Biomedical Engineering and Bioengineering Commons^™

Development & Validation Of An Improved Biomechanical Model For Motion Analysis, Darren Dawson

Theses

Three dimensional motion analysis systems are utilised across a number of different disciplines, including clinical gait analysis, sports performance studies and analysis of tasks of daily living. These systems utilise biomechanical models which define body segment coordinate systems and calculate kinematic and kinetic relationships about the joints between adjacent coordinate systems. In this study, a biomechanical model for general use in motion analysis was developed and validated. It was designed to improve upon the accuracy and capability of currently available models. The newly developed model utilises state of the art techniques to accurately define body segment coordinate systems. Accurate predictive …

Antibacterial Efficacy Of Nanometals In Conjunction With Electrical Stimulus, Syed A. Hussain

Theses

Hospital related infections generally result from the combined effect of preexisting bacteria on the patient and invasive devices. This demonstrates the significance in improving these medical devices to increase the quality of life of the patients that require them. This study will attempt to evaluate the antibacterial efficacy of nanocopper particles and an electrical stimulus for the usage in medical device development and the hospital environment.

For devices such as catheters, infections typically result from bacteria entering the body from the outside. This is accomplished by bacteria attaching themselves to the exterior of the device and producing biofilm which allows …

Effect Of Melt Method On Thoracolumbar Connective Tissue, Faria Sanjana

Theses

Approximately, 31 million adults in the United States suffer from low back pain (LBP). Altered connective tissue structure has been identified in adults with chronic LBP. Numerous novel treatments are being developed targeting the connective tissue and nervous system to relieve people from LBP. One such self-care treatment is the MELT method. The objective of this study was to determine whether thickness of thoracolumbar connective tissue and other biomechanical and viscoelastic properties of myofascial tissue in the low back region change in subjects with chronic LBP as a result of MELT.

Using ultrasound imaging and an algorithm developed in MATLAB, …

Continuum Mechanical Analysis Of Space And Time Dependent Deformation Pattern Of Brain With Blunt Injury, Chen Miao

Theses

Deformation of human brain due to acceleration impact has been widely accepted as the direct connection to the Trauma Brain Injury (TBI). However, the limitation of obtaining deformation data of TBI is a major obstacle to understanding TBI mechanism. This experiment mainly focuses on developing a method to measure deformation pattern of brain with blunt injury. First of all, displacement data of markers on sagittal plane of an injury head model was collected using 3D reconstruction software after an impact test. Second, the displacement data was used to calculate 2D Lagrangian strain tensor and the principal strain. The temporal and …

An Electromechanical System For Characterization Of Piezoelectric Materials, Ahmet Sait Asan

Theses

Piezoelectric materials have been used in medical applications for a long time due to their unique characteristics, which is to respond to mechanical stimulation by producing an electrical current and vice versa. They perform a pivotal role in medical applications both for diagnostic and therapeutic purposes. In this regard, characterizing the piezoelectric properties of these materials is crucial for their usage. In this particular study, an electromechanical system for measurement of piezoelectric output signals is designed and tested. The project is motivated by the question: can the piezoelectric properties be characterized by applying different mechanical stimulation waveforms and frequencies. Two …

Response Of Stretch-Injured Schwann Cells, Stephanie Iring

Theses

Axon fibers are covered by myelin sheath. After axonal damage, demyelination follows with the production of debris. In the Central Nervous System many studies have been performed to observe and analyze stretch injured axons, but very little has been done to study the white matter axonal tracts, oligodendrocytes. Schwann cells can help take a first look into stretch injured glia cells from the Peripheral nervous system. In order to observe changes in Schwann Cells a stretch injury device is used to produce the effects of severe and moderate injuries. Schwann Cells are stretch injured in both their undifferentiated and differentiated …

Investigating Neural Mechanisms Of Hand Movements In Virtual Reality, Chuang Mu

Theses

Mirror visual feedback (MVF), a technique by which movement of one limb is perceived as movement of the contralateral limb, has the capacity to relieve phantom limb pain or promote motor recovery of the upper limbs after stroke (Ramachandran et al., 1995). Functional MRI studies have demonstrated activation of the motor areas in the hemisphere ipsilateral to the moving hand in response to MVF. However, the neural mechanisms of MVF are still unclear. This Electroencephalography (EEG) study was designed to investigate the timing of neural responses to MVF presented in virtual reality. 16 right-handed, neurologically healthy subjects participated in a …

A Study Of Kinematics And Kinetics In Time-Constrained Arm Movements, Oyindamola Owoeye

Theses

Several studies such as the equilibrium point hypothesis (EPH) purport that the motor signals that descend from the brain instead of encoding muscle torques, influence an existing relationship between muscle torque and body configuration.

