Biomedical Engineering and Bioengineering Commons^™

Involvement Of Mixed Lineage Leukemia And Homeobox Proteins In Dna Damage Recognition And Repair, Somdutta Chakraborty

Bioengineering Theses - Archive

Deoxyribonucleic Acid (DNA) molecules are informational molecules, encoding genetic information which is indispensable in the development and functioning of living organisms. DNA encodes for most proteins essential for all bodily functions and a few of which are known to be involved in the DNA Damage Response/ Repair mechanism. DNA damage recognition and repair is crucial and the cell has an innate mechanism of repairing it. Unrepaired DNA damage leads to genetic mutation or even cancers, which are sustained by further cell division and genetic multiplication. Other researchers have already confirmed the involvement of several proteins and histones like PARP and …

Evaluation Of Tissue Response From The Regenerative Multielectrode Array (Remi) Implant Using Atf-3 And Cjun, Sarita Bhetawal

Bioengineering Theses - Archive

Currently available peripheral nerve regenerative interfaces such as the sieve and the micro-channel regenerative electrode, intended to be used for the control and natural feel from advanced robotic prosthetic devices, eventually fail due to nerve damage due to axonopathy. The Regenerative Multi-electrode array (REMI) developed in our lab overcomes this limitation by providing a non-obstructive pathway for regenerating axons. However, it is possible that the mismatch at the electrode-tissue interface may cause axonal injury during limb stretching. In order to determine if micro-motion at the REMI causes neuronal injury I evaluated the nuclear expression of Activating Transcription Factor 3 (ATF-3), …

Surface Modification Of Magnetic Nanoparticles For Formulation Of Photoluminescent Polymer-Coated Magnetic Nanoparticles To Detect And Treat Cancers, Tejaswi Dhanpal Kadapure

Bioengineering Theses - Archive

Cancer has been one of the leading causes of death worldwide that necessitates the development of theranostic systems for effective cancer management. Previously, we developed biodegradable-photoluminescent polymer coated magnetic nanoparticles (BPLP-MNPs) as a theranostic system for cancer management. These BPLP-MNPs were highly stable with excellent biocompatibility and consisted of magnetic targeting and imaging capabilities. However, these particles experienced reduced fluorescence due to the presence of dark/blackness of MNPs, which absorbs excited/emitted light. Therefore, it was hypothesized that surface modification on MNPs can overcome this limitation and enhance fluorescence for BPLP-MNPs.The goal of this research was therefore to employ various surface …

Fast Stochastic Wiener Filter For Super-Resolution Image Restoration With Information Theoretic Visual Quality Assessment, Amr Hussein Yousef, Jiang Li, Mohammad Karim, Mark Allen Neifeld (Ed.), Amit Ashok (Ed.)

Electrical & Computer Engineering Faculty Publications

Super-resolution (SR) refers to reconstructing a single high resolution (HR) image from a set of subsampled, blurred and noisy low resolution (LR) images. The reconstructed image suffers from degradations such as blur, aliasing, photo-detector noise and registration and fusion error. Wiener filter can be used to remove artifacts and enhance the visual quality of the reconstructed images. In this paper, we introduce a new fast stochastic Wiener filter for SR reconstruction and restoration that can be implemented efficiently in the frequency domain. Our derivation depends on the continuous-discrete-continuous (CDC) model that represents most of the degradations encountered during the image-gathering …

Complete Genome Sequence Of Clostridium Clariflavum Dsm 19732, Javier A. Izquierdo, Lynne Goodwin, Karen W. Davenport, Hazuki Teshima

Dartmouth Scholarship

Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009). This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose. Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

A Novel In-House Design Of A Bioreactor For The Modeling Of An In Vitro Blood Brain Barrier Model, Ian Mahaffey

Biomedical Engineering

The blood brain barrier is the protector of the central nervous system and a physical barrier that functions to regulate the substances that can pass in and out of the brain; it is the function and integrity of this system that keeps the homeostasis of the central nervous system. Yet this shield against foreign invaders in the blood also prevents drugs designed for treatment of various ailments of the central nervous system from reaching their target in the brain. Developing drugs that can pass through this barrier, and understanding it’s function has become an area of increasing interest. Many researchers …

