน 10 นาที ภายหลังจากการได้รับรังสี รวมทั้งวัดค่าการดูดกลืนแสงในช่วงปริมาณรังสี 0-5 Gy ด้วยเทคนิคสเปกโตรโฟโตเมตรีที่ความยาวคลื่นดูดกลืนสูงสุดที่ 540 nm พบว่า ปฏิกิริยาทางเคมีภายในไฮโดรเจลเกิดขึ้นได้สมบูรณ์เมื่อได้รับรังสีผ่านไปแล้ว 2 ชั่วโมง โดยมีขีดความสามารถในวัดต่ำสุด คือ 0.37 Gy โดยมีความคงตัวของค่าการดูดกลืนแสงหลังจากได้รับรังสีไปแล้วนานถึง 7-14 วัน รวมทั้งให้ค่าความสัมพันธ์เชิงเส้นตรงของไฮโดรเจลเจลาตินและไฮโดรเจลเจลาตินผสมอะกราโรส เท่ากับ 0.9996 และ 0.9994 ตามลำดับ จากผลการทดลองนี้แสดงให้เห็นถึงความสามารถของไฮโดรเจลชนิดนี้ในการตอบสนองต่อรังสีที่รวดเร็ว ในช่วงปริมาณรังสีต่ำที่ใช้ทางคลินิค ที่มีความคงตัวและความถูกต้องแม่นยำสูง เหมาะสำหรับการนำไปประยุกต์ใช้ในงานรังสีรักษาต่อไป

Measurement Of Fluid Movement Throughout The Brain Via Multiple Magnetic Resonance Imaging Techniques During High-Definition Transcranial Direct Current Stimulation, Jack W. Beaty Mr

Dissertations and Theses

Transcranial Direct Current Stimulation (tDCS) is a non-invasive method of neuromodulation with applications in neuroscience, clinical care, and biomedical engineering. tDCS has been well established as a safe method of applying low amplitude current between two or more electrodes to alter excitation thresholds and neuroplasticity. Recently, in-vitro and clinical studies have suggested that DC stimulation can induce a transient, polarity-specific, effect of increased water exchange across the blood-brain barrier (BBB). The electroosmotic effect, the proposed phenomenon driving water exchange, is a biophysical response of charged ions moving across an oppositely-charged surface, i.e., the tight junction, when subjected to an electric …

Assessment Of Material Properties In Bone Surrounding Microdamage, Niovi Dollas

Dissertations and Theses

Bisphosphonates [BPs] are the mainstay for osteoporosis treatment. They suppress bone resorption/remodeling, preventing bone loss. However, BPs also suppress the beneficial bone remodeling that replaces microscopically damaged bone that occurs from normal mechanical wear-and-tear or fatigue, leading to impaired tissue material properties and in some instances atypical femoral fractures.

In these studies, we assessed the effects of acute fatigue, fatigue induced remodeling, and fatigue microdamage with remodeling suppression using the clinical BP, alendronate [ALN], on local bone material properties. Studies were performed on cortical bone sections from rat ulnae into which fatigue damage had been introduced in vivo. Rat …

Use Of Bioheat Modeling To Characterize And Optimize Implantable Medical Devices And Neuromodulation Technologies, Adantchede Louis Zannou

Dissertations and Theses

Medical device development includes prototyping, benchtop characterization, preclinical studies, and clinical trials. Understanding the limitations and potential adverse effects of medical devices prior to their administration in humans is a crucial first step. Optimizing medical devices is essential to employing technology and improving patients care. Computational modeling is widely adopted as a powerful tool to predict stimulation/recording parameter optimization, rapid electrode/device prototyping, investigating novel mechanism of action, and testing working principles of any medical devices. Many implantable neuromodulation technologies including Spinal Cord Stimulation (SCS), which provide substantial therapeutic benefit for patient population with lower back pain, produces heat via the …

Tdcs Effects On Synaptic Plasticity And Motor Skill Learning, Forouzan Vasheghani Farahani

Dissertations and Theses

Transcranial direct current stimulation (tDCS) is a non-invasive brain stimulation technique that involves the application of low-intensity constant current to the brain through electrodes placed on the scalp. Its potential to enhance brain function and treat brain-related disorders has led to its increasing popularity due to its safety, simplicity, and affordability. However, its effectiveness remains a topic of debate.

