Biomedical Engineering and Bioengineering Commons^™

Mapping The Domain Of Rna Helicase Ddx1 That Interacts With The Ns1 Of Influenza A Viruses, Elise Wyatt

Biomedical Engineering Undergraduate Honors Theses

Of the known influenza virus strains, influenza A viruses (IAVs) are the most catastrophic due to their highly contagious nature and possibly life-threatening symptoms. IAVs invade a host cell and enter the nucleus where they use the cell’s nuclear machinery for replication of their viral RNA genome which is then exported to neighboring cells to establish a productive infection. Host pathogen recognition receptors (PRRs) respond to viral infection by signaling the cell to produce type I interferons (IFNs) to fight the foreign invader. Non-structural protein 1 (NS1) of IAVs, a major component in the regulation of viral replication, opposes host …

Developing Aligned Nerve Scaffolds In A 3d Type-I Collagen Gel, Gabriel David

Biomedical Engineering Undergraduate Honors Theses

Despite significant progress in the field of peripheral nerve repair, clinical success is still limited, leaving millions to suffer from peripheral neuropathy with billions spent every year for treatment. Nerve repair methods that are capable of maximizing the regenerative properties of peripheral nerves are greatly desired in the field of medical science. This research aims to fill the gap between modern methods and the future of nerve repair by creating type-I collagen scaffolds with aligned degradation pores that will assist and nurture nerves growing through them. This is achieved by incorporating adipose stem cells into type-I collagen hydrogels and aligning …

Electroactive Polymeric Composites To Mimic The Electromechanical Properties Of Myocardium In Cardiac Tissue Repair, Kaylee Meyers, Bruce Lee, Rupak Rajachar

Michigan Tech Publications, Part 1

Due to the limited regenerative capabilities of cardiomyocytes, incidents of myocardial infarction can cause permanent damage to native myocardium through the formation of acellular, non-conductive scar tissue during wound repair. The generation of scar tissue in the myocardium compromises the biomechanical and electrical properties of the heart which can lead to further cardiac problems including heart failure. Currently, patients suffering from cardiac failure due to scarring undergo transplantation but limited donor availability and complications (i.e., rejection or infectious pathogens) exclude many individuals from successful transplant. Polymeric tissue engineering scaffolds provide an alternative approach to restore normal myocardium structure and function …

Design Of Control Logic And The Human-Machine Interface For A Demonstration Plant Growth Chamber Implemented On A Programmable Logic Controller, Rachael Koehler

Biological and Agricultural Engineering Undergraduate Honors Theses

This honors thesis covers the planning, development, and implementation of system controls and human-machine interface (HMI) for a demonstration plant growth chamber. The work is a continuation of an ongoing project to be used as an educational and recruiting tool manifesting the skills acquired from the Biological and Agricultural Engineering Department at the University of Arkansas’ College of Engineering. This work includes emergency controls, overall design interface, and controls for both the aeration and lighting subsystems of the growth chamber. Overall design interface controls established included development of two user modes, Administrator and Visitor. The Administrator user will have full …

Performance And Economics Of Solar Inverters And Module Level Power Electronics In A 1 Mw Photovoltaic System, Maxwell Criswell

Biological and Agricultural Engineering Undergraduate Honors Theses

Photovoltaic solar panels convert sunlight to electricity in the form of direct current; therefore, a necessary component of every photovoltaic system is an inverter to convert the electricity to usable alternating current. There are various commercially available inverter technologies manufactured today such as microinverters, string inverters, and central inverters, as well as module level power electronic devices such as DC optimizers that are capable of improving system performance in string and central inverter systems. This thesis compares the performance and economics of five different inverter and module level power electronic systems through model simulation using Helioscope software. The five alternatives …

Design And Control Of A Peristaltic Pump To Simulate Left Atrial Pressure In A Conductive Silicone Model, Jeremy Collins

Mechanical Engineering Undergraduate Honors Theses

According to the CDC, atrial fibrillation is responsible for more than 454,000 hospitalizations and approximately 158,000 deaths per year. A common treatment for atrial fibrillation is catheter ablation, a process in which a long flexible tube is guided through the femoral artery and to the source of arrhythmia in the heart, where it measures the electrical potential at various locations and converts problematic heart tissue to scar tissue via ablation. This paper details the design and control of a low-cost ($400) peristaltic pump system using repetitive control to replicate blood pressure in the left atrium in a conductive silicone model …

