Biomedical Engineering and Bioengineering Commons^™

Nonequilibrium Thermodynamics Modeling Of Coupled Biochemical Cycles In Living Cells, Yaşar Demirel

Yaşar Demirel Publications

Living cells represent open, nonequilibrium, self organizing, and dissipative systems maintained with the continuous supply of outside and inside material, energy, and information flows. The energy in the form of adenosine triphosphate is utilized in biochemical cycles, transport processes, protein synthesis, reproduction, and performing other biological work. The processes in molecular and cellular biological systems are stochastic in nature with varying spatial and time scales, and bounded with conservation laws, kinetic laws, and thermodynamic constraints, which should be taken into account by any approach for modeling biological systems. In component biology, this review focuses on the modeling of enzyme kinetics …

Quantification Of Vascular Parametric Indices Using Dynamic Contrast-Enhanced Magnetic Resonance Imaging, Areen Khaled Al.Bashir

Wayne State University Dissertations

Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a non-invasive method used to evaluate the biological activity in early clinical trials of novel drugs targeting the tumor vasculature using gadolinium-DTPA (Gd) as a contrast agent. However, it has some limitations, such as reproducibility, data acquisition times, the presence of noise, extracting contrast concentration, estimating T1 relaxation and estimating pharmacokinetic parameters.

In this work, a new approach to used fixed T1(0) which provides more reproducible DCE results has been introduced. Using this new algorithm to quantify the vascular changes in DCE-MRI, a pre-clinical renal cell carcinoma (RCC) tumor model was used to …

Theory Of ‘Selectivity’ Of Label-Free Nanobiosensors – A Geometro-Physical Perspective, Pradeep R. Nair, Muhammad A. Alam

Birck and NCN Publications

Modern label-free biosensors are generally far more sensitive and require orders of magnitude less incubation time compared to their classical counterparts. However, a more important characteristic regarding the viability of this technology for applications in Genomics/Proteomics is defined by the ‘Selectivity’, i.e., the ability to concurrently and uniquely detect multiple target biomolecules in the presence of interfering species. Currently, there is no theory of Selectivity that allows optimization of competing factors and there are few experiments to probe this problem systematically. In this article, we use the elementary considerations of surface exclusion, diffusion limited transport, and void distribution function to …

Development Of Magnetic-Based Core-Shell Nanoparticles For Drug Delivery Applications In Melanoma Skin Cancer, Zarna A. Bhavsar

Bioengineering Theses - Archive

Melanoma skin cancer is the most dangerous form of skin cancer and the major cause of deaths related to skin cancer worldwide. Conventional chemotherapeutic treatment is not very effective and faces many problems such as low response rate, development of multidrug resistance, and severe side effects. In order to address these limitations and improve melanoma treatment efficacy, development of a multifunctional nanoparticulate drug delivery system is desired. Thus, we aimed towards the development of magnetic-based core-shell nanoparticles (MBCS NPs) for dual drug release and dual targeting of melanoma tumors. The synthesized nanoparticles were composed of Poly (Lactic-co-glycolic acid) (PLGA) particle …

A Novel Injectable Porous Hydrogel Composite Scaffold For Bone Tissue Engineering, Parvathi Nair

Bioengineering Theses - Archive

Over the past decade there has been an increasing use of bone grafts for orthopedic applications. With the aging US population, the need for suitable bone grafts substitutes has also increased. The aim of this study was to develop a novel in situ crosslinkable hydrogel composite for tissue-engineering critical-sized bone defects. This system consists of a newly developed water-soluble biodegradable hydrogel Poly ((ethylene glycol) maleate citrate) (PEGMC) and hydroxyapatite (HA). The PEGMC/HA system is completely injectable and can be crosslinked in situ into crosslinked PEGMC/HA (CPEGMC/HA) hydrogel composite with or without poly (ethylene glycol) diacrylate (PEGDA) as a crosslinker. The …

Microfluidic Systems For Studying Cell Motility, Srikanth Vasudevan

Bioengineering Theses - Archive

It is very imperative to develop new in vitro platforms that can help in studying the complex interactions that occur between cell-Extracellular Matrix proteins and also during the process of cell migration in vivo. Such tools would facilitate in better understanding of the mechanisms that are employed by the cells during growth and migration. There are two devices that are presented in this study; 1) Multi-biomolecule coated lane device for unbiased cell preferential migration and 2) Novel Microchannel device for real time monitoring of tumor cell migration.The Multi-biomolecule coated lane device is a basic in vitro platform that helps in …

