Biomedical Engineering and Bioengineering Commons^™

Effects Of Surface Topography On Macrophages And Bacterial Cells, Joseph Carnicelli

Theses - ALL

An association has been found between the texture of breast implants and anaplastic large cell lymphoma, which led to some textured implants to be withdrawn from the market in 2019. There is evidence that these cancers are associated with the harboring of bacteria on the surfaces of the textured implants. It is possible that specific topographic features hinder the removal of attached bacteria by inhibiting macrophage phagocytosis or promoting biofilm formation. Here we examine how bacteria and macrophages interact with recessive surface topographies as analogs to the surfaces seen on textured breast implants. Changes in bacteria morphology were observed among …

Vibrotactile Perception For Sensorimotor Augmentation: Perceptual Discrimination Of Vibrotactile Stimuli Induced By Low-Cost Eccentric Rotating Mass Motors At Different Body Locations In Young, Middle-Aged, And Older Adults, Ella Pomplun, Ashiya Thomas, Erin Corrigan, Valay A. Shah, Leigh A. Mrotek, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

Sensory augmentation technologies are being developed to convey useful supplemental sensory cues to people in comfortable, unobtrusive ways for the purpose of improving the ongoing control of volitional movement. Low-cost vibration motors are strong contenders for providing supplemental cues intended to enhance or augment closed-loop feedback control of limb movements in patients with proprioceptive deficits, but who still retain the ability to generate movement. However, it remains unclear what form such cues should take and where on the body they may be applied to enhance the perception-cognition-action cycle implicit in closed-loop feedback control. As a step toward addressing this knowledge …

Advanced In Vitro Models For Studying Bone Physiology, Kairui Zhang

Dissertations - ALL

Bone is a highly calcified organic-inorganic composite tissue with complicated hierarchical structure. The presence of complex multi-cellular organization within opaque mineralized matrix makes it challenging to use conventional methods to study in vivo bone physiology even using model animals. To address this challenge, numerous in vitro models have been developed to study bone physiology under well-defined and repeatable experimental conditions although proving their physiological relevance remains a key challenge. This work aims to design and develop new in vitro models that better represent in vivo bone physiology with defined control over chemical and physical microenvironments, at low costs and high …

Aqueous Humor Dynamics And Compound Action Potentials In The Anesthetized And Conscious Freely Moving Rat, Youssef Mohamed

USF Tampa Graduate Theses and Dissertations

Vision is dependent on the proper functioning of many intricate components of the eye. Aqueous humor dynamics function to keep the eye inflated at the right pressures and nourish avascular tissue in the eye while properties of the corneoscleral shell dictate how dynamic changes in volume and pressure affect tissue at the optic nerve head. Retinal ganglion cells exit the globe at the optic nerve head and carry all of the visual information to the brain for perception of visual stimulus. In this dissertation, we aim to present a lumped parameter model of the eye that can accurately describe the …

Optimization Of A Novel Barnes Maze Protocol For Assessing Antioxidant Treatment Of Traumatic Brain Injury, Connor C. Gee

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Current preclinical research into traumatic brain injury focuses heavily upon cellular and molecular testing to determine the effects of injury and potential benefits of neuroprotective treatments. While this may be a useful method, some argue that an increased focus on behavioral testing could lead to better clinical translation as these assays assess the longer term, downstream effects from a brain injury. The most characterized behavioral tests used in traumatic brain injury research are the spatial learning and memory paradigms, Morris Water Maze and Barnes Maze. The Morris Water Maze is the most used of theses paradigms and relies on spatial …

Fabrication Of Polymeric Microparticles Loaded With Zoledronic Acid To Treat Osteoarthritis, Yohely Maria Espiritusanto

Theses - ALL

Osteoarthritis (OA), a disease caused by wearing and tearing of articular cartilage, affectsover 32.5 million Americans. Synovial inflammation is now recognized as a major contributor to OA progression and pain. Activated synovial macrophages in an OA joint are believed to play a major role in low grade inflammation found in OA. Bisphosphonates such as zoledronic acid (ZA) are known to induce apoptosis specifically in macrophages and several of them are being evaluated as a disease-modifying osteoarthritis drug in clinical trials. However, ZA is rapidly cleared from the joint after systemic or localized direct injection into the joint. In this study …

Long Non-Coding Rna Pvt1 – An Exploratory Study In Ovarian And Endometrial Cancer, Kevin Tabury

Theses and Dissertations

Gynecological cancers, ovarian and endometrial cancer, are still leading causes of cancer-related death in women worldwide. Early detection methods as well as treatment resistance remain a challenge. Long non-coding RNAs (lncRNAs) are emerging as therapeutic targets with diagnostic and prognostic potential with lncRNA PVT1 being one of them.