In the present study, the possibility of torque depending explicitly on position was tested using a task in which subjects (N=5) moved a simulated weightless frictionless mass through a small (<8 degree) elbow extension in order to move a cursor on a screen to a target location. Each subject completed 720 trials. On ~10% of trials the simulated mass was increased unknown to the subject. The relationship between the cursor’s position and the torque applied to the system was held constant even when the simulated mass was increased. Thus, any change in torque produced was neither due the subjects’ perception of the mass nor due to their perception of the cursor. The time at which the subjects torque changed direction was seen to be significantly different (p<0.005) during trials which the mass changed. This change in torque is concluded to be position-dependent. However the possibility of this being a merely mechanical effect could not be ruled out by due to poor EMG collection.

A post-hoc analysis of different position-dependent motor control models, was done. Particularly, an exponential spring model, a linear spring model, and a linear spring with relative damping model were each tested to see how well …

Realization Of Dynamixel Servo Plant Parameters To Improve Admittance Control For A Compliant Human-Robot Interaction, Ahmad Zahid Rao

Theses

In theory, admittance control offers a very effective method of implementing smooth human-robot interaction. It allows the user’s applied force to control the movement of a powerful robot as if the robot were a small, passive mass. However, the real-world application of admittance control faces limitation posed by the dynamics of servo motors, the accuracy of the force sensors, and the computation speed of processors.

This research investigates the limitations on achieving compliant passive behavior when using state-of-the-art actuators, sensors and processors. The work involves characterizing the dynamic behavior of the servo motors, development of improved differential equations representing admittance …

Comparison Of Muscle Synergies Elicited From Transcranial Meganetic Stimulation (Tms) And Voluntary Movements, Yifei Wei

Theses

A key question in motor control is the redundancy of musculoskeletal elements involved. This problem refers to as the degree of freedom problem. The Muscle Synergy Hypothesis is one of the hypotheses that aim to resolve the problem which defines that a muscle synergy is a combination of a small set of muscles activated at different levels, serving as a building block that constructs motor behaviors. A recent study (Overduin et al. 2012) demonstrated that muscle synergies decomposed by Nonnegative Matrix Factorization (NMF) from EMG patterns evoked by intra-cortical microsimulation (ICMS) in the monkey remarkably matched ones observed in naturalistic …

Rodent Testing Device Surrogate For Shockwave Blast Testing, Anthony C. Misistia

Theses

Many laboratories around the world are conduct shockwave blast injury tests on rodents to simulate blast traumatic brain injury (TBI). Each of these laboratories has different techniques for creating the shockwave blasts as well as positioning the rats. There is no device to determine whether or not the rodent animal models actually experiences a true blast wave in a given set up. This device was developed as a method for verifying rodents undergoing true shockwave blasts through biometrics, instrumentation and the basic biomechanical responses a rodent experiences during such tests. Since the goal of shockwave blast testing is to replicate …

Behavior Of Deformed Dermal Fibroblasts Seeded On A Silicon Membrane Under High Levels Of Strain, Laura Osorno

Theses

The main objective of this thesis is to understand, from a molecular perspective, the morphological and functional abnormalities of human dermal fibroblasts as a response to deformation produced by a normal force that can lead to the potential formation of stretch marks in pregnant women, adolescents, and people with Cushing's syndrome. The main function of dermal fibroblasts is to produce the essential fibrous components of the extracellular matrix (ECM) of the skin.

