Biomedical Engineering and Bioengineering Commons^™

Tendon Reflex Protocol For Exploring The Mechanisms Associated With Whole Body Vibration, Ikechukwu Okeke

Theses

Whole body vibration (WBV) machines have in recent years been widely used as rehabilitation equipment. Whole body vibration has been shown to have positive effects on muscle response. Cerebral palsy (CP) is a neurodevelopmental condition that includes a group of non-progressive, but often changing, motor impairment syndromes arising in the early stages of human development. The aim of this project was to design a protocol and related instruments to assess the tendon reflex in response to WBV. Both a press pedal used for measuring the force exerted by the foot and a hammer used for measuring the stimulating force were …

Monitoring Of Cerebellar Injury Using Micro Ecog Signals In Ketamine/Xylazine Treated Rats, Gokhan Ordek

Dissertations

Much of the cerebellar research has been conducted in anesthetized animals, particularly using ketamine/xylazine combination in rats, and yet the absolute impact of the anesthesia on the neural circuit remains unanswered . In the current study, spontaneous electrical activity and sensory evoked potentials from the cerebellar surface with chronically implanted, flexible-substrate, multielectrode arrays in rats were collected and analyzed with