Mechanically Driven In Vivo Osteocyte Ca2+ Signaling: Aging And Pharmacologic Effects, James Padgett

Dissertations and Theses

Bone’s ability to respond and adapt to mechanical loading declines significantly with age which is a major contributor to bone fragility. It is widely accepted that osteocytes are the key cells responsible for orchestrating the development of the “ideal” skeleton. This ability is attributed to osteocyte’s role as the primary mechanosensing cell that is responsible for maintaining the skeleton’s integrity throughout life. Recent work from our laboratory has shed light into how osteocytes respond to mechanical loading in vivo. The breakthrough approaches that enabled these discoveries were development of: (1) the first ever reporter mouse model with a genetically encoded …

Optimization Of Optical Nanosensor Response For The Detection Of Anthracyclines Using A Binary Machine Learning Classifier, Myesha Thahsin

Dissertations and Theses

Pharmacokinetic variables such as interindividual variation in metabolizing and eliminating drugs makes dose selection of chemotherapeutic anthracyclines difficult. One potential solution to determining dosing levels of an anthracycline is the development of non-invasive sensors to monitor their pharmacology in vivo. Single-walled carbon nanotubes (SWCNT) have substantial potential for in vivo sensor development, as they exhibit near-infrared fluorescence in the tissue-transparent window and a robust response to their local environment. An emerging method for evaluating and optimizing SWCNT sensor response is through machine learning. In this study, anthracyclines Daunorubicin, Doxorubicin, Epirubicin, Mitoxantrone and Idarubicin, were used to interrogate 12 SWCNT preparations …

Ultra-High Field Mri Methods For Precise Anatomical And Spectroscopic Measurements In The Brain And Application To Neurological And Neuropsychiatric Diseases, Judy Alper

Dissertations and Theses

Neurological and neuropsychiatric diseases and disorders are a major burden on society, impairing the health and functioning of millions of people every year. There is a need to define the biological bases of these diseases and identify potential biomarkers to improve diagnosis, monitoring, and treatment efficacy across multiple diseases.

Magnetic resonance imaging (MRI) is a noninvasive imaging technique which facilitates detection of brain lesions and visualization of the brain overall. However, limitations in contrast and resolution at clinical field strengths may hinder investigation of the underlying biological mechanisms of these diseases. Ultra-high field MRI scanners, such as those at 7-Tesla, …

The Wound Healing And Antibacterial Properties Of Mesenchymal Stromal Cell Extracellular Matrix Nanoparticles, Emily N. Wandling

Theses and Dissertations

Treatments for acute respiratory distress syndrome (ARDS) are still unavailable and the prevalence of the disease has only increased due to the Covid-19 pandemic. Mechanical ventilation regiments are still utilized to support declining lung function, but they also contribute to lung damage and increase the risk of bacterial infection. The anti-inflammatory and pro-regenerative abilities of mesenchymal stromal cells (MSCs) have shown to be a promising therapy for ARDS. We propose to utilize the regenerative effects of MSC secretome and the extracellular matrix (ECM) into a nanoparticle. Our mouse MSC (MMSC) ECM nanoparticles were characterized using size, zeta-potential, and mass spectrometry …

Quantifying Fibronectin Mechanical Properties Using Antibody-Mediated Optical Tweezing (Amot), Caleb Dalton

Theses and Dissertations

Despite decades of investigations into fibronectin (FN) fibrillogenesis, fibril mechanics remain unclear. One of the most important roles for FN fibrils is in the arena of cellular mechanotransduction. Numerous studies have demonstrated that cells sense and respond to the mechanical properties of their surroundings; since FN fibrils are a major constituent of the ECM that links cells to their surroundings, mechanotransduction cannot be fully understood without understanding the mechanical properties of FN fibrils. In this proposal, a novel biomechanical assay is developed to probe isolated FN fibrils and quantify their response to specific loading conditions. This will be accomplished by …