Electroporation-Mediated Delivery Of A Naked Dna Plasmid Expressing Vegf To The Porcine Heart Enhances Protein Expression, W. G. Marshall Jr., B. A. Boone, J. D. Burgos, S. I. Gografe, M. K. Baldwin, M. L. Danielson, M. J. Larson, D. R. Caretto, Y. Cruz, B. Ferraro, L. C. Heller, K. E. Ugen, M. J. Jaroszeski, R. Heller

Bioelectrics Publications

Gene therapy is an attractive method for the treatment of cardiovascular disease. However, using current strategies, induction of gene expression at therapeutic levels is often inefficient. In this study, we show a novel electroporation (EP) method to enhance the delivery of a plasmid expressing an angiogenic growth factor (vascular endothelial growth factor, VEGF), which is a molecule previously documented to stimulate revascularization in coronary artery disease. DNA expression plasmids were delivered in vivo to the porcine heart with or without coadministered EP to determine the potential effect of electrically mediated delivery. The results showed that plasmid delivery through EP significantly …

Digital Human Models Of People With Disabilities, Ron Hamameh

Wayne State University Theses

The current state-of-the-art in Digital Human Modeling (DHM) allows for full simulation and analysis of any task a person is required to perform at home, at work, in the military, in space, in sports, etc. The problem is that the software is missing a very important population: people with physical disabilities. What modifications and enhancements must be made to existing, commercially available DHM software to include this population?

Application Of Magnetic Resonance Imaging To Understanding The Pathogenesis Of The X-Linked Leukodystrophy Pelizaeus-Merzbacher Disease, Jeremy Jerome Laukka

Wayne State University Dissertations

Myelin is a multilamellar membrane structure surrounding axons in both the CNS and PNS that facilitates nerve conduction. In the CNS, myelin is synthesized by oligodendrocytes, while in the PNS, myelin is synthesized by Schwann cells. In the CNS, Proteolipid protein 1 (PLP1), an integral membrane protein, is the major protein component of myelin, constituting ~50% of myelin protein. Mutations of the PLP1 gene in man cause a spectrum of neurological disease, ranging from the severe Pelizaeus-Merzbacher disease (PMD), that typically begins during infancy with nystagmus, seizures and hypotonia and evolves into spastic quadriparesis, cognitive impairment and ataxia, to ¡¥pure¡¦ …

Nanivid : A New Research Tool For Tissue Microenvironment Studies, Waseem Khan Raja

Legacy Theses & Dissertations (2009 - 2024)

Metastatic tumors are heterogeneous in nature and composed of subpopulations of cells having various metastatic potentials. The time progression of a tumor creates a unique microenvironment to improve the invasion capabilities and survivability of cancer cells in different microenvironments. In the early stages of intravasation, cancer cells establish communication with other cell types through a paracrine loop and covers long distances by sensing growth factor gradients through extracellular matrices. Cellular migration both in vitro and in vivo is a complex process and to understand their motility in depth, sophisticated techniques are required to document and record events in real time. …

Implementation Of Risk Management In The Medical Device Industry, Rachelo Dumbrique

Master's Theses

This study looks at the implementation and effectiveness of risk management (RM) activities in the medical device industry. An online survey was distributed to medical device professionals who were asked to identify RM-related activities performed during the device life cycle. RM activities and techniques included Establishing Risk Acceptance Criteria, Hazard Identification, Human Factors/Usability, Fault Tree Analysis (FTA), Design Failure Mode and Effects Analysis (DFMEA), Process Failure Mode and Effects Analysis (PFMEA), Hazard and Operability Study (HAZOP), Hazard Analysis and Critical Control Point (HACCP), Risk Benefit Analysis, and Risk Assessment of Customer Complaint. Devices were identified by type (therapeutic, surgical/clinical tools, …

Characterizing The Controlled Release Of Glial Cell-Line Derived (Gdnf) Neurotrophic Factor From Encapsulated Schwann Cells, Kristy Broadrick

Wayne State University Theses

ABSTRACT

CHARACTERIZING THE CONTROLLED RELEASE OF GDNF IN SCHWANN CELLS

by

KRISTY BROADRICK

May 2010

Advisor: Dr. Pamela VandeVord

Major: Biomedical Engineering

Degree: Masters of Science

Controlled expression of glial cell line derived neurotrophic factor (GDNF) can be integrated in the development of a system for repair of injured peripheral nerves. This delivery strategy was demonstrated via inducible GDNF from microencapsulated cells in barium alginate. The Schwann cell line RT4-D6P2T was initially modified utilizing an ecdysone-based stable transfection system to produce RT4-GDNF cells. During construct preparation, it was found that C6 cells (where GDNF cDNA was isolated) make three GDNF …

