Biomedical Engineering and Bioengineering Commons^™

A Study On The Applications And Toxicity Assessments Of Carbon Nanotubes In Tissue Engineering, Rena Baktur

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Carbon nanotubes (CNTs) are one of the most popular nanomaterials. There has been increasing interest in the development and applications of carbon nanotubes due to their huge potential in industrial and medical applications. Recent applications of carbon nanotubes include development of scaffolds and drug delivery systems. Despite rapidly emerging applications of CNTs, little is known about the impact of CNTs on cellular processes, especially mesenchymal stem cell (MSC)'s differentiation. Also, the effects of nanoparticle exposure under different conditions on cellular responses have not been well characterized yet.

To characterize the effects of CNTs on creating nanoscale scaffolds for tissue engineering, …

Algal Biofilm Production And Harvesting System For Wastewater Treatment With Biofuels By-Products, Logan Christenson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Excess nitrogen and phosphorus in discharged wastewaters can lead to downstream eutrophication, ecosystem damage, and impaired water quality that may affect human health. Chemical-based and physical-based technologies are available to remove these nutrients; however, they often consume significant amounts of energy and chemicals, greatly increasing treatment costs. Algae are capable of removing these pollutants through biomass assimilation, and if harvested, can be utilized as a feedstock for biomethane or biodiesel production. Currently, difficulties in harvesting, concentrating, and dewatering algae have limited the development of an economically feasible treatment and production process. When algae are grown as surface-attached biofilms, the biomass …

Selective Biochlorination Of Hydroxyquinolines By A Flavin-Dependent Halogenase, Fuchao Xu, Amanda Merkley, Dayu Yu, Jixun Zhan

Biological Engineering Faculty Publications

Rdc2 is a flavin-dependent halogenase from Pochonia chlamydosporia. Through the introduction of a His₆-tag to both the N- and C-termini, the isolation yield of Rdc2 from Escherichia coli using Ni-NTA affinity chromatography was increased by three-fold. In vitro reaction of Rdc2 and a flavin reductase (Fre) with seven different hydroxyquinolines revealed that 3-hydroxyquinoline (3), 5-hydroxyquinoline (5), 6-hydroxyquinoline (6), and 7-hydroxyquinoline (7) can be specifically halogenated. These products were prepared by incubating the corresponding substrates with IPTG-induced E. coli BL21(DE3)/Rdc2. They were respectively characterized as 3-hydroxy-4-chloroquinoline (3a), 5-hydroxy-6-chloroquinoline (5a), 5-chloro-6-hydroxyquinoline (6a), and 7-hydroxy-8-chloroquinoline (7a) by NMR and MS …

Effects Of Static Stretching On Foot Velocity During The Instep Soccer Kick, Craig D. Workman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study was to assess the acute effects of static stretching on foot velocity at impact with a soccer ball. Eighteen Division I female soccer athletes underwent two test conditions separated by 48 hr. Each condition was randomly assigned and began by placing four retro-reflective markers on bony landmarks of the ankle (total of eight markers, four on each ankle). One condition was the no-stretch condition, in which each participant performed a self-paced jog for 5 min as a warm-up, and then sat quietly for 6 min before performing three maximal instep kicks into a net. The …

A Synthetic Biological Engineering Approach To Secretion- Based Recovery Of Polyhydroxyalkanoates And Other Cellular Products, Elisabeth Linton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The costs associated with cellular product recovery commonly account for as much as 80% of the total production expense. As a specific example, significant recovery costs limit commercial use of polyhydroxyalkanoates (PHA), which comprise a class of microbially-accumulated polyesters. PHAs are biodegradable compounds that are of interest as a sustainable alternative to petrochemically-derived plastics. Secretion-based recovery of PHAs was studied to decrease PHA production costs. Type I and II secretory pathways are commonly used for the translocation of recombinant proteins out of the cytoplasm of E. coli. Proteins were targeted for translocation using four signal peptides (HlyA, TorA, GeneIII, …

The Hypericum Perforatum Herb As An Antimycobacterial Agent And Its Implications As An Additional Tuberculosis Medication, Trent W. Mortensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An immediate demand exists for new tuberculosis (TB) antibiotics due to the ever-increasing spread of drug-resistant strains. The drug-development process goes through four phases, the first (Phase 0) of which is to demonstrate and investigate drug effectiveness and toxicity. This research investigated the effectiveness of the Hypericum perforatum herb (commonly St. John's wort (SJW)) in its growth inhibition of mycobacteria and its viability effect on human lung cells.