Here I test and demonstrate the role of PVT1 in ovarian cancer growth and metastasis. PVT1 is amplified and overexpressed in ovarian cancer and has predictive value for survival and response to targeted therapeutics. We find that expression of PVT1 is regulated by tumor cells in response to cellular stress, particularly loss …

The Effect Of Pulsed Field Dc Electrophoresis And Field Amplified Sample Stacking On The Microchip Electrophoretic Separation Of Organic Dyes, Travis Geoffrey Stewart

Theses and Dissertations

The utility of field amplified sample stacking and pulsed field electrophoresis toward improving electrophoretic outcomes was studied with regards to the electrophoretic separation of three organic dyes rhodamine B, 2’,7’-dichlorofluorescein, and fluorescein salt in microchip electrophoresis conditions. In this study, there were four experimental groups: nonstacking nonpulsed, nonstacking pulsed, sample stacking nonpulsed, and sample stacking pulsed.

Electrophoretic outcomes were evaluated by examining the electrophoretic separations under an epifluoresence detection method, plotting the signal intensities vs. time, and comparing separation resolutions and signal-to-noise ratios between experimental groups. From this it was shown that sample stacking nonpulsed conditions yielded the best outcome …

Role Of Epigenome In Regulation Of Inflammation By Ahr Ligands 2,3,7,8-Tetrachlorodibenzo-P-Dioxin And 6-Formylindolo[3,2-B] Carbazole, Alkeiver Cannon

Theses and Dissertations

Autoimmune Hepatitis (AIH) is a chronic inflammatory disease of the liver mediated by immune cells and characterized by a variety of parameters including circulating autoantigens, elevated immunoglobulin G (IgG) and aminotransferases, and interface hepatitis. Unfortunately, despite treatment with broadly immunosuppressive drugs, the disease progresses to cirrhosis and end-stage liver disease in several cases. In order to develop a more specific treatment, the mechanisms governing the liver injury resulting from inflammation and autoimmunity need to be elucidated.

For decades, activation of Aryl Hydrocarbon Receptor (AhR) was excluded from consideration as a therapeutic approach due to the potential toxic effects of AhR …

Neurochemical, Molecular, And Behavioral Effects Of Intranasal Insulin, Jennifer Marie Erichsen

Theses and Dissertations

Age-related cognitive decline (ARCD) is one of the most dreaded aspects of growing old and a public health concern. Unfortunately, there is currently no treatment that effectively ameliorates ARCD. In recent decades, intranasal insulin (INI) has demonstrated promising memory enhancements for rodents and individuals with Alzheimer’s disease, both in basic science research laboratories and multi-center clinical trials. Other studies have shown INI improves memory and cognition in healthy rodents and humans, indicating that INI may hold promise as a successful ARCD therapeutic. However, there is a glaring lack of evidence regarding how INI produces these effects. The goal of these …

Role Of Ahr In The Epigenetic Regulation Of Immune Cells In Lungs During Acute Respiratory Distress Syndrome, Bryan Latrell Holloman

Theses and Dissertations

Acute lung injury and acute respiratory distress syndrome (ALI/ARDS) arises from pulmonary inflammatory diseases that stem from direct and indirect activation of immune cells. Severe complications from ALI/ARDS arise when inflammatory mediators initiate an overzealous immune response leading to the destruction of lung epithelial cell barriers, which causes systematic oxygen deprivation. Infiltrating innate immune cells drive the immune response during the acute phase of a lung injury. However, I3C, a naturally occurring AhR ligand found in cruciferous vegetables such as broccoli, collard greens, and kale, plays a crucial role in suppressing inflammatory mediators through its immunomodulatory functionality, which regulates both …

Processing Time, Temperature, And Initial Chemical Composition Prediction From Materials Microstructure By Deep Network For Multiple Inputs And Fused Data, Amir Abbas Kazemzadeh Farizhandi, Mahmood Mamivand

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Prediction of the chemical composition and processing history from microstructure morphology can help in material inverse design. In this work, we propose a fused-data deep learning framework that can predict the processing history of a microstructure. We used the Fe-Cr-Co alloys as a model material. The developed framework is able to predict the heat treatment time, temperature, and initial chemical compositions by reading the morphology of Fe distribution and its concentration. The results show that the trained deep neural network has the highest accuracy for chemistry and then time and temperature. We identified two scenarios for inaccurate predictions; 1) There …