Photobiomodulation Of Neural Stem Cell Differentiation Using Infrared (810 Nm) Laser Stimulation, Noemi Salgado Cordova

Bioengineering Theses - Archive

The standardized clinical use of photobiomodulation (PBM) across many applications has been obstructed due to the lack of understanding in how each of the parameters affect the end results. Although the optimal parameters for the therapy have been estimated with a level of uncertainty, the positive effects have been documented on cell differentiation, wound healing, brain modulation, etc. These positive effects observed by PBM have been attributed to the increase in reactive oxygen species (ROS), nitric oxide (NO), and ATP along other molecules generated by the stimulation of Cytochrome-C Oxidase (CCO). Although there is much uncertainty surrounding the coupling mechanisms …

Exploring Imaging Technology In The Diagnosis And Treatment Of Pediatric Medically Refractory Epilepsy With Intracranial Electroencephalography And Post-Surgical Evaluations, Nasheha Baset

Bioengineering Theses - Archive

Abstract Exploring Imaging Technology in the Diagnosis and Treatment of Pediatric Medically Refractory Epilepsy with Intracranial Electroencephalography and Post-Surgical Evaluations Nasheha Baset, MS The University of Texas at Arlington, May 2021 Supervising Professor: Dr. Christos Papadelis Epilepsy is a disorder that commonly causes seizures due to abnormal neurological activity, which can disrupt daily life. Of all patients with epilepsy, 60% suffer from focal epilepsy. Approximately 15% of these cases are considered to be drug resistant, or refractory, as the patient is not responsive to a combination of two or more anti-epileptic drugs (AED). Traditionally, approaches to treatment of medically refractory …

Knee Angles After Crosstalk Correction With Principal Component Analysis In Gait And Cycling, Jordan Skaro, Scott J. Hazelwood, Stephen M. Klisch

Biomedical Engineering

Principal component analysis (PCA) has been used as a post-hoc method for reducing knee crosstalk errors during gait analysis. PCA minimizes correlations between flexion–extension (FE), abduction–adduction (AA), and internal–external rotation (IE) angles. However, previous studies have not considered PCA for exercises involving knee flexion angles that are greater than those typically experienced during gait. Thus, the goal of this study was to investigate using PCA to correct for crosstalk during one exercise (i.e., cycling) that involves relatively high flexion angles. Fifteen participants were tested in gait and cycling using a motion analysis system. Uncorrected FE, AA and IE angles were …

Immunomodulatory Biomaterials For Cancer Immunotherapy, Larry Donnell Stokes Jr

Honors Theses

Cancer immunotherapy has become an effective treatment in the toolbox of oncologists. Immunotherapy offers a less toxic alternative to standard cancer treatments such as chemotherapy and can have prolonged curative effects to decrease cancer recurrence. Today, many drugs and biological agents have been developed that target the immune system and elicit an antitumor/cancer response. These agents are known collectively as cancer immunotherapies. While immunotherapies have radically improved treatment outcomes for many cancer patients, there are drawbacks to using these treatments. Immunotherapy treatments have poor clinical responses in patients with tumors that lack immunogenicity. Some of the treatments also pose a …

Design Of An Undergraduate Laboratory Experiment Utilizing A Stirred-Tank, Jacketed Bioreactor, Brennen Middleton

Honors Theses

Bioreactors are utilized in many industries, such as the food, alternative fuel, and pharmaceutical industries, to design and manufacture products. Unlike the similar chemical batch reactors utilized in many chemical processing facilities, bioreactor utilization requires engineers to consider a wider range of operating conditions and parameters. This results in a more complex reaction system and controls network. Due to this, it is imperative for chemical and biomedical engineering students to not only understand the theory surrounding these reactor systems, but also understand how to properly design and perform operating procedures with these systems. Thus, it was determined to create an …

3d Printable And Computational Models Of The Bone Marrow Mechanical Environment, Alexander Regner

Boise State University Theses and Dissertations

Aged individuals and astronauts experience bone loss despite rigorous physical activity. Bone mechanoresponse is in part regulated by mesenchymal stem cells (MSCs). We reported that daily low intensity vibration (LIV) restores MSC proliferation in senescence and simulated microgravity models, suggesting reduced mechanical signal delivery to MSCs likely contributes to declining bone mechanoresponse. To this end, we have developed a 3D bone marrow analog which controls trabecular geometry, marrow mechanics and external stimuli.