In order to study the mechanism of stretch mark formation, neonatal human dermal fibroblasts were seeded on a silicon membrane for controlled deformation. Upon reaching a confluence of …

Differentiation Of Mouse Embryonic Stem Cells Into Insulin-Producing Cells: Optimization To Enhance The Overall Differentiation Efficiency, Xiaotang Ma

Theses

Embryonic stem cells have the potential to differentiate into multiple cell types including insulin-producing cells (IPCs), which is becoming one of the promising cell sources for treating type 1 diabetes mellitus. However, in order to achieve functional stem cell-derived cells, it is important to generate more mature IPCs and to keep long-term viability post differentiation process. In this study, we varied several factors including different embryonic body culture conditions, digested cells seeding density and various coatings required for differentiation to optimize a previously established protocol to enhance the overall differentiation efficiency. Moreover, a three-dimensional in vitro collagen tissue culture system …

Tendon Reflex Protocol For Exploring The Mechanisms Associated With Whole Body Vibration, Ikechukwu Okeke

Theses

Whole body vibration (WBV) machines have in recent years been widely used as rehabilitation equipment. Whole body vibration has been shown to have positive effects on muscle response. Cerebral palsy (CP) is a neurodevelopmental condition that includes a group of non-progressive, but often changing, motor impairment syndromes arising in the early stages of human development. The aim of this project was to design a protocol and related instruments to assess the tendon reflex in response to WBV. Both a press pedal used for measuring the force exerted by the foot and a hammer used for measuring the stimulating force were …

An Electrospinning Apparatus For The Production Of Heterogeneous Scaffolds And Their Application In Cartilage Regeneration, Andrew Ryan Hollingsworth

Theses

The human body contains a vast array of soft and hard tissues, each with their own unique set of physical, chemical, mechanical, and electrical properties. It is the combination of these tissues that allows the human body to function as it does. However, these tissues are subject to wear, fatigue, and injury and thus can potentially limit the functions of the body. Therefore, tissue engineering has sought various natural and synthetic materials that can be used for fabrication of cellular scaffolds that have the ability to promote cellular attachment, proliferation, differentiation, and eventual whole tissue formation for replacement and repair …

Visualeyes 2020: A Software Suite To Integrate Instrumentation To Study The Near Triad Of Vergence, Stephen J. Lestrange

Theses

A complete instrumentation suite has been constructed for use in a randomized clinical trial to be funded from the National Institute of Health and study the underlying potential mechanism(s) of vision therapy. This suite is designed to track rotation of each eye (vergence) as well as measure the lens power of the eye's lens (accommodation). The system is designed to dissect the near triad which is composed of the pupil constriction, vergence and accommodation. The visual targets are programmed to be shown on two sets of computer screens which allowed vergence, accommodation and proximal vergence cues to be presented in …

Fem Of Electrospinning Compared To Inkjet Printing Model, Maikel Ghaly

Theses

Electrospinning is a process that uses electrostatic forces to produce nanofibers, or fibers in the nano scale. Nanofibers are widely used in many fields like drug delivery and tissue engineering. Nowadays, it is gaining much attention in the research community as an advantageous process. However, there are many parameters that controlnanofiber formation. This research intends to develop a model of electrospinning on the basis of an inkjet printer technique by using a computer aided simulation (COMSOL). Inkjet printing is a technique that delivers small volumes at high repetitions which can betransported by electrostatic forces through the air onto their intended …

Optimizing Alginate-Chitosan Microcapsules Using Co-Axial Air Flow Method As 3d Stem Cell Microenvironment, Noel Alfonso

Theses

Microencapsulation of cells is gaining popular interest in the field of biomedical engineering because it provides a more effective 3D scaffold that can mimic the cell microenvironment. The benefits of using microcapsules are biocompatibility, biodegradability, nontoxicity, and formation under mild gelation conditions. In this study, the ability of the alginate microcapsules to control the proliferation and differentiation of mouse OCT4-GFP embryonic stem cells is investigated. Microcapsules are produced by extrusion of alginate into a calcium chloride gelation bath with the aid of a co-axial air flow. It is shown that the size of the spheres is controlled based on needle …

Evaluation Of Methods To Account For Release From Nanofiber Scaffolds, Jennifer Moy