Biofeedback Technologies As Extended Cognition: A Philosophical Analysis, Haesoo Park

Student Publications

Every year technologies become more sophisticated and more accessible. Some have become a seamless extension of mind, so much so that they are better understood no longer as tools, but as integral parts of how our mind works. Biofeedback devices are examples of such technologies that are increasingly used in institutional contexts and for personal use. They offer a presumed scientific and objective basis for life decisions and behavioral health interventions, as well as a promise of new forms of self-knowledge. Yet in the very design of biofeedback technologies are cultural and institutional values that are rarely critically appraised. This …

A Protein-Based Therapeutic Combination For The Treatment Of Hard-To-Heal Wounds, Graham L. Strauss

USF Tampa Graduate Theses and Dissertations

Chronic wounds present many clinical challenges in relation to the successful treatment and closure of the damaged tissue. Most current treatment methods focused on one or two aspects to drive wound closure, while most chronic wounds are multifactorial environments with many of those dependencies relying on the termination of one another to effectively gain tissue construction, closure, and full skin thickness and composition. Natural wound healing processes allude to potential biologics that can impede the chronic breakdown of tissue, while restoring deposition of new tissue, and effectively leading to a healed wound. Proteases secreted by the body’s immune system lay …

Reduced Chest Computed Tomography Scan Length For Patients Positive For Coronavirus Disease 2019: Dose Reduction And Impact On Diagnostic Utility, Sara Principi, Stacy D. O'Connor, Frank Luba, Taly Gilat Schmidt

Biomedical Engineering Faculty Research and Publications

Objective

This work aimed to retrospectively evaluate the potential of dose reduction on chest computed tomography (CT) examinations by reducing the longitudinal scan length for patients positive for coronavirus disease 2019 (COVID-19).

Methods

This study used the Personalized Rapid Estimation of Dose in CT (PREDICT) tool to estimate patient-specific organ doses from CT image data. The PREDICT is a research tool that combines a linear Boltzmann transport equation solver for radiation dose map generation with deep learning algorithms for organ contouring. Computed tomography images from 74 subjects in the Medical Imaging Data Resource Center–RSNA International COVID-19 Open Radiology Database data …

The Value Of High Intensity Locomotor Training Applied To Patients With Acute-Onset Neurologic Injury, Meghan Fahey, Gabrielle Brazg, Christopher E. Henderson, Abby Plawecki, Emily H. Lucas, Darcy S. Reisman, Brian D. Schmit, T. George Hornby

Biomedical Engineering Faculty Research and Publications

The purpose of this review is to delineate some of the evidence regarding the effects of exercise intensity during locomotor training in patients with stroke and iSCI. We provide specific definitions of exercise intensity used within the literature, describe methods used to ensure appropriate levels of exertion, and discuss potential adverse events and safety concerns during its application. Further details on the effects of locomotor training intensity on clinical outcomes, and on neuromuscular and cardiovascular function will be addressed as available. Existing literature across multiple studies and meta-analyses reveals that exercise training intensity is likely a major factor that can …

Optimizing Left Ventricular Assist Device Hemodynamics Via Patient Specific Computational Analysis, Jasmine Josefina Martinez

Theses and Dissertations

The best treatment for patients with end stage heart failure is a heart transplant but given the scarcity of donor hearts, a promising alternative treatment has become left ventricular assist devices (LVAD). However, complications such as right heart failure, stroke, and adverse hemodynamic outcomes continue to occur. This thesis will cover investigations into continuous flow LVAD treatment optimization techniques to improve patient outcomes. Optimization techniques explored include an in-house developed optimization algorithm that is completed in three phases on a computational lumped parameter model that is representative of the cardiovascular system using an electrical circuit analogy. This three-phase optimization technique …

Electro-Mechanical Data Fusion For Heart Health Monitoring, Kemal Yakut

Theses and Dissertations

Heart disease is a major public health problem and one of the leading causes of death worldwide. Therefore, cardiac monitoring is of great importance for the early detection and prevention of adverse conditions. Recently, there has been extensive research interest in long-term, continuous, and non-invasive cardiac monitoring using wearable technology. Here we introduce a wearable device for monitoring heart health. This prototype consists of three sensors to monitor electrocardiogram (ECG), phonocardiogram (PCG), and seismocardiogram (SCG) signals, integrated with a microcontroller module with Bluetooth wireless connectivity. We also created a custom printed circuit board (PCB) to integrate all the sensors into …

Biomimetic Strategies To Control Therapeutic Release From Novel Dna Nanoparticles, Robert J. Mosley