Finite element (FE) models of hydrogels, representing bone marrow, were generated using instantaneous compression (1000% strain/s, 20% strain) and relaxation experiments (100s) of both gelatin and hyaluronin-based hydrogels. …

Metabolic Profiling Of Radiation Resistance In Head And Neck Squamous Cell Carcinoma, Natalie Curry

Biomedical Engineering Undergraduate Honors Theses

Abstract

Head and neck squamous cell carcinoma is the sixth most common cancer worldwide. Radiation therapy is one of the most common treatments for HNSCC, however, many patients do not respond to radiation therapy. Currently, it takes about a month for clinicians to definitively determine whether a tumor is responsive to radiation therapy. Current studies have identified that the prevention of mitochondrial oxidative stress caused by reactive oxygen species can prevent DNA damage and lead to a decrease in apoptosis in radiation resistant cells Measuring the oxygen consumption rate through Seahorse metabolic assays allows us to quantify basal respiration, maximal …

The Linear And Non-Linear Relationships Between Peripheral Venous Pressure, Arterial Circulation, And Patient Factors, Lauren Crimmins

Biomedical Engineering Undergraduate Honors Theses

Peripheral venous pressure (PVP) can be used to measure blood volume status with a minimally invasive procedure. The pediatric cohort undergoing surgery for pyloric stenosis was studied to determine how arterial circulation and patient factors linearly impact PVP. The relationship between PVP and these confounding factors can provide valuable information for future PVP researchers.

To investigate the linear relationship between PVP and electrocardiogram (ECG) the waveforms were transformed into the frequency domain. A power spectral density was plotted, and the Pearson correlation coefficients were calculated for both preoperative and intraoperative settings. Linear regression models were computed for PVP and varying …

Static Force Analysis Of A Porcine Mitral Valve To Determine Self-Supporting Capabilities Of The Leaflets, Jacob Paris

Biomedical Engineering Undergraduate Honors Theses

The mitral valve (MV) is responsible for controlling the flow between the left atrium (LA) and left ventricle (LV). This includes maintaining valve closure under high systolic pressures. Mitral regurgitation (MR) occurs when the valve fails to completely close and blood flows in the reverse direction, from the LV to the LA, during ejection. This type of valvular heart disease is prevalent among elderly individuals and is becoming increasingly common as the population ages. In order to better understand how to properly treat this large group of affected individuals, the mechanics of the MV during high systolic pressures must be …

Isomotive Dielectrophoresis For Enhanced Analyses Of Cell Subpopulations., Mohamed Zakarya Rashed

Electronic Theses and Dissertations

As the relentless dream of creating a true lab-on-a-chip device is closer to realization than ever before, which will be enabled through efficient and reliable sample characterization systems. Dielectrophoresis (DEP) is a term used to describe the motion of dielectric particles/ cells, by means of a non-uniform electric field (AC or DC). Cells of different dielectric properties (i.e., size, interior properties, and membrane properties) will act differently under the influence of dielectrophoretic force. Therefore, DEP can be used as a powerful, robust, and flexible tool for cellular manipulation, separation, characterization, and patterning. However, most recent DEP applications focus on …

Development Of Quantitative Ultrasound-Mediated Molecular Imaging Of The Tumor Microenvironment, Trevor Mitcham

Dissertations and Theses (Open Access)

While conventional diagnostic imaging modalities provide anatomical information to clinicians, these techniques are not sensitive to critical physiological processes. In order to properly classify cancer, it is necessary to investigate noninvasive methods which can provide insight into these processes, allowing clinicians to determine personalized therapeutic options. Therefore, molecular imaging is focused on visualization and characterization of biomarkers within the tumor microenvironment (TME), which can then be combined with the anatomical information provided from diagnostic imaging.