The Acute And Sub-Acute Effects Of Electrosurgical And Ultrasonic Surgical Devices On The Neurophysiologic Changes Of Sciatic Nerve Function, Anuja Gopalkrishna Vedpathak

Wayne State University Theses

THE ACUTE AND SUB-ACUTE EFFECTS OF ELECTROSURGICAL AND ULTRASONIC SURGICAL DEVICES ON THE NEUROPHYSIOLOGIC CHANGES OF SCIATIC NERVE FUNCTION

Since the dawn of medicine, blood loss during surgeries has been one of the major concerns for the surgeons. Iatrogenic blood loss can have several harmful effects on the patient condition. With the rapid development in technology, the blood loss can now be significantly minimized by using a variety of vessel sealing devices that use several energy sources to seal the blood vessels or tissue bundles instead of traditional sutures and clips. These devices can be used in several general, colorectal, …

The Effect Of Abductor Muscle And Anterior-Posterior Hip Contact Load Simulation On The In-Vitro Primary Stability Of A Cementless Hip Stem, Youngbae Park, Carolyne Albert, Yong-San Yoon, Göran Fernlund, Hanspeter Frei, Thomas R. Oxland

Biomedical Engineering Faculty Research and Publications

Background

In-vitro mechanical tests are commonly performed to assess pre-clinically the effect of implant design on the stability of hip endoprostheses. There is no standard protocol for these tests, and the forces applied vary between studies. This study examines the effect of the abductor force with and without application of the anterior-posterior hip contact force in the in-vitro assessment of cementless hip implant stability.

Methods

Cementless stems (VerSys Fiber Metal) were implanted in twelve composite femurs which were divided into two groups: group 1 (N = 6) was loaded with the hip contact force only, whereas group 2 (N = …

A Biomechanical Comparison Of Locking Compression Plate Constructs With Plugs/Screws In Osteoporotic Bone Model, Krishna P. Desai

Browse all Theses and Dissertations

Locking compression plates are proven to be safe for use in open reduction and internal fixation (ORIF) especially in osteoporotic bones. Because of various combinations of holes, the system provides more options for clinicians to use either locking screws or non-locking screws. This clinical research introduces screw like plugs which can be used along with the screws in case of locking compression plates. Experimental work was performed to determine the effectiveness of the plugs. The results showed that there is not a significant difference between the groups which used plugs and did not use the plugs, both in case of …

An Analytical Model For Rotator Cuff Repairs, A. Aurora, Jorge E. Gatica, Antonie J. Van Den Bogert, J. A. Mccarron, Kathleen A. Derwin

Mechanical Engineering Faculty Publications

Background

Currently, natural and synthetic scaffolds are being explored as augmentation devices for rotator cuff repair. When used in this manner, these devices are believed to offer some degree of load sharing; however, no studies have quantified this effect. Furthermore, the manner in which loads on an augmented rotator cuff repair are distributed among the various components of the repair is not known, nor is the relative biomechanical importance of each component. The objectives of this study are to (1) develop quasi-static analytical models of simplified rotator cuff repairs, (2) validate the models, and (3) predict the degree of load …

Correlating The Magnitude And Spatial Gradient Of Alternans, Stuart Traxel

University of Kentucky Master's Theses

Electrical restitution has been shown to inaccurately predict the occurrence of alternans of action potential duration. A new method using the spatial gradient of alternans (SGA) is proposed to predict alternans and cardiac electrical stability. A simulated 1-D strand of tissue was used to compare indexes computed from restitution methods and the SGA method to changes in the amplitude of alternans using different electro-physiological alterations. The SGA method correlated better with changes in the amplitude of alternans than restitution methods for a decrease in the transient outward current (I_to) and conduction velocity. Restitution methods correlated better with changes …

Bioelectric Applications For Treatment Of Melanoma, Stephen J. Beebe, Karl H. Schoenbach, Richard Heller

Bioelectrics Publications

Two new cancer therapies apply bioelectric principles. These methods target tumor structures locally and function by applying millisecond electric fields to deliver plasmid DNA encoding cytokines using electrogene transfer (EGT) or by applying rapid rise-time nanosecond pulsed electric fields (nsPEFs). EGT has been used to locally deliver cytokines such as IL-12 to activate an immune response, resulting in bystander effects. NsPEFs locally induce apoptosis-like effects and affect vascular networks, both promoting tumor demise and restoration of normal vascular homeostasis. EGT with IL-12 is in melanoma clinical trials and nsPEFs are used in models with B16F10 melanoma in vitro and in …