Theses and Dissertations

The inherent chemical, mechanical, and structural properties of nucleic acids make them ideal candidates for the formulation of tunable, personalized drug nanocarriers. However, none so far have exploited these properties for the controlled release of therapeutic drugs. In this dissertation, a biomimetic approach to controlling drug release is exhibited by specifically manipulating the architecture of novel, DNA nanoparticles to take advantage of drug binding mechanisms of action. Rationally designed DNA strands were immobilized on gold surfaces via a terminal thiol modification. Immobilized monomers can be manipulated to form distinct monolayer architectures including flat, folded, coiled, or stretched structures. Increasing the …

Effectiveness Of Mesoporous Bioglass In Drug Delivery, Sheila Galbreath, Bailey Krueger, Taylor Frazier, Tarun Goswami

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Since the invention of bioactive glass 50 years ago, it has become a versatile material used in healthcare in a variety of applications and compositions. Bioactive glass has shown superior capabilities of drug delivery compared to traditional carriers. For example, time-released medications are less likely to reach toxic levels, while delivering a specific, therapeutic dose to a localized area. The objective of this paper is to investigate the properties and effectiveness of mesoporous bioglass (MBG) as a drug delivery carrier. A literature review of various polymer coated 45S5 Bioglass^® loaded with vancomycin was analyzed to determine their drug release …

Positive Rate-Dependent Action Potential Prolongation By Modulating Potassium Ion Channels, Candido Cabo

Publications and Research

Pharmacological agents that prolong action potential duration (APD) to a larger extent at slow rates than at the fast excitation rates typical of ventricular tachycardia exhibit reverse rate dependence. Reverse rate dependence has been linked to the lack of efficacy of class III agents at preventing arrhythmias because the doses required to have an anti-arrhythmic effect at fast rates may have pro-arrhythmic effects at slow rates due to an excessive APD prolongation. In this report we show that, in computer models of the ventricular action potential, APD prolongation by accelerating phase 2 repolarization (by increasing I_Ks) and decelerating …

Hybrid Rans-Les Hemolytic Power Law Modeling Of The Fda Blood Pump, Joseph Tarriela

USF Tampa Graduate Theses and Dissertations

This study applies the SBES and IDDES hybrid RANS-LES turbulence models along with the K-ω SST model to four flow conditions of the FDA blood pump. Validation of all three turbulence models show good agreement with experimental pressure and velocity fields. Evaluation of turbulent kinetic energy fields for the hybrid models show 80-90+% of kinetic energy is resolved in the rotor and diffuser regions of the pump. Hemolysis power law models were evaluated using the commonly used von Mises stress and additional energy dissipation stress (EDS). Results show viscous and Reynolds stresses computed with the K-ω SST under predict and …

An Improved Polynomial Chaos Expansion Based Response Surface Method And Its Applications On Frame And Spring Engineering Based Structures, Mhd A. Hafez

ETD Archive

In engineering fields, computational models provide a tool that can simulate a real world response and enhance our understanding of physical phenomenas. However, such models are often computationally expensive with multiple sources of uncertainty related to the model’s input/assumptions. For example, the literature indicates that ligament’s material properties and its insertion site locations have a significant effect on the performance of knee joint models, which makes addressing uncertainty related to them a crucial step to make the computational model more representative of reality. However, previous sensitivity studies were limited due to the computational expense of the models. The high computational …

Design And Finite Element Analysis Of Patient-Specific Total Temporomandibular Joint Implants, Shirish M. Ingawale, Tarun Goswami

Biomedical, Industrial & Human Factors Engineering Faculty Publications

In this manuscript, we discuss our approach to developing novel patient-specific total TMJ prostheses. Our unique patient-fitted designs based on medical images of the patient’s TMJ offer accurate anatomical fit, and better fixation to host bone. Special features of the prostheses have potential to offer improved osseo-integration and durability of the devices. The design process is based on surgeon’s requirements, feedback, and pre-surgical planning to ensure anatomically accurate and clinically viable device design. We use the validated methodology of FE modeling and analysis to evaluate the device design by investigating stress and strain profiles under functional/normal and para-functional/worst-case TMJ loading …

Zein And Lignin-Graft-Plga Nanoparticles As Agrochemical Delivery Systems To Soybean Plants, Eban A. Hanna

LSU Master's Theses

The majority of applied agrochemicals are lost to the environment due to their poor adhesion to plant tissues, resulting in multiple applications and subsequent environmental toxicity. This thesis focuses on reducing these consequences by entrapping agrochemicals in polymeric nanoparticles (PNPs). In the first section, zein nanoparticles (ZNPs) with entrapped methoxyfenozide (MFZ) (209.0 ± 5.6 nm, -42.1 ± 2.1 mV) were synthesized and used to facilitate the translocation of MFZ to the leaves and stems of soybean plants, as measured by LC-MS, under hydroponic conditions. The agrochemical concentration increased within the leaves over time from 0.04 to 2.35 μg/g at 0.2 …