Two such biomarkers of interest are blood oxygen saturation (SO₂) and cell receptor expression. SO₂ is a measure of the fraction of …

Improving The Efficacy Of Epinephrine Delivery For Anaphylaxis Through Development Of A Novel Auto-Injector Device And Increased User Education, Jennifer Ansley Myers

Honors Theses

Anaphylaxis is a life-threatening condition caused by the body’s overreaction to a certain allergen. The most widely accepted treatment for this condition is immediate administration of epinephrine, a hormone secreted by the adrenal glands that initiates the body’s fight or flight response, through an intramuscular injection. In most cases, patients that experience anaphylaxis are prescribed an epinephrine auto-injector to carry with them at all times which contains a single dose of epinephrine. Though these devices have been widely accepted for many years, there are many problems caused by their design and the lack of training that their users receive. The …

Peptoid-Functionalized Gold Nanoparticles For Zika Virus Envelope Protein Detection, Meagan Olsen

Chemical Engineering Undergraduate Honors Theses

Detection and identification of viral pathogens is essential in providing effective and rapid medical treatment. Well-established detection methods can be expensive, slow, and sometimes unable to provide the needed sensitivity and specificity. The Zika virus is one clinically relevant pathogen that cannot be easily identified due to cross-reactivity with other viruses from the same family. Electrochemical sensors enhanced with peptoid-functionalized gold nanoparticles (AuNPs) are an alternative to traditional techniques that offers rapid, accurate, label-free pathogen detection for point-of-care diagnostics. To this end, a peptoid capable of binding to the Zika virus envelope protein was developed and its binding affinity for …

Promotion Of Human Schwann Cell Proliferation Using Heparin/Collagen Coated Nerve Conduits, John Magness

Chemical Engineering Undergraduate Honors Theses

Often in the aftermath of an injury or surgery, the sense of touch and muscle control is lost in the affected area as nerves are damaged or severed and fail to grow back completely. The regeneration of the nerve cells can be promoted by treating the nerves with nerve conduits. Nerve conduits are hollow cylinders of bio-compatible materials that can be surgically implanted to the disconnected nerve to promote and direct the growth of nerves. The objectives of this research are to investigate the ability of nerve conduits treated with layer-by-layer coatings to promote the growth of Schwann cells, to …

Development Of An Integrated Salt Cartridge-Reverse Electrodialysis (Red) Device To Increase Electrolyte Concentrations Of Human Blood Flow To Power Biomedical Devices, Caroline Campbell

Chemical Engineering Undergraduate Honors Theses

Emerging technologies in nanotechnology and biomedical sciences have led to an increase in biomedical implantable devices including cardiac pacemakers, artificial organs, drug pumps, and sensors. These devices require continuous stable and reliable power to operate, which creates the demand for the need to find a safe, reliable, and stable power source. A promising avenue for a power source for these devices is a miniaturized reverse electrodialysis (RED) biopower cell design that utilizes the salinity differences between bloodstreams that flow inside the human body. Initial results of the RED system demonstrate that higher gradient salinity differences between streams lead to a …

Analyzing The Effects Of E-Hook Peptides On Kinesin-1, Ashton Ward Murrah, Baylee Hope Howard

Honors Theses

Cancer is the second leading cause of death in the United States. Cancerous growth is a result of oncogenes, or mutated genes that increase the rate of cell division in an uncontrolled manner. Cell division, which consists of mitosis and cytokinesis phases, is dependent upon the active movement of kinesin motor proteins along microtubules to rearrange the cytoskeleton for equitable distribution of genetic material to daughter cells. As kinesins are vital to this process, if we could prevent kinesin from binding to the microtubules, cell division would cease.

The goal of this study is to develop a method to prevent …

Molecular Mechanisms Of Oxidative Stress On Molecular Motors, Addison Caspari-Linhardt

Honors Theses

Astronauts encounter many forms of ionizing radiation during space travel. Ionizing radiation has been seen to cause cancer, cataracts, radiation sickness, tissue damage, hereditary effects, and damage to the central nervous system. Ionizing radiation can damage DNA molecules through oxidation, as well as other vital proteins like molecular motors. Kinesin-1 is a molecular motor protein that essential to intracellular transport. Microtubules serve as the “roadway” for kinesin transport, where kinesin converts chemical energy from ATP hydrolysis into mechanochemical “steps” to move along the microtubules. Optical trapping has been used in previous research to measure single kinesin motor properties. We have …

A Comparative Study To Assess The Osteogenic Potential Of Competing Bioceramics For Bone Tissue Engineering, Nashaita Patrawalla