Theses

Electrospinning is a common technique utilized to form fibers from the micro- to nanometer range. Nanofibers form through electrospinning can be utilized as scaffolds since the fiber structures are similar to the structures within the extracellular matrix. Researchers use additives, such as growth factors, to help facilitate cell proliferation and function. Also, researchers are attempting to use electrospun fibers for drug delivery and as wound dressings since the electrospun fibers have high surface area to volume ratio. In both situations, the release of either the additive or the drug needs to be controlled so that the fibers would release the …

The Effect Of Vergence Vision Training On Binocularly Normal Subjects, Henry Talasan

Theses

Vergence is the disjunctive (inward or outward) movement of the eyes that is stimulated by retinal disparity (difference of where an image is projected to the retina and the fovea). A recent randomized clinical trial showed the efficacy of vision therapy for children with the binocular dysfunction known as convergence insufficiency is 73%. However, it is unknown whether binocularly normal persons will have any significant change to their vergence ocular motor system if they participate in vision training sessions. A total of ten (n = 10) binocularly normal persons participated in this study (18 to 28 years of age). A …

Short Term Modification Of Vergence Ramp Eye Movements In The Convergent Direction, Chang Yaramothu

Theses

Prior oculomotor studies have investigated the various effects of short-term modification on vergence, saccadic and smooth pursuit eye movements. Previous vergence studies have concentrated on step modification stimuli. Few have investigated the effects of short-term modification on vergence ramp movements. Thus, this study explores the trends observed within a short-term modification experiment studying smoothly tracking vergence eye movements responses elicited from convergent ramp stimuli. A short-term modification experiment is composed of three phases: baseline, modification and recovery. Baseline and recovery phases contain only test stimuli; whereas, during modification, the subject is presented test and conditioning stimuli in a ratio of …

Differentiating Schizophrenic Patients From Healthy Control; Application Of Machine Learning To Resting State Fmri, Hossein Ebrahimi Nezhad

Theses

In recent years, one analysis approach that has grown in popularity is the use of machine learning algorithms to train classifiers to decode stimuli, mental states, behaviors and other variables of interest from fMRI data. Most of these studies focus on fMRI low frequency oscillations. This study focuses on the amplitude of low-frequency fluctuations (ALFF) and fractional amplitude of low-frequency fluctuations (fALFF). A Voxel-wise analysis is performed on the whole brain for two groups of subjects. A machine learning algorithm is applied to two independent groups of subjects (a total of 160 healthy control and schizophrenic subjects) to classify Schizophrenia …

Mathematically Modeling The Mechanical Constants Of Thoracolumbar Fascia Under Compression, In Vivo, Vrajeshri Patel

Theses

The thoracolumbar fascia (TLF) is a complex structure made of many interconnecting aponeurosis and muscle fascia. It plays a role in posture, stabilizing the lumbosacral spine, load transfer, and respiration. Its complex structure and connections have mostly been observed through cadaveric studies while its mechanical properties have been addressed in only a few studies. Recently, new advances in ultrasound imaging have made it possible to move towards measuring tissue strain. Since this is an in vivo method, mechanical data of tissues in their natural environment allows a more accurate representation of tissue strain. However, many different methods of analyzing ultrasound …

Developing A Labview Based Thermally Stimulated Current (Tsc) Controller To Measure Residual Charge In Electrospinning, Jai Abhishekh Veezhinathan

Theses

Electrospinning is an electrohydrodynamic process for the fabrication of nanofibers which are widely used in therapeutical tissue engineering approaches. It utilizes the potential difference of an electrostatic field to overcome the surface tension of the polymer solution to extrude a fine jet of fluid which deposits on the grounded collector as a nanofiber mat. Using this process, nanofibers with diameters less than a micron can be produced.