Examining Metal Contents In Primary And Secondhand Aerosols Released By Electronic Cigarettes, Kashala Fabrice Kapiamba, Weixing Hao, Stephen Adom, Wenyan Liu, Yue-Wern Huang, Yang Wang

Chemistry Faculty Research & Creative Works

The usage of electronic cigarettes (ECs) has surged since their invention two decades ago. However, to date, the health effects of EC aerosol exposure are still not well understood because of insufficient data on the chemical composition of EC aerosols and the corresponding evidence of health risks upon exposure. Herein, we quantified the metals in primary and secondhand aerosols generated by three brands of ECs. By combining aerosol filter sampling and inductively coupled plasma mass spectrometry (ICP-MS), we assessed the mass of metals as a function of EC flavoring, nicotine concentration, device power, puff duration, and aging of the devices. …

Functional Requirements For A Samd14-Capping Protein Complex In Stress Erythropoiesis, Suhita Ray, Linda Chee, Yichao Zhou, Meg A. Schaefer, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods, Kyle J. Hewitt

Nebraska Center for Biotechnology: Faculty and Staff Publications

Acute anemia induces rapid expansion of erythroid precursors and accelerated differentiation to replenish erythrocytes. Paracrine signals—involving cooperation between stem cell factor (SCF)/Kit signaling and other signaling inputs—are required for the increased erythroid precursor activity in anemia. Our prior work revealed that the sterile alpha motif (SAM) domain 14 (Samd14) gene increases the regenerative capacity of the erythroid system in a mouse genetic model and promotes stress-dependent Kit signaling. However, the mechanism underlying Samd14’s role in stress erythropoiesis is unknown. We identified a protein-protein interaction between Samd14 and the α- and β-heterodimers of the F-actin capping protein (CP) complex. Knockdown of …

Exploring The Metabolic Landscape Of Pancreatic Ductal Adenocarcinoma Cells Using Genome-Scale Metabolic Modeling, Mohammad Mazharul Islam, Andrea Goertzen, Pankaj K. Singh, Rajib Saha

Department of Chemical and Biomolecular Engineering: Faculty Publications

Pancreatic ductal adenocarcinoma (PDAC) is a major research focus because of its poor therapy response and dismal prognosis. PDAC cells adapt their metabolism to the surrounding environment, often relying on diverse nutrient sources. Because traditional experimental techniques appear exhaustive to find a viable therapeutic strategy, a highly curated and omics-informed PDAC genome-scale metabolic model was reconstructed using patient-specific transcriptomics data. From the model-predictions, several new metabolic functions were explored as potential therapeutic targets in addition to the known metabolic hallmarks of PDAC. Significant downregulation in the peroxisomal beta oxidation pathway, flux modulation in the carnitine shuttle system, and upregulation in …

Microheater Stimulation Platform For Neural Cells, Haley Royce

USF Tampa Graduate Theses and Dissertations

Electrical stimulation is the basis of many biomedical devices like cochlear implants,pacemakers, and retinal implants. In these systems, current is applied to a desired tissue to effectively stimulate it. Unfortunately, this is not localized as the current will spread through the tissue, limiting the spatial resolution. Thus, alternative forms of stimulation are needed to improve device precision and resolution. This project explores microheaters as a stimulation platform that can be easily integrated with existing biomedical devices. Microheaters produce heat via the Joule heating effect wherein electrical current is run through high resistance materials to output thermal energy. They are highly …

Cardio-Net: A Matlab-Based Software For The Display And Diagnostic Utilization Of Vectorcardiograms, Ali H. Mannaa, Domenico Gatti

Medical Student Research Symposium

Background: The 12-lead technique is the standard in ECG, however alternate cardiography modalities such as vectorcardiography (VCG) exist . While the VCG modality offers unique clinical metrics and certain advantages over ECG, it is hardly utilized due to it being more difficult to obtain than ECG. Here we introduce Cardio-Net, a MATLAB-based software that uses standard 12-lead ECG data to generate and visualize VCGs. Furthermore, we demonstrate the diagnostic potential of VCG by utilizing a recurrent neural network (RNN) to accurately classify vectorcardiograms.

Methods: MATLAB version 2019b and the following toolboxes were used for data processing: Deep learning, …