Theses and Dissertations

Biomimetic composite scaffolds comprising of bioactive ceramic-based materials incorporated within a polymeric framework have shown considerable promise for use in bone tissue engineering (BTE) applications. Although bioceramics have shown immense promise for use in BTE, few studies have performed a head-to-head comparison of the osteogenic properties of the most promising bioceramic materials. The goal of this study was to compare three different bioceramics – Bioglass 45S5 (BG), Laponite XLG (LAP), and β-Tricalcium Phosphate (TCP) – on the physical properties (i.e., swelling, stability, compressive modulus, bone bioactivity) of methacrylated collagen (CMA) hydrogels and osteogenic differentiation of human MSCs (hMSCs) encapsulated within …

Validation Of Arterial Distensibility Neural Network Model With Clinical Data, Cassondra Michelle Petersen

Theses and Dissertations

Cardiovascular diseases continue to plague the world as the number one killer of adults each year. As cardiovascular diseases can start with seemingly no symptoms, heart disease has been coined as the silent killer. With the ongoing COVID-19 global pandemic, the need for advances in cardiovascular advances has become even more prevalent as this virus is known to cause more severe damage to those who have underlying cardiovascular problems. These two reasons show the dire clinical need for researchers to continue to use novel techniques such as neural networks to find new approaches for helping physicians non-invasively and quickly add …

Cardiovascular Intelligence: Novel Quantitative Cardiology, Deep Learning And Machine Learning Models To Predict Clinical Outcomes, Vignesh Balasubramanian

Theses and Dissertations

Arterial compliance has been recognized as a critical parameter in governing pulsatile flow dynamics. It has traditionally been assumed constant throughout the cardiac cycle. Its computation has been based either on the classic Windkessel model in diastole or the stroke volume over pulse pressure method in systole. We proposed a novel compliance-pressure loop (CPP loop) approach to quantify arterial compliance and compare it to existing linear and nonlinear methods. This was followed by an analysis of increased pulse wave reflections in hypertension due to impedance mismatching and how the effective energy transmission to the vasculature is compromised. Their quantification in …

Cfd Analysis Of Acoustofluidic Channels And The Effects On Biologic Delivery., Zachary T. Long

Electronic Theses and Dissertations

T-cell transformation is an ever-expanding treatment for several types of cancer, with a potential to be adapted to other disorders in which the immune system plays a key role in the pathophysiology. Currently, all FDA approved chimeric antigen receptor (CAR) T-cell cancer therapies rely on transformation via viral transduction. However, viral transduction is plagued by poor consistency and the potential to create adverse immune reactions when T-cells are reintroduced into a patient. Other transformation methods are being explored, with an alternative called acoustofluidic sonoporation showing promise. In these procedures, cells are passed through a channel, of the millimeter scale, while …

Machine Learning Approaches For Lung Cancer Diagnosis., Ahmed Mahmoud Ahmed Shaffie

Electronic Theses and Dissertations

The enormity of changes and development in the field of medical imaging technology is hard to fathom, as it does not just represent the technique and process of constructing visual representations of the body from inside for medical analysis and to reveal the internal structure of different organs under the skin, but also it provides a noninvasive way for diagnosis of various disease and suggest an efficient ways to treat them. While data surrounding all of our lives are stored and collected to be ready for analysis by data scientists, medical images are considered a rich source that could provide …

Biomethanation And Alkaline Wet Air Oxidation Of Water Hyacinth (Pontederia Crassipes) From Ozama River, Dominican Republic, Yessica A. Castro

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Obtaining valuable products from environmental remediation waste is a sustainable approach that contributes to the ecological well-being of developing countries. In the present work, the feasibility of the water hyacinth anaerobic digestion as a post-weed management practice in the Ozama River (Dominican Republic) was demonstrated. The estimated energy required for harvesting was lower than that produced during digestion. The biomethanation of water hyacinth was improved by Alkaline Wet Air Oxidation (AWAO), a thermochemical pretreatment process that almost doubled the methane production rate and increased the yield by 24% when conducted at high temperatures. At lower temperatures, the methane yield of …

Healthy Aging In Place: An Integrated Smart Home Using Alexa-Compatible Technology, Tyler Kryst

UNLV Theses, Dissertations, Professional Papers, and Capstones

The purpose of this research was to address current healthcare concerns among the aging population. Around the globe, the average life expectancy is projected to continue increasing resulting in a higher prevalence of age-related disease. With the ever-increasing capabilities of modern technology, it is necessary to apply this technology to increase the health and safety of older adults. This work had three objectives. The first objective was the establishment of an integrated smart home aimed at creating a healthy aging-in-place environment through the use of Alexa. The second objective was the development and integration of a completely custom health device …