Previous studies have shown the presence of residual charge in electrospun nanofibers. The presence and decay of residual charge during cell culture media is still unknown. In an attempt to clarify the presence …

Using The Piezoelectric Backscatter Signal For Remote Sensing Of Neural Signals, Eren Alay

Theses

In recent studies, various methods to sense neural signals are used and new methods for remote sensing of neural signals are being developed. However, there are still major difficulties in building long-term implantable neural interface systems that can reliably record neural activity and serve as the basis of brain-machine interfaces (BMI). Therefore, this research is conducted to design a remote neural sensing system that is based on modulation of the backscatter signal from a piezoelectric element by the neural signals. The hypothesis is that if the neural signal is detected with a simple amplifier and the output of this amplifier …

Admittance Control Of The Intelligent Assist Robot Manipulator For People With Duchenne Muscular Dystrophy, Madeline Corrigan

Theses

Duchenne muscular dystrophy (DMD), a neuromuscular disease with a prevalence of 1 in 3500 male births, results in characteristic muscle weakness which is progressive with age and leads to loss of independence. And, in this population, maintaining optimal quality of life depends on the preservation of self-sufficiency. Despite the loss of function, non-ambulant people with DMD retain some muscle strength, just not sufficient strength to overcome the force of gravity. There are a number of upper-limb passive and active orthotic devices that attempt to augment the loss of upper limb function in people with DMD by taking advantage of this …

Finite Element Modeling Of Temperature Elevation Due To Nir Exposure In Neural Tissue, Atabek Can Yucel

Theses

Near infrared (NIR) lasers have been used in various types of medical applications. Heating is one of the most important concerns in the neural tissue when illuminated with NIR light. Rodent models are frequently used to study laser-tissue interactions. As a part of ongoing research project in the neural interface laboratory, direct measurements of temperature in the rat brain cortex as a response to a pulsed sequence of NIR laser beam are available. In this thesis, finite element modeling approach is used to model and simulate the temperature elevation in neural tissue under the effect of NIR laser pulsing. Steady …

Effect Of Scan Time On Resting State Parameters, Dhruti Patel

Theses

In the past decade the interest in studying the spontaneous low-frequency fluctuations (LFF) in a resting-state brain has steadily grown. By measuring LFF (< 0.08 Hz) in blood-oxygen-level-dependent (BOLD) signals, resting-state functional magnetic resonance imaging (rs-fMRI) has proven to be a powerful tool in exploring brain network connectivity and functionality. Rs-fMRI data can be used to organize the brain into resting state networks (RSNs). In this thesis, rs-fMRI data are used to determine the minimum data acquisition time necessary to detect local intrinsic brain activity as a function of both the amplitude of low frequency fluctuations (ALFF) and the fractional amplitude of low frequency fluctuations (fALFF) in BOLD signals in healthy subjects. The data are obtained from 22 healthy subjects to use as a baseline for future rs-fMRI analysis. Voxel-wise analysis is performed on the whole brain, gray matter volume, and two previously established RSNs: the default mode network (DMN) and the visual system network, for all the subjects in this study.

Pearson’s correlation coefficients (r-values) are calculated from each subject. The entire time series for one subject is divided into 31 subsections and the r-values are calculated between each consecutive subsection in a subject. In total, there are 30 r- values. To better understand what the results mean across subjects and within subjects Fisher transformations are applied to the 30 calculated r-values for each subject to get a normal z-distribution. The mean across 22 subjects’ z-values is …

Nir Light Transmission Through Skin And Muscle, Deniz Ozgulbas

Theses

Light has been used extensively in the medical field for both therapeutic and diagnostic applications. Tissue optical window or therapeutic window defines the range of wavelengths where the light has the maximum transmittance through tissue. In this range, absorption and scattering effects are relatively lower when compared to the visible or middle infrared wavelengths. Knowledge of the transmittance through tissue can help determine the effective light intensities in medical applications.

The objective of this thesis is to determine the NIR light transmission through different thicknesses of animal tissue and its spatial spread due to the scattering effect. Primarily pork skin …

Brain Computer Interface Based Neurorehabilitation Technique Using A Commercially Available Eeg Headset, Abhineet Mishra

Theses

Neurorehabilitation has recently been augmented with the use of virtual reality and rehabilitation robotics. In many systems, some known volitional control must exist in order to synchronize the user intended movement with the therapeutic virtual or robotic movement. Brain Computer Interface (BCI) aims to open up a new rehabilitation option for clinical population having no residual movement due to disease or injury to the central or peripheral nervous system. Brain activity contains a wide variety of electrical signals which can be acquired using many invasive and non-invasive acquisition techniques and holds the potential to be used as an input to …