Organic-solvent SJW extracts were effective at inhibiting every nonpathogenic genetically sequenced Mycobacterium isolate currently available (six isolates) in preliminary studies. Quantitative studies of five Mycobacterium isolates showed an order of concentration sensitivity …

Comparative Studies On Oxygen Mass Transfer For The Design And Development Of A Single-Use Fermentor, Kristan L. Sorenson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Accurate experimental oxygen mass transfer coefficient, a measure of how quickly oxygen travels from a gas bubble to the bulk liquid, is important for comparing performance and for evaluating the oxygen transfer capability of a fermentor. Delays in probe response and changing gas volumes upon start-up of gassing affect the accuracy of oxygen transfer measurements. To mitigate these inaccuracies, a standard correction procedure for oxygen mass transfer data was established for highly oxygenated, well-mixed fermentation systems. Probe response time correction was generated by applying a second-order response model to dissolved oxygen probes and shown to be effective within 4%. By …

Characterization And Physicochemical Modifications Of Polymer Hollow Fiber Membranes For Biomedical And Bioprocessing Applications, Benjamin R. Madsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Hollow fiber membranes (HFMs) formed through phase inversion methods exhibit specific physicochemical characteristics and generally favorable surface and mechanical properties, supporting their use in diverse applications including ultrafiltration, dialysis, cell culture, bioreactors, and tissue engineering. Characterization of, and modifications to, such membranes are important steps in achieving desired characteristics for specific applications.

HFMs subject to gas, irradiation, and chemical sterilization techniques were characterized based on several analytical techniques. It was revealed that these common sterilization techniques can cause inadvertent changes to HFM properties. While these changes may cause detrimental effects to HFMs used in filtration, the methods of sterilization are …

Designing An Instrument Based On Native Fluorescence To Determine Soil Microbial Content At A Mars Analog Site, Heather D. Smith

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For this research project we designed an instrument to detect bacteria via biomolecular fluorescence. We introduce the current understanding of astrobiology, our knowledge of life beyond Earth, and the commonality of Earth life as it pertains to the search for life on Mars. We proposed a novel technique for searching for direct evidence of life on the surface of Mars using fluorescence. We use the arid region of the Mojave Desert as an analog of Mars. Results indicate the fluorescence of the biotic component of desert soils is approximately as strong as the fluorescence of the mineral component. Fluorescence laboratory …

Synchronization And Media Exchange In Large-Scale Caenorhabditis Elegans Cultures, Jason D. Brown

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The nematode Caenorhabditis elegans is a model organism for understanding sensory molecules of multicellular organisms. Ovulating hermaphrodites produce putative pheromone(s) that cause male attraction. Because pheromones are produced in such small quantities, adult conditioned-media from large-scale synchronous culture is necessary to analyze these pheromones. Current protocols for culture synchronization have volume constraints that limit large-scale synchronous cultures and current methodology for adult conditioned-media production is impractical.

Modification of Tangential Flow Filtration (TFF) systems was investigated for use as a method to increase the volume limits of bleach egg harvest for C. elegans culture synchronization. Also, an adult retention device built …

Inducing A Normal Phenotype In Breast Epithelial Cells Using A Three-Dimensional Basement Membrane Extract Culture System: A Study On The Reversion Of Cancer, Ross H. Booth

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Experimentally, traditional developmental models and transgenic animals consistently underscore the importance of studying cell behavior in the correct tissue context. However, live animal experimentation is inherently complex, and systematic assessment of the effects of individual variables, such as cell shape and matrix compliance on cell behavior, is extremely difficult at best. Two-dimensional monolayer culture of key individual cell types has provided abundant, fundamental information on cell response, but cannot be used to show the normal phenotype of breast epithelial cells. Furthermore, their results often fail to translate into in vivo and clinical studies. It has been previously established that normal …

Controlling Nonspecific Adsorption Of Proteins At Bio-Interfaces For Biosensor And Biomedical Applications, Harshil D. Dhruv

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Partitioning of poly(ethyleneglycol) (PEG) molecules in 2-D and 3-D systems is presented as a self-assembly approach for controlling non-specific adsorption of proteins at interfaces.