Alternating Current Dielectrophoretic Manipulation Of Erythrocytes In Medical Microdevice Technology, Kaela M. Leonard

Dissertations, Master's Theses and Master's Reports - Open

Medical microdevices have gained popularity in the past few decades because they allow the medical laboratory to be taken out into the field and for disease diagnostics to happen with a smaller sample volume, at a lower cost and much faster. Blood is the human body's most readily available and informative diagnostic fluid because of the wealth of information it provides about the body's general health including enzymatic, proteomic and immunological states. The purpose of this project is to optimize operating conditions and study ABO-Rh erythrocytes dielectrophoretic responses to alternating current electric signals. The end goal of this project is …

Optimization Of Wsu Total Ankle Replacement Systems, Bradley Jay Elliott

Browse all Theses and Dissertations

Total ankle arthroplasty (TAR) is performed in order to reduce the pain and loss of ambulation in patients with various forms of arthritis and trauma. Although replacement devices fail by a number of mechanisms, wear in the polyethylene liner constitutes one of the dominating failure modes. This leads to instability and loosening of the implant. Mechanisms that contribute to wear in the liners are high contact and subsurface stresses that break down the material over time. Therefore, it is important to understand the gait that generates these stresses. Methods to characterize and decrease wear in Ohio TARs have been performed …

Predicting Success Or Failure Of Immunotherapy For Cancer: Insights From A Clinically Applicable Mathematical Model, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Publications

The objective of this study was to create a clinically applicable mathematical model of immunotherapy for cancer and use it to explore differences between successful and unsuccessful treatment scenarios. The simplified predator-prey model includes four lumped parameters: tumor growth rate, g; immune cell killing efficiency, k; immune cell signaling factor, λ; and immune cell half-life decay, μ. The predator-prey equations as functions of time, t, for normalized tumor cell numbers, y, (the prey) and immunocyte numbers, x, (the predators) are: dy/dt = gy – kx and dx/dt = λxy – μx. A parameter estimation procedure that capitalizes on available clinical …

Optimizing Electrode Placement For Hemodynamic Benefit In Cardiac Resynchronization Therapy, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Publications

Background: Research is needed to explore the relative benefits of alternative electrode placements in biventricular and left ventricular pacing for heart failure with left bundle branch block (LBBB). Methods: A fast computational model of the left ventricle, running on an ordinary laptop computer, was created to simulate the spread of electrical activation over the myocardial surface, together with the resulting electrocardiogram, segmental wall motion, stroke volume, and ejection fraction in the presence of varying degrees of mitral regurgitation. Arbitrary zones of scar and blocked electrical conduction could be modeled. Results: Simulations showed there are both sweet spots and poor spots …

Techniques For Sensor-Integrated Robotic Systems: Raman Spectra Analysis, Image Guidance, And Kinematic Calibration, Luke Anthony Reisner

Wayne State University Dissertations

Robotics and sensor technology have made impressive advancements over the years. There are now robotic systems that help perform surgeries or explore the surface of Mars, and there are sensors that detect trace amounts of explosives or identify diseased human tissue. The most powerful systems integrate robots and sensors, which are natural complements to each other. Sensors can provide information that might otherwise be unavailable due to indirect robotic manipulation (e.g., images of the target environment), and robots can provide suitably precise positioning of an analytical sensor.

To have an effective sensor-integrated robotic system, multiple capabilities are needed in the …

A Preliminary Study On The Potential Of Manuka Honey And Platelet-Rich Plasma In Wound Healing, Scott A. Sell, Patricia S. Wolfe, Andrew J. Spence, Isaac A. Rodriguez, Jennifer M. Mccoll, Rebecca L. Petrella, Koyal Garg, Jeffery J. Ericksen, Gary L. Bowlin