Frustrated Drift Of An Anchored Scroll-Wave Filament And The Geodesic Principle, Marcel Wellner, Christian W. Zemlin, Arkady M. Pertsov

Bioelectrics Publications

We investigate anchored scroll-wave filaments in an excitable medium whose diffusivity matrix, including its determinant, is spatially nonuniform. The study is motivated by cardiological applications where scroll-wave behavior in the presence of diffusivity gradients is believed to play an important role in the development of severe arrhythmias. A diffusivity gradient is expected to make the filament drift, unless drift is prevented ("frustrated") by anchoring to localized defects in the propagation medium. The resulting stationary filament is a geodesic curve, as demonstrated here in the case of a nonzero but constant gradient. That is, the diffusivity matrix has a determinant that …

Incorporation Of Vascular Endothelial Growth Factor And Pleiotrophin Into A Multiluminal Biosynthetic Nerve Implant For The Repair Of Peripheral Nerve Long Gap Defects, An Hai Nguyen

Bioengineering Theses - Archive

To repair a fully transected nerve without putting undue tension on the nerve stumps, and too circumvent many of the obvious problems of using harvested nerve grafts synthetic nerve guides have been used in the clinical setting. Thus far this strategy has met with minimal success for the repair of short defects (i.e. 1 - 2.5 cm) while any defect larger than 3 cm have failed. We hypothesize that neurotorphic support, early vascularization, and contact guidance are needed to successfully regenerate a nerve across a long-gap defect. To this end we proposed a biosynthetic nerve implant (BNI) with a multiluminal …

Destruction Of Α -Synuclein Based Amyloid Fibrils By A Low Temperature Plasma Jet, Erdinc Karakas, Agatha Munyanyi, Lesley Greene, Mounir Laroussi

Electrical & Computer Engineering Faculty Publications

Amyloid fibrils are ordered beta-sheet aggregates that are associated with a number of neurodegenerative diseases such as Alzheimer and Parkinson. At present, there is no cure for these progressive and debilitating diseases. Here we report initial studies that indicate that low temperature atmospheric pressure plasma can break amyloid fibrils into smaller units in vitro. The plasma was generated by the plasma pencil, a device capable of emitting a long, low temperature plasma plume/jet. This avenue of research may facilitate the development of a plasma-based medical treatment.

Mechanical And Thermodynamic Properties Of Bacteriorhodopsin Langmuir Film., Vijayandren Kuppusamy

Student Works (2010-2019)

Bacteriorhodopsin is a photoactive protein found in the purple membranes of the highly halophilic bacterium Halobacterium Salinarium. Due to highly efficient and simple in its function, Bacteriorhodopsin has been extensively researched and successfully incorporated into many practical applications. In this regard, the fabrication of compactly packed and functionally active Bacteriorhodopsin thin film is crucial in realizing a highly efficient device. The aim of this thesis is to analyze the mechanical and thermodynamic properties of the Bacteriorhodopsin-Langmuir monolayer film from the surface pressure-area per molecule isotherm to produce a compactly pact and functionally active monolayer film. For this, we have proposed …

Impaired Vascular Reactivity Following Chronic Ischemia In The Arteries Of The Mouse Hindlimb, Thomas (Tom) Kesler

Biomedical Engineering

Collateral dependent hyperemia is reduced following chronic ischemia, but the contribution of individual vessel reactivity is unknown. Further, it is not known what aspect of the complex ischemic injury response impacts vascular reactivity. To determine the impact of ischemia on vascular reactivity, we measured functional vasodilation in the muscular branch artery following resection of the femoral artery proximal to the muscular branch. On day-14 after surgery the diameter of the muscular branch was measured using side-stream dark field (SDF) imaging intravital microscopy. At moderate intensity skeletal muscle contraction (1mA, 200µs, 8Hz, 90sec), functional vasodilation is reduced compared to the contralateral …

Morphological Assessment Of Basic Multicellular Unit Resorption Parameters In Dogs Shows Additional Mechanisms Of Bisphosphonate Effects On Bone, Matthew R. Allen, Antonia M. Erickson, Xiang Wang, David B. Burr, R. Bruce Martin, Scott J. Hazelwood