Lateral restructuring of multi-component Langmuir monolayers to accommodate adsorbing proteins was investigated as a model 2-D system. Ferritin adsorption to monolayers containing cationic, nonionic, and PEG bearing phospholipids induced protein sized binding pockets surrounded by PEG rich regions. The number, size, and distribution of protein imprint sites were controlled by the molar ratios, miscibility, and lateral mobility of the lipids.

The influence of PEG chain length on the ternary monolayer restructuring and protein distribution was also …

Pyrene Fate Affected By Humic Acid Amendment In Soil Slurry Systems, Y. Liang, D. Sorensen, Ronald C. Sims, Joan Mclean

Biological Engineering Faculty Publications

Background

Humic acid (HA) has been found to affect the solubility, mineralization, and bound residue formation of polycyclic aromatic hydrocarbons (PAHs). However, most of the studies on the interaction between HA and PAH concentrated on one or two of the three phases. Few studies have provided a simple protocol to demonstrate the overall effects of HA on PAH distribution in soil systems for all three phases.

Methods

In this study, three doses of standard Elliott soil HA (ESHA), 15, 187.5, and 1,875 μg ESHA/g soil slurry, were amended to soil slurry systems. ¹⁴C-pyrene was added to the systems along …

The Power Of Soil: Using It To Our Advantage, Judith L. Sims, R. Otis

Biological Engineering Faculty Publications

No abstract provided.

Temperature Effect On Tert-Butyl Alcohol (Tba) Biodegradation Kinetics In Hyporheic Zone Soils, M. H. Greenwood, Ronald C. Sims, J. E. Mclean, W. J. Doucette

Biological Engineering Faculty Publications

Background

Remediation of tert-butyl alcohol (TBA) in subsurface waters should be taken into consideration at reformulated gasoline contaminated sites since it is a biodegradation intermediate of methyl tert-butyl ether (MTBE), ethyl tert-butyl ether (ETBE), and tert-butyl formate (TBF). The effect of temperature on TBA biodegradation has not been not been published in the literature.

Methods

Biodegradation of [U ¹⁴C] TBA was determined using hyporheic zone soil microcosms.

Results

First order mineralization rate constants of TBA at 5°C, 15°C and 25°C were 7.84 ± 0.14 × 10^-3, 9.07 ± 0.09 × 10^-3, and 15.3 ± 0.3 …

Theory And Application Of Landfarming To Remediate Pahs And Mineral Oil Contaminated Sediments: Beneficial Reuse, J. Harmsen, W. Rulkens, Ronald C. Sims, P. Ritjema, A. Zweers

Biological Engineering Faculty Publications

When applying landfarming for the remediation of contaminated soil and sediment, a fraction of the soil-bound contaminant is rapidly degraded; however, a residual concentration may remain, which slowly degrades. Degradation of polycyclic aromatic hydrocarbons (PAHs) and mineral oil can be described using a multi-compartment model and first-order kinetics, in which three degradable fractions are distinguished; (1) rapid, (2) slowly, and (3) very slowly degradable. Using this model populated with data from long-term experiments (initiated in 1990), it is shown that time frames from years to decades can be necessary to clean the soil or sediment to obtain a target below …

Pyrene Mineralization By Mycobacterium Sp. Strain Kms In A Barley Rhizosphere, R. Child, C. Miller, Y. Liang, Ronald C. Sims, A. J. Anderson

Biological Engineering Faculty Publications

To determine whether the soil Mycobacterium isolate KMS would mineralize pyrene under rhizosphere conditions, a microcosm system was established to collect radioactive carbon dioxide released from the labeled polycyclic aromatic hydrocarbon. Microcosms were designed as sealed, flow-through systems that allowed the growth of plants. Experiments were conducted to evaluate mineralization of ¹⁴C-labeled pyrene in a sand amended with the polycyclic aromatic hydrocarbons degrading Mycobacterium isolate KMS, barley plants, or barley plants with roots colonized by isolate KMS. Mineralization was quantified by collecting the ¹⁴CO₂ produced from ¹⁴C-labeled pyrene at intervals during the 10-d incubation period. Roots …

Validating Surface Energy Balance Fluxes Derived From Airborne Remote Sensing, José Luis Chávez Egüez

Biological Engineering

Remote sensing-derived energy balance components were compared against measured eddy covariance energy balance terms using heat flux source area models to validate the airborne multispectral remote sensing procedure in the estimation of instantaneous and daily evapotranspiration rates.