Ellmer School of Nursing Faculty Publications

Aim. The purpose of this study was to determine the in vitro response of cells critical to the wound healing process in culture media supplemented with a lyophilized preparation rich in growth factors (PRGF) and Manuka honey. Materials and Methods. This study utilized cell culture media supplemented with PRGF, as well as whole Manuka honey and the medical-grade Medihoney (MH), a Manuka honey product. The response of human fibroblasts (hDF), macrophages, and endothelial cells (hPMEC) was evaluated, with respect to cell proliferation, chemotaxis, collagen matrix production, and angiogenic potential, when subjected to culture with media containing PRGF, MH, Manuka honey, …

Methamphetamine Administration Targets Multiple Immune Subsets And Induces Phenotypic Alterations Suggestive Of Immunosuppression., Robert Z. Harms, Brenda M. Morsey, Craig W. Boyer, Howard S. Fox, Nora E. Sarvetnick

Journal Articles: Regenerative Medicine

Methamphetamine (Meth) is a widely abused stimulant and its users are at increased risk for multiple infectious diseases. To determine the impact of meth on the immune system, we utilized a murine model that simulates the process of meth consumption in a typical addict. Our phenotypic analysis of leukocytes from this dose escalation model revealed that meth affected key immune subsets. Meth administration led to a decrease in abundance of natural killer (NK) cells and the remaining NK cells possessed a phenotype suggesting reduced responsiveness. Dendritic cells (DCs) and Gr-1(high) monocytes/macrophages were also decreased in abundance while Gr-1(low) monocytes/macrophages appear …

The Role Of Amp-Activated Protein Kinase (Ampk) In Hypoxic Chemotransduction By The Carotid Body, Heidi Lynn Jordan

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The carotid bodies are small sensory organs located along the bifurcation of the carotid arteries. They detect changes in blood gases and relay this information to the brain to allow for initiation of appropriate respiratory and cardiovascular responses. A decrease in oxygen (hypoxia) sensed by the carotid body results in an increase in firing of the carotid sinus nerve and ultimately a change in one's breathing pattern. An inability to respond to an acute hypoxic (low oxygen) episode via increased ventilation may result in death or lead to pathological or chronic conditions such as stroke and hypertension (Prabhakar et.al., 2005). …

The Role Of Angiotensin Converting Enzyme (Ace) 2 In A Murine Model Of Insulin Resistance And Albuminuria, Nathan Michael Weir

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Insulin resistance and kidney disease are intimately linked and both independently tied to dysregulation of the renin angiotensin system (RAS). The purpose of this research was to better investigate Angiotensin Converting Enzyme (ACE) 2 as a possible motif in the pathophysiology of these two disease processes. The project was divided into two parts. Part 1 investigated ACE2 KO mice as a model of albuminuria. Part 2 investigated how the lack of ACE2 enzyme affected glucose homeostasis and subsequent albuminuria.

Part 1: The Role of ACE2 in the Progression of Albuminuria. To determine if global loss of ACE2 leads to spontaneous …

'Omic' Evaluation Of The Region Specific Changes Induced By Non-Cholinergic Diisopropylfluorophosphate (Dfp) Exposure In Fischer 344 Rat Brain, Deirdre A. Mahle

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Organophosphorous compounds (OPs) are a class of serine esterase inhibitors that have widespread application as pesticides, veterinary pharmaceuticals and chemical warfare agents. Environmental contamination is ubiquitous. The threat of exposure is a concern for both military and civilian populations. Acute inhibition of acetylcholinesterase by OPs triggers a cholinergic crisis that results in muscle flaccidity, paralysis, convulsions and death. At low doses OPs can alter neuronal differentiation, cell signaling, behavior and cognition through unknown mechanisms. An imbalance of reactive oxygen species may be implicated in the adverse effects of OPs. An integrated approach using both metabolomic and transcriptomic techniques was used …

Limitations Of Functional Recovery Of Stretch Reflex Circuitry After Peripheral Nerve Regeneration, Gabrielle Marie Horstman