Biomedical Engineering

Bisphosphonates (BPs) slow bone loss by reducing initiation of new basic multicellular units (BMUs). Whether or not BPs simply prevent osteoclasts from initiating new BMUs that resorb bone or also reduce the amount of bone they resorb at the BMU level is not clear. The goal of this study was to determine the effects of BPs on three morphological parameters of individual BMUs, resorption depth (Rs.De), area (Rs.Ar), and width (Rs.Wi). After 1 year of treatment with vehicle (VEH), alendronate (ALN; 0.10, 0.20, or 1.00 mg/kg/day), or risedronate (RIS; 0.05, 0.10, or 0.50 mg/kg/day), resorption cavity morphology was assessed in …

Impaired Vascular Reactivity Following Chronic Ischemia In The Arteries Of The Mouse Hindlimb, Trevor Cardinal, Thomas J. Kesler, Matthew D. Yocum, Tyler S. Smith, Nolan M. Mott

Biomedical Engineering

No abstract provided.

Testing Fuel Efficiency Of Tractors With Both Continuously Variable And Standard Geared Transmissions, Christopher N. Howard

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

A John Deere 8295R IVT tractor with a continuously variable transmission (CVT) and a John Deere 8295R PowerShift (PST) tractor (Waterloo, Iowa) with a standard geared transmission (GT) were tested for fuel consumption at three different travel speeds with six different load levels applied per speed. The JD 8295R PST tractor was tested both at full throttle (FT) and shifted up two gears and throttled back (SUTB) to achieve the same travel speed as at full throttle conditions. The three speeds tested corresponded to the maximum speeds achieved in 6th, 8th and 10th gear for the JD 8295R PST tractor …

Anterior-Posterior Impedance Cardiography: A New Approach To Accurate, Non-Invasive Monitoring Of Cardiac Function, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Publications

The conventional impedance cardiogram is a record of pulsatile changes in the electrical impedance of the chest with each heartbeat. The signal seems intuitively related to cardiac stroke volume. However doubts persist about the validity of stroke volume measurements based on electrical impedance. This paper presents a new electrical axis for impedance cardiography that is perpendicular to the conventional head-to-foot axis in an anterior-posterior direction. Dual chest and back electrodes are concentric, permitting tetrapolar technique. A relatively simple analytical model is developed, and this model is validated in a three-dimensional finite element model of current flow through the human chest. …

The Influence Of Hydrogen Peroxide On The Static And Fatigue Properties Of Palacos-R Bone Cement, John M. Guerin

Theses

Aseptic loosening is a very costly complication of joint arthroplasty, both in terms of patient quality of life and financially. One potential contributing factor in its development - namely the use of hydrogen peroxide as an effervescent haemostatic agent - was investigated in this study. Clean bone cement samples and samples contaminated with 6% hydrogen peroxide were manufactured and stored either in room air or normal saline prior to testing. Thus four sample types were tested (clean stored wet or dry and contaminated stored wet or dry). Static (tension to failure) and fatigue testing was performed. Analysis was carried out …

Composition-Structure-Property Relationships In Multicomponent Bioactive Glasses, Sharon Murphy

Theses

Silicate glasses function effectively as bone grafts by stimulating bone regeneration through gene activation. However these materials offer little therapeutic potential for the regeneration of healthy bone in those suffering from metabolic bone diseases such as osteoporosis. Examining the composition-structure-property relationships arising from the incorporation of therapeutic ions such as strontium (Sr) and zinc (Zn) into such glasses in order to allow for healthy bone regeneration and antibacterial efficacy, as well as sodium (Na) to allow for controlled ion release was the objective of this work. Eight calcium-strontium-sodium-zinc-silicate glass compositions were produced, based on incremental additions of Sr and Na. …

Evaluation Of Two Novel Aluminum-Free, Zinc-Based Glass Polyalkenoate Cements As Alternatives To Pmma Bone Cement For Use In Vertebroplasty And Balloon Kyphoplasty, Gladius Lewis, Mark R. Towler, Daniel Boyd, Matthew J. German, Anthony W. Wren, Owen M. Clarkin, Andrew Yates

Chemical and Biochemical Engineering Faculty Research & Creative Works

Vertebroplasty (VP) and balloon kyphoplasty (BKP) are now widely used for treating patients in whom the pain due to vertebral compression fractures is severe and has proved to be refractory to conservative treatment. These procedures involve percutaneous delivery of a bolus of an injectable bone cement either directly to the fractured vertebral body, VB (VP) or to a void created in it by an inflatable bone tamp (BKP). Thus, the cement is a vital component of both procedures. In the vast majority of VPs and BKPs, a poly(methyl methacrylate) (PMMA) bone cement is used. This material has many shortcomings, notably …