A procedure was developed to generate raster layers of the footprint weights for weighting/integrating the different components of the energy balance model and obtain meaningful comparisons to similar energy balance terms measured at eddy covariance and/or Bowen ratio stations.

Soil heat flux and surface aerodynamic temperature models were studied in an effort to improve the remote sensing estimation of distributed evapotranspiration rates. Aerial …

Beneficial Reuse And Sustainability: The Fate Of Organic Compounds In The Land-Applied Waste, M. R. Overcash, Ronald C. Sims, J. L. Sims, K. C. Nieman

Biological Engineering Faculty Publications

Land application systems, also referred to as beneficial reuse systems, are engineered systems that have defined and permitted application areas based on site and waste characteristics to determine the land area size requirement. These terrestrial systems have orders of magnitude greater microbial capability and residence time to achieve decomposition and assimilation compared with aquatic systems. In this paper we focus on current information and information needs related to terrestrial fate pathways in land treatment systems. Attention is given to conventional organic chemicals as well as new estrogenic and pharmaceutical chemicals of commerce. Specific terrestrial fate pathways addressed include: decomposition, bound …

Bie6810 - Biochemical Engineering, Spring 2004, Ron Sims

Biological and Irrigation Engineering - OCW

Biochemical processes, thermodynamics, and kinetics are used in the application of engineering principles to analyze, design, and develop processes using biocatalysts. Processes covered in the course include those that are involved in the formation of desirable compounds and products or in the transformation, or destruction of unwanted or toxic substances.

Bie6300 - Irrigation & Conveyance Control Systems, Spring 2004, Gary P. Merkley

Biological and Irrigation Engineering - OCW

This is a course regarding measurement of flow rates and water levels. Calibration, design, and selection of open-channel flow measurement structures. Design of irrigation conveyance and distribution system infrastructure.

Bie6150 - Surface Irrigation Design, Spring 2004, Wynn Walker

Biological and Irrigation Engineering - OCW

This course was originally developed for the United States Department of Agriculture. It contains nearly 20 video lecture presentations with accompanying slides in English, Arabic, and French, an online textbook, homework assignments, and downloadable surface irrigation simulation software also developed by Dr. Walker. This course highlights design and evaluation of surface irrigation systems, field measurements for evaluating and improving uniformity and efficiency, simulation of surface systems, and land leveling computation and equipment. Note: The simulation software is designed to run on a PC only.

Short-Term Water Use Dynamics In Drainage Lysimeters, Musa V. Dlamini

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Turfgrass water use (seasonal turfET) and crop coefficients were determined and a mathematical soil-water balance model for non-weighing drainage lysimetcrs, which simulates the occurrence (timing and amount) of drainage, was developed. Pairs of non-weighing drainage lysimeters were used to determine crop coefficients for turfgrass in four locations in the state of Utah: Logan Golf and Country Club, Murray Golf Course, Brigham Young University (Spanish Fork) Experiment Farm, and Sunbrook Golf Course (St. George).

Daily weather data including air temperature, relative humidity, average wind travel, total solar radiation, precipitation, and average soil temperature were collected with an electronic weather station at …

Evapotranspiration Using A Satellite-Based Surface Energy Balance With Standardized Ground Control, Ricardo Trezza

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study evaluated the potential of using the Surface Energy Balance Algorithm for Land (SEBAL) as a means for estimating evapotranspiration (ET) for local and regional scales in Southern Idaho. The original SEBAL model was refined during this study to provide better estimation of ET in agricultural areas and to make more reliable estimates of ET from other surfaces as well, including mountainous terrain. The modified version of SEBAL used in this study, termed as SEBAL_ID (lD stands for Idaho) includes standardization of the two SEBAL "anchor" pixels, the use of a water balance …

Fate And Behavior Of Lead In Soils Planted With Metal-Resistant Species (River Birch And Smallwing Sedge), S. P. Klassen, J. E. Mclean, P. R. Grossl, Ronald C. Sims

Biological Engineering Faculty Publications

Phytoremediation of metal-contaminated soils requires an understanding of the interactions between metal-tolerant plant species and soil chemical properties controlling the bioavailability of metals. We conducted controlled laboratory studies to investigate the effects that river birch (Betula occidentalis Hook.) and smallwing sedge (Carex microptera Mack.) had on the fate and behavior of Pb in a contaminated soil (3000 mg Pb/kg) and tailings (13 000 mg Pb/kg) collected from an abandoned mining site in Utah. Significant Pb accumulation in aboveground tissue was observed in smallwing sedge (≥1000 mg/kg dry wt.) in both the soil and tailings, but Pb was primarily excluded by …