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Peripheral nerve regeneration fails to restore complete normal function after surgical repair of severed nerves, and this failure has primarily been attributed to errors in connecting with peripheral targets. However, recent evidence suggests that central deficits remain even after peripheral target reinnervation is largely successful. It has long been established that regeneration fails to restore the stretch reflex despite observation that many of the neural components are intact. Regenerated Ia afferents are largely successful in reinnervating muscle spindles, are capable of encoding stretch, and elicit EPSPs in homonymous motoneurons, while regenerated motor pools are capable of responding to uninjured sources …

System Optimization And Patient Translational Motion Correction For Reduction Of Artifacts In A Fan-Beam Ct Scanner, Zachary Gordon Lee Wise

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In computed tomography (CT) systems, many different artifacts may be present in the reconstructed image. These artifacts can greatly reduce image quality. For our laboratory prototype CT system, a fan-beam/cone-beam focal high-resolution computed tomography (fHRCT) scanner, the major artifacts that affect image quality are distortions due to errors in the reconstruction algorithm's geometric parameters, ring artifacts caused by uncalibrated detectors, cupping and streaking created by beam hardening, and patient-based motion artifacts. Optimization of the system was required to reduce the effects of the first three artifact types, and an algorithm for correction of translational motion was developed for the last. …

Evaluation Of Interpolation And Registration Techniques In Magnetic Resonance Image For Orthogonal Plane Super Resolution Reconstruction, Amir Pasha Mahmoudzadeh

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Super resolution reconstruction (SRR) combines several perspectives of an image (typically low resolution) in order to reconstruct a more complete and comprehensive (higher resolution) image. The aim is to use this concept on magnetic resonance imaging (MRI) data, for which the standard is to scan in several-plane orientation in a 2D fashion. As a result, clinical MRI, functional MRI (FMRI), diffusion weighted imaging (DWI)/diffusion tensor imaging (DTI), and MR angiography (MRA) tend to have high in- plane resolution but low resolution in the slice-select direction. By combining the 2 scans of the orthogonal plane, new 3D images can be reconstructed. …

The Role Of Ca2+ In Central Respiratory Control Neurons Of The Locus Coeruleus: Development Of The Chemosensitive Brake, Ann Nicole Imber

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Chemosensitive LC neurons increase their firing rate in response to increased CO₂ (hypercapnia) in part via inhibition of K⁺ channels. This increase gets smaller during the first two postnatal weeks (neonatal rats aged P3-P16). Alterations of this "accelerating" pathway may account for the developmental changes in the magnitude of the chemosensitive response in LC neurons. Alternatively, Ca²⁺ and Ca²⁺ channels may play a role in the response to hypercapnia, but little is known about the role of Ca²⁺ in central chemosensitivity. Whole cell patch clamp and fluorescence imaging microscopy were used to study a different …

A Mechanism-Based Model To Describe Gabaa Receptor Trafficking And Benzodiazepine Pharmacoresistance During Status Epilepticus, Elaine Alice Merrill

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Status epilepticus (SE) is a perplexing pathology involving a sudden and long disruption of the brain's normal electrical activity. The study of relevant cellular processes has been useful in identifying therapeutic targets. As a result, many novel drugs are being studied which target receptor systems involved in neuronal membrane excitability. Yet, the standard treatment for SE remains benzodiazepines (BZs), a class of GABAA agonist drugs. Unfortunately, the targeted receptors undergo a desensitization mechanism via enhanced endocytosis (receptor trafficking), leading to rapidly reduced BZ efficacy (pharmacoresistance) within minutes of seizure onset. A comprehensive understanding of the complex interplay between the anticonvulsant's …

Regulation Of The Dna Unwinding Element Binding Protein Due-B In The Cell, Yanzhe Gao

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Eukaryotic cells have evolved tightly controlled processes that make sure the entire genome gets replicated accurately, once per cell cycle. This tight control is fulfilled by degrading replication proteins after their function is carried out, changing their cellular location or by post-translational modification of replication factors to regulate their function. Phosphorylation events carried out by CDKs (cyclin dependent kinases) and DDKs (Dbf4 dependent kinases) play crucial roles in this regulation.

