Biomedical Engineering and Bioengineering Commons^™

Design Of A Low-Cost Wireless Nirs System With Embedded Linux And A Smartphone Interface, Diogo Da Silva Dias

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Wireless near-infrared spectroscopy (NIRS) systems can help to reduce movement artifacts, and distraction due cables. Utilizing Embedded Linux (EL) can reduce size, development time, cost of a project and allow portability. The goal of this project is to develop a low-cost wireless small-sized NIRS system using EL and a Smartphone as the interface. This was achieved using a BeagleBone Black (BBB) with a deployed custom EL that: (1) controls two sources, (2) receives data from photodetectors (PDs), (3) processes, stores and transmits data via Bluetooth to an Android Smartphone. This device was implemented in under US$150 and its dimension was …

Neural Correlates Of Convergence Eye Movements In Convergence Insufficiency Patients Vs Normal Binocular Vision Controls: An Fmri Study, Chirag Bharatkumar Limbachia

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Convergence Insufficiency is a binocular vision disorder, characterized by reduced ability of performing convergence eye movements. Absence of convergence causes, eye strain, blurred vision, doubled vision, headaches, and difficulty reading due frequent loss of place. These symptoms commonly occur during near work. The purpose of this study was to quantify neural correlates associated with convergence eye movements in convergence insufficient (CI) patients vs. normal binocular vision (NBV) controls, and to examine statistical differences between them. Functional magnetic resonance imaging (fMRI) scans were collected using a 3T Siemens scanner. A disparity-driven convergence task was designed using a standard block design approach, …

Measuring Brain Activation Through Functional Magnetic Resonance Imaging (Fmri) During Visual Task Learning, Mohd Saif Usmani

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The purpose of this study is to understand the brain activity associated with learning a visual task by utilizing the applications of functional magnetic resonance imaging in cognitive neuroscience. The study was performed using two visual tasks referred to as aircraft and control, respectively. We compared the brain activation of these two visual tasks to understand the learning process of the participants. Fifteen young adults, ten males and five females, ranging in age from 19 to 35 years, participated in a ten-week study. Eight participants dropped out either voluntarily or were excluded for different reasons. The data analysis was completed …

Wear Characteristics Of Wright State University Total Ankle Replacement Under Shear And Torsion Loads, Tarun Goswami, Dinesh Gundapaneni

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Introduction: Total ankle replacement (TAR) involves replacement of the damaged bone with prosthetic components and is usually performed in patients suffering with arthritis to relieve pain and maintain motion. There are several different factors that contribute to failure of TARs but aseptic loosening is the primary method of failure in total ankle replacements. Because of its superior mechanical properties UHMWPE is used as a liner material in TARs. Wear generated from the liner due to high contact stresses during gait causes osteolysis resulting in early loosening of the prostheses.

Most of the earlier studies have focused on wear due to …

Effect Of Anthropometric Adjustments On Bmd And Bmc Z-Scores In A Population Of Prader-Willi Syndrome Pediatric Patients, Amanda E. Marker, David F. Short, Talia Eldar-Geva, Harry J. Hirsch, Varda Gross-Tsur, Maayan Tiomkin, Ari Zimran, Thomas N. Hangartner

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Two adjustment models were applied to a dataset of bone-mineral density (BMD) and bone-mineral content (BMC) from dual-energy x-ray absorptiometry (DXA) measurements of pediatric patients with Prader-Willi Syndrome (PWS). One model used weight, height and % body fat (WHF) in the calculation of Z-scores in addition to race, sex and age already included in the standard model. As percent body fat is not always available, a second model with only weight and height was also examined (WH).

A Practical Guide To An Fmri Experiment, Nasser H. Kashou

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Functional Magnetic Resonance Imaging (fMRI) has been around for two decades and research in this field has been exponentially rising. Much of this research has been dominated by basic science. Recent trends have brought the clinical realm into play in which valuable contributions can still be made. Helping the clinician understand the basic concepts behind an fMRI experiment is crucial to further developing and evaluating functional paradigms and research. Critical to designing an fMRI experiment is understanding the related physics and how fine tuning scanning parameters affects the image quality, which in turn affect the findings of an fMRI study. …

The Regulation Of The Eight-Exon Isoform Of The Coxsackievirus And Adenovirus Receptor (CarEx8) And Its Biological Relevance, Poornima Kotha Lakshmi Narayan