Leveraging Cell-Substrate Adhesion And Cell Migratory Properties In Skeletal Muscle Constructs And Cancer Metastasis Assays, Lauren E. Mehanna

Theses and Dissertations--Chemical and Materials Engineering

Volumetric muscle loss (VML) remains one of the few skeletal muscle injuries without a reliable and repeatable treatment. In large volume muscle injuries, muscle fibers as well as the surrounding connective tissue are damaged, preventing therapeutic muscle stem cells, called myogenic progenitor cells (MPCs), from reaching the injury site and initiating repair. There is a clinical need to rapidly fabricate in vitro muscle tissue constructs that mimic the native tissue organization, with aligned myotubes, for insertion and integration at the patient’s injury site. In this dissertation, we utilize the MPC’s natural propensity to close gaps across an injury site to …

Identification Of Proteins Involved In Cell Membrane Permeabilization By Nanosecond Electric Pulses (Nsep), Giedre Silkuniene, Uma Mangalanathan, Alessandra Rossi, Peter A. Mollica, Andrei G. Pakhomov, Olga N. Pakhomova

Bioelectrics Publications

The study was aimed at identifying endogenous proteins which assist or impede the permeabilized state in the cell membrane disrupted by nsEP (20 or 40 pulses, 300 ns width, 7 kV/cm). We employed a LentiArray CRISPR library to generate knockouts (KOs) of 316 genes encoding for membrane proteins in U937 human monocytes stably expressing Cas9 nuclease. The extent of membrane permeabilization by nsEP was measured by the uptake of Yo-Pro-1 (YP) dye and compared to sham-exposed KOs and control cells transduced with a non-targeting (scrambled) gRNA. Only two KOs, for SCNN1A and CLCA1 genes, showed a statistically significant reduction in …

Biom 4760: Biomedical Engineering Design Principles (Syllabus), Carl D. Herickhoff

Biomedical Engineering Syllabi Archive

Course Description: Practical design methods emphasizing the front-end or concept development stage of engineering design; design a system, component, or process to meet desired needs within realistic constraints with functioning on multi-disciplinary teams.

Biom 3110(Honors): Medical Physiology (Syllabus), Bradford D. Pendley

Biomedical Engineering Syllabi Archive

Course Description: Basic principles of human physiology and how these are applied in medicine and biomedical engineering problem and devices; physiological principles using appropriate mathematical and engineering models to construct an understanding of how the body works as an integrated system.

Biom 1720: Introduction To Biomedical Engineering Tools (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Use of computer tools for data analysis, presentation, documentation; introduction to programming; individual and group design projects.

Biom 2720: Experimental Design And Analysis For Biomedical Engineering (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Application of probability, statistics, error analysis, uncertainty in design and performance of biomedical engineering experimentation; discussion and evaluation of common experimental designs for medical device development.

Engr 1009: Preparation For Engineering Problem Solving (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Applications of algebra and trigonometry to engineering problems. Accelerated preparation for an engineering or technology major.

Investigating Tgf-Β1 And Fibronectin Signaling In Low Oxygen Environments, Caitlin E. Williams

Theses and Dissertations

Breast cancer is the second leading cause of death in women, second to lung cancer. It’s one of the most well-known cancers, with almost 300,000 new cases estimated to be diagnosed in 2023. Breast cancer often begins in ductal epithelial cells, and these cells will typically undergo a cellular transformation process known as epithelial-mesenchymal transition (EMT) in early stages. Breast cancer becomes deadly when it reaches a metastatic stage. As a part of the metastatic process, transformed cells will conduct remodeling of the extracellular matrix (ECM) to allow for migration of an otherwise non-migratory cell type.

As dense tumors form, …