Preliminary In Vivo Studies Of A New Injectable Bone Substitute, F. Millot, G. Grimandi, P. Weiss, G. Daculsi

Cells and Materials

Calcium-phosphate materials have been increasingly employed in orthopedic and dental applications in recent years and are now being developed for use in noninvasive surgery or as carriers for drug delivery systems. We developed an injectable bone substitute (IBS) for percutaneous orthopedic surgery which uses a biphasic calcium-phosphate (BCP) mixture composed of hydroxyapatite (60%) and ß-tricalcium phosphate (40%), together with a polymer (hydroxy-propyl-methyl-cellulose, HPMC) as a carrier. The best BCP/polymer ratio was determined to achieve the highest mineral phase in the composite and provide the rheological properties required for injectable material.

The in vivo biocompatibility and biofunctionality of IBS were …

Mechanical Properties Of Dendritic Pd-Cu-Ga Dental Alloys, Efstratios Papazoglou, Qiang Wu, William A. Brantley, John C. Mitchell, Glyn Meyrick

Cells and Materials

Three Pd-Cu-Ga dental alloys with very similar nominal compositions and dendritic as-cast microstructures were selected for study: Option (Ney Dental) and Spartan (Williams/lvoclar) contain a small amount of boron, while Spartan Plus (Williams/Ivoclar) is boron-free. Bars of each alloy were tested in tension for the as-cast and simulated porcelain-firing conditions, and values of mechanical properties were measured. Fracture surfaces and microstructures of axially sectioned and etched fracture specimens were observed with the scanning electron microscope (SEM). Except for the elastic modulus, significant differences were typically found in alloy properties. Heat treatment eliminated the dendritic microstructure, decreased strength and increased ductility. …

X-Ray Diffraction And Scanning Electron Microscopy Analyses Of A Gallium-Based Dental Restorative Alloy, Randa E. Shaker, William A. Brantley, Qiang Wu, John C. Mitchell

Cells and Materials

Specimens of a gallium-based dental alloy were prepared with different condensation techniques, with and without the removal of a surface layer, and after aging for 2 hours at 50°, 100° and 150°C. X-ray diffraction at times ranging from 10 minutes to 1 day showed the development of the four matrix phases (ß-Sn, CuGa₂, Ga₂₈Ag₇₂, and In₄Ag₉) during the setting reaction. Scanning electron microscope (SEM) examination of specimens loaded to failure revealed brittle fracture, with greater porosity for hand-condensed specimens, and provided insight into crack propagation processes. Aging increased …

Formation Of Cement Lines, But Not Laminae Limitantes, Requires Contact Of Differentiating Osteogenic Cells To Solid Surfaces, M. M. Hosseini, A. Shiga, J. E. Davies

Cells and Materials

We designed in vitro experiments to address the hypothesis that cement lines and laminae limitantes are structurally distinct as a result of cell contact, or absence of cell contact, during their elaboration. We subcultured young adult primary rat bone marrow cells in well inserts with polycarbonate membranes of 0.45 µm pore size, which allowed protein but not cell passage. The cells, extracellular matrix, lower side of the membrane and the surface of the polystyrene culture well were examined by scanning and transmission electron microscopy. The cells elaborated a bone-like matrix on top of the membrane. In such cultures the …

Effects Of Casting Conditions And Annealing On Microstructures And Vickers Hardness Of Dendritic Pd-Cu-Ga Dental Alloys, William A. Brantley, Qiang Wu, Zhuo Cai, Stanley G. Vermilyea, John C. Mitchell, Michael C. Comerford

Cells and Materials

Three Pd-Cu-Ga alloys with as-cast dendritic microstructures and very similar compositions, two containing less than 1 wt% boron and the third boron-free, were cast with normal bench-cooling or rapid-quenching into water. Quenched specimens were also heat treated at temperatures of 1000°, 1200°, 1500° and 1800°F that span the firing cycles for dental porcelain. Similar values of Vickers hardness were observed for all three alloys, suggesting little effect from boron on yield strength. The hardness was relatively insensitive to the experimental conditions, except for heat treatment at 1500° and 1800°F where significant softening occurred with transformation of the microstructure to Pd …