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The airway epithelium poses a formidable barrier for the entry of pathogenic viruses due to the formation of tight junctions between adjacent epithelial cells. The coxsackievirus and adenovirus receptor (CAR), a member of the Ig superfamily of cell junction adhesion proteins, is the primary receptor for adenovirus entry and infection. As a result of alternative splicing, two transmembrane isoforms of CAR are generated. While the seven-exon isoform of CAR (CAR^EX7) is hidden on the basolateral surface of polarized epithelia, the eight-exon isoform of CAR (CAR^EX8) localizes within the sub-apical region and at the air-exposed apical surface. …

Interpolation-Based Super-Resolution Reconstruction: Effects Of Slice Thickness, Amir Pasha Mahmoudzadeh, Nasser H. Kashou

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Standard clinical magnetic resonance imaging (MRI) is acquired in two-dimensions where the in-plane resolution is higher than the slice select direction. These acquisitions include axial, coronal, and sagittal planes. To date, there have been few attempts to combine the information of these three orthogonal orientations. This paper aims to take advantage of the different in-plane resolution acquired from each plane orientation and combine them into one volume in order to attain a higher resolution image. This combination of MRI data will allow the detection of smaller areas that would otherwise be missed using only one slice orientation. A comparison of …

Rheological Model Of Force Transmission Through The Helmet And Concussion Sensitivity, Isiah Kendall, Anthony Vicini, Tarun Goswami

Biomedical, Industrial & Human Factors Engineering Faculty Publications

In contact sports, head-to-head collisions can lead to concussions, which pose serious health risks to players. This research aims to understand the force transfer from the helmet to the brain that causes concussions in collisions using a rheological model. Experimental data was gathered from players in the National Football League and testing of one type of helmet and padding. The rheological model was verified with published data and good correlation was achieved. Further sensitivity analysis of concussion risk was performed with respect to force, body weight, mass, and impact duration fit to normal and Weibull distributions using Monte Carlo simulations …

Chemosensitive Neurons Of The Locus Coeruleus And The Nucleus Tractus Solitarius: Three Dimensional Morphology And Association With The Vasculature, Cathy D. Graham

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We studied the 3 dimensional structure of LC and cNTS neurons from neonatal rats. Neurons were identified as either chemosensitive or nonchemosensitive based on their firing rate response to hypercapnia, using whole-cell patch clamping and were passively loaded with Lucifer Yellow. The identified, loaded neurons were reconstructed and analyzed using Neurolucida Neuron Tracing Software. Chemosensitive LC neurons have less rounded soma than nonchemosensitive neurons, and they have dendrites arising from two poles to produce a fusiform appearance. The dendritic branches extend a greater distance from the soma of chemosensitive than nonchemosensitive neurons. Conversely, chemosensitive cNTS neurons were found to have …

Guanine Nucleotide Exchange Activity Of Phospholipase D2 And Its Regulation, Madhupriya Mahankali

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Phospholipase D2 (PLD2) is a cell membrane lipase that catalyzes the break down of phosphatidyl choline (PC) to phosphatidic acid (PA) and choline. PA is one of the major lipid second messengers that modulate a wide variety of signaling pathways, which are crucial for various cellular functions. In addition to this, PLD2 via binding to a large number of proteins and thereby regulates them independent of its lipase activity. Whereas PLD2 is involved in plethora of cellular functions, high levels of protein and/or activity of PLD2 are reported in variety of disease conditions, such as cancer metastasis and chronic inflammation …

Apelin Regulation Of K-Cl Cotransport In Vascular Smooth Muscle Cells., Neelima Sharma

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Atherosclerosis and high circulating levels of oxidized low density lipoproteins (oxLDL) are considered among the most important risk factors for the occurrence and development of cardiovascular disease (CVD). During the atherosclerotic lesion repair, phenotypic transition of vascular smooth muscle cells (VSMCs) from contractile to synthetic states plays a central role. In this process, enhanced proliferation/migration of VSMCs, from the tunica media to the intima, is required to sustain blood vessel endothelium integrity, and for inducing vessel wall remodeling in response to injury. At the molecular level, the activity of electroneutral potassium-chloride cotransporters or KCCs, is necessary to: a) allow changes …

Evaluation Of Functional Near Infrared Spectroscopy (Fnirs) For Assessment Of The Visual And Motor Cortices In Adults, Brenna Giacherio

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Introduction: Functional near-infrared spectroscopy (fNIRS) is a relatively young technique in the field of medical imaging. As such, it has yet to be widely implemented for clinical use, despite its promising advantages. However, unlike fMRI-its much bulkier and costly counterpart-fNIRS has yet to be proven as a standalone imaging tool within a clinical setting, particularly that of ophthalmology or physical therapy.

Methods: Ten healthy young adults (23.8 ± 4.8 years) participated in the study. Activation of the visual cortex was achieved utilizing various reversing checkerboard stimuli across three data collection sessions for each participant. Further, activation of the motor cortex …

Rab3a As A Modulator Of Homeostatic Synaptic Plasticity, Andrew G. Koesters

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The nervous system is faced with perturbations in activity levels throughout development and in disease or injury states. Neurons need to adapt to these changes in activity, but also need to maintain circuit firing within a normal range to stabilize the network from becoming too excited or too depressed. Homeostatic synaptic plasticity, the compensatory increase or decrease in synaptic strength as a result of excessive circuit inhibition or excitation, is a mechanism that the nervous system utilizes to keep network activity at normal levels. Despite intense effort, little is known about the mechanisms underlying homeostatic synaptic plasticity. Numerous studies have …

Segmentation And Analysis Of Mris Of Infants With Dysphagia, Irfaan A. Dar

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Neonates are at a rapid stage of development from birth throughout childhood. Impairments to certain cortical areas can result in long lasting neuro-cognitive dysfunctions. Disorders to the swallowing neural pathways can have detrimental effects throughout life course since methods to provide nutrition can be comprised. Dysphagia, or the inability to swallow, can be caused by a multitude of reasons, chiefly neurological, but the underlying disruptions to the neural pathways are not defined. In this study we investigated the growth of multiple cortical areas involved in the swallowing pathway and categorized feeding outcomes with neural growth. Results showed that infants that …

Finite Element Simulation Of Skull Fracture Evoked By Fall Injuries, Anthony Vicini

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This study presents novel predictive equations for von Mises stresses and deflection of bones in the frontal and lateral regions of the skull. The equations were developed based on results of a finite element model developed here. The model was validated for frontal and lateral loading conditions with input values mimetic to fall scenarios. Using neural network processing of the information derived from the model achieved R2 values of 0.9990 for both the stress and deflection. Based on the outcome of the fall victims, a threshold von Mises stress of 40.9 to 46.6 MPa was found to indicate skull fracture …

The Role Of Subunit Iii In The Functional And Structural Regulation Of Cytochrome C Oxidase In Rhodobacter Spheroids, Khadijeh Salim Alnajjar

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Cytochrome c oxidase (COX) catalyzes the oxidation of ferrocytochrome c and the reduction of oxygen to water while concomitantly translocating protons across the inner mitochondrial membrane. The catalytic core of COX consists of three subunits that are conserved from the bacterial to the mitochondrial forms of the enzyme. Subunits I and II (SUI and SUII) contain the metal centers where electrons are transferred and oxygen binds for reduction. Subunit III (SUIII) does not contain any metals and has an unknown function. It contains three conserved histidine residues (3, 7 and 10) that are surface exposed and are in close proximity …

Peroxisome Proliferator-Activated Receptor Alpha: Insight Into The Structure, Function And Energy Homeostasis, Dhawal P. Oswal

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Peroxisome proliferator-activated receptor alpha (PPAR alpha) belongs to the family of ligand-activated nuclear transcription factors and serves as a lipid sensor to regulate nutrient metabolism and energy homeostasis. The transcriptional activity of PPAR alpha is thought to be regulated by the binding of exogenous ligands (example, fenofibrate, TriCor), as well as endogenous ligands including fatty acids and their derivatives. Although long-chain fatty acids (LCFA) and their thioesters (long-chain fatty acyl-CoA; LCFA-CoA) have been shown to activate PPAR alpha of several species, the true identity of high-affinity endogenous ligands for human PPAR alpha (hPPAR alpha) has been more elusive. This two …

An Investigation Of Thermal Imaging To Detect Physiological Indicators Of Stress In Humans, Carl Brady Cross

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Real-time, stand-off sensing of humans to detect emotional state would be valuable in many defense, security and medical scenarios. Using a multimodal sensor platform that incorporates high-resolution visible-wavelength and mid-wave infrared cameras and a millimeter-wave (mmW) radar system, the detection of physiological indicators of psychological stress is tested through laboratory experiments. Our approach focuses on thermal imaging to measure temperature patterns in distinct facial regions representative of underlying hemodynamic patterns. Experiments were designed to: 1) determine the ability of thermal imaging to detect high levels of psychological stress and assess responses to physical versus psychological stressors; 2) evaluate the fidelity …

Mobile Computing For Trauma And Surgical Care Continuous Education, Muhammad Y. Alamoud

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In medical domain, mobile computing has proven to be convenient, effective, and productive. With varying screen sizes, there is a challenge to present the right information in the right format such that medical practitioners can access information quickly. In this thesis, we discuss how mobile computing can be used as a way of continuous education for medical practitioners in the field of trauma and surgical care, and provide design guidelines on how to effectively present information on different mobile form factors. The focus is on three screen sizes- 4.7, 7 and 10.1 in., and three interaction methods - dropdown, slide, …

Evaluation Of Interpolation Effects On Upsampling And Accuracy Of Cost Functions-Based Optimized Automatic Image Registration, Amir Pasha Mahmoudzadeh, Nasser H. Kashou

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Interpolation has become a default operation in image processing and medical imaging and is one of the important factors in the success of an intensity-based registration method. Interpolation is needed if the fractional unit of motion is not matched and located on the high resolution (HR) grid. The purpose of this work is to present a systematic evaluation of eight standard interpolation techniques (trilinear, nearest neighbor, cubic Lagrangian, quintic Lagrangian, hepatic Lagrangian, windowed Sinc, B-spline 3rd order, and B-spline 4th order) and to compare the effect of cost functions (least squares (LS), normalized mutual information (NMI), normalized cross correlation (NCC), …

Elucidating A Role Of Btf And Trap150 In Pre-Mrna Processing And Cell Cycle Progression, Sapna N. Varia

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Transcription of protein-coding genes is coordinated with pre-mRNA processing as well as mRNP assembly and nuclear export in mammalian cells. In this dissertation, I examined the functions of two homologous non-classical serine-arginine-rich (SR) proteins, Btf (BCLAF1) and TRAP150 in these steps of gene regulation. Since Btf and TRAP150 share 39% sequence identity and 66% sequence similarity, I also examined whether Btf and TRAP150 have overlapping or distinct functions in pre-mRNA processing. Using two different reporter loci, I showed in-situ recruitment of Btf and TRAP150 at reporter transcription sites, and I identified both Btf and TRAP150 being associated with a core …

Differential Regulation Of The Hippocampal Taurine Transporter Protein In Rat Brain: Mechanisms Contributing To Neuronal Volume Regulation, Amanda Noelle Freeman

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Background. In osmotic edema, net efflux of taurine from neurons and accumulation by astrocytes contributes to neuronal volume regulation and astrocytic swelling. Taurine is accumulated in both cell types by a sodium- and chloride-dependent 72-75 kDa protein transporter, TauT. TauT functional activity decreases in osmotically swollen neurons but is unaltered in swollen astrocytes, in vitro. This swelling-induced downregulation of neuronal TauT activity is blocked with the tyrosine kinase (TK) inhibitor, genistein. In contrast, PKC activation has no effect on neuronal TauT, but inhibits astrocytic TauT. Thus, we hypothesize that during osmotic swelling, neuronal TauT activity is regulated by a TK …

Reactive Oxygen Modulates B Lymphocyte Function Via The Nfκb/Rel Pathway, Eric J. Romer

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Reactive Oxygen Intermediates (ROI) can significantly affect B Lymphocyte function, but the effects on key signaling pathways and gene expression in activated and non-activated B lymphocytes are largely undefined. This study demonstrates a concentration dependent effect of exogenous hydrogen peroxide on the transcriptional regulation of a 3' regulatory region of the Immunoglobulin heavy chain gene (3'IghRR). Specifically, low μM hydrogen peroxide induces an enhancing effect while higher μM hydrogen peroxide (greater than or equal to 100 μM) is suppressive. The enhancing effects of hydrogen peroxide on 3'IghRR activity are dependent on the NFκB/Rel pathway, and appear to be most prominent …

A Comprehensive Tool And Analytical Pathway For Differential Molecular Profiling And Biomarker Discovery, Claude Curtis Grigsby

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The key requirements to any empirically based study are to: (1) accurately measure and then compare the collected results in determining the result of the hypothesis being tested; and (2) collect a sample representative of the entities being studied. To demonstrate that an informatics tool can be designed that provides spectral registration, spectral and chromatographic alignment, visualization, and comparative analysis for data generated from multiple analytical platforms, e.g., LC-MS and GC-MS, the results and data analysis of five unique sets of experiments using a suite of novel informatics tools are presented. Comprehensive and reproducible sample collection techniques were developed concomitantly …

Simulating Hemodynamics In In Vitro Culture Models: Implications On Nano-Biointeractions, Monita Sharma

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Gold nanoparticles (Au-NPs) have demonstrated great potential in the development of a variety of tools with applications ranging from biomedical to military fields. Consequently, there is increasing concern regarding the toxic potential of these nanomaterials. Biodistribution studies demonstrate clearance of Au-NPs from peripheral circulation and bulk localization primarily in the liver and spleen post- intravenous administration. Deposition of Au-NPs in spleen suggests the potential for direct exposure of immune cells to these foreign materials under relatively static conditions. Although much less, due to the Blood Brain Barrier (BBB), Au-NPs appear to also deposit in the brain, suggesting that the resident …

The Molecular Genetics Learning Progressions: Revisions And Refinements Based On Empirical Testing In Three 10th Grade Classrooms, Amber Nicole Todd

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In the past few decades, there has been a large push for increasing scientific literacy (AAAS, 1989; AAAS, 1993; Achieve, 2013; NRC, 1996; NRC, 2012), especially in areas that are rapidly advancing, like molecular genetics. Much research has been done on student understandings of molecular genetics and the consensus is that the concepts are difficult both to learn and teach (Fisher, 1992; Horwitz, 1996; Kindfield, 1992; Lewis & Kattmann, 2004; Marbach-Ad & Stavy, 2000; Stewart et al., 2005; Venville & Treagust, 1998; etc.). Two learning progressions in molecular genetics have been produced (Duncan et al., 2009; Roseman et al. 2006), …

Investigation Of The Utility Of Center Frequency In Electroencephalographic Classification Of Cognitive Workload Transitions, Jones Melissa

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Successful classification of human cognitive workload is a vital component in identifying and avoiding potential performance deficits resulting from operator work overload. Previous research suggests that electroencephalogram (EEG) derived features, including center frequency, provide a robust signal which may be used to obtain highly accurate workload classification. The purpose of this work is to investigate evidence of physiological hysteresis and determine if center frequency improves a classifier's ability to correctly identify workload level. Results confirmed that including spectral data creates the most robust feature sets, while center frequency across all bands is equally reliable for classifying workload in the case …

New Insights Into The Spinal Recurrent Inhibitory Pathway Normally And After Motoneuron Regeneration, Ahmed Zayed Obeidat

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Despite more than seven decades of intensive research, uncertainty is the hallmark of spinal recurrent inhibition. The simplest possible structure that is formed between the a-motoneuron and its inhibitory interneurons has been the subject of long lasting scientific debate. To date, there is no consensus on the functional significance of this circuit. Even the simplest assumption of a negative feedback loop does not hold true. The current work used the technique of in vivo intracellular recording from the adult rat a-motoneurons to study the normal function and the plasticity after nerve injury and regeneration of this simple, yet intricate spinal …

Utility Of A Volume-Regulated Drive System For Direct Mechanical Ventricular Actuation, Benjamin A. Schmitt

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Direct Mechanical Ventricular Actuation (DMVA) is a non-blood contacting cardiac assist device that augments ventricular function. The purpose of this study was to determine if a volume-regulated "hand pump" drive system and a pressure-regulated "switch tank" drive system provide equivalent levels of cardiac support. Canine (n=2) and swine (n=4) were instrumented for hemodynamic monitoring and intravascular echocardiography. DMVA support was assessed during both severe heart failure and fibrillation. Pump function was evaluated using hemodynamic measures to calculate stroke work. Myocardial function was assessed using echocardiographic speckle tracking to quantify strain rate. Results were compared between groups using paired t-tests. There …