The DNA unwinding element binding protein (DUE-B) is an essential replication protein that binds to the human c-myc DNA replication origin. In this study, I find that DUE-B is also …

Evaluation Of The Impact Of Surface Residue Cover On Single And Dual Crop Coefficient For Estimating Soybean Actual Evapotranspiration, Lameck O. Odhiambo, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Single and dual crop coefficient methods are used in conjunction with grass reference evapotranspiration (ET_o) to estimate actual crop evapotranspiration (ET_c). However, the impact of soil surface residue cover on the accuracy of ET_c estimated with these methods is not well understood. The objective of this study is to evaluate and compare the accuracy of the FAO-56 single crop coefficient (single-K_c) and dual crop coefficient (dual-K_c) methods for estimating soybean [Glycine max (L.) Merr.] ET_c in a partially residue covered field. The study was conducted …

Carbon, Water, And Heat Flux Responses To Experimental Burning And Drought In A Tallgrass Prairie, Marc L. Fischer, M S. Torn, David P. Billesbach, Geoffrey Doyle, Brian Northup, Sebastien C. Biraud

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Drought and fire are common disturbances to grassland ecosystems. We report two years of eddy covariance ecosystem–atmosphere fluxes and biometric variables measured in nearby burned and unburned pastures in the US Southern Great Plains. Over the course of the experiment, annual precipitation (∼600 mm yr⁻¹) was lower than the long term mean (∼860 mm yr⁻¹). Soil moisture decreased from productive conditions in March 2005 dry, unproductive conditions during the growing season starting in March 2006. Just prior to the burn in early March 2005, burned and unburned pastures contained 520 ± 60 and 360 ± 40 …

Regeneration Of Electrospun Bioresorbable Vascular Grafts: A Phenomenon Associated With Vascular Graft Properties And Macrophage Phenotypes (M1/M2), Koyal Garg

Theses and Dissertations

Macrophages (MФ) and mast cells are important cell types in the context of tissue remodeling and regeneration. Mast cells participate in the early stages of wound healing and modulate the acute inflammatory responses to biomaterials. Mast cells can secrete a myriad of different cytokines by the process of degranulation; the process of regulated secretion in which preformed contents stored in their granules are rapidly released by exocytosis. Some of these cytokines such as IL-4, IL-13 and TNF-α can modulate the MФ phenotype. Macrophages (MΦ) are innate immune cells, crucial for tissue homeostasis, presentation of foreign and self-antigens following infection/injury, pathogen …

Magic From Human Regenerative Technologies -- Stem Cells, John M. Ritz

STEMPS Faculty Publications

The article discusses the developments in stem cell research and development. It mentions that through tissue engineering or regenerative medicine, many diseases are finding techniques for improvement and cure. It discusses the role of stem cells in mending the human body and the ethics associated with this technology . It is mentioned that stem cells are divided in 2 types: embryonic stem cells and adult stem cells. It includes the process of cell differentiation which determines the properties and characteristics of cells. It mentions several diseases related to sports injury, spinal cord injuries, blood and heart disorders to be to …

Subsurface Phosphorus Transport And Scale Dependent Phosphorus Leaching In Alluvial Floodplains, Derek Michael Heeren

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Increased nutrient loads have resulted in several adverse impacts on surface water quality, including excessive algal growth, fish kills, and drinking water taste and odor issues across the United States and especially in the Ozark ecoregion of northeastern Oklahoma and northwestern Arkansas. Nitrogen is a concern, but phosphorus (P) is generally considered the limiting nutrient in most surface water systems. Scientists and engineers need to identify critical nutrient source areas and transport mechanisms within a catchment in order to cost effectively protect and enhance drinking water systems, recreation activities, and aquatic ecosystems. While surface runoff is considered to be the …

Chemotaxis Of Drosophila Glia With Controlled Microenvironments, Cade Beck

Dissertations and Theses

No abstract provided.

Neural Correlates Of Phantom Auditory Perception, Paul Joseph S. Deguzman

Dissertations and Theses

No abstract provided.

The Role Of Rugose, A Drosophila Akap And Loco, A Rgs Protein In Synaptogenesis And Development, Kemeh Georgina

Dissertations and Theses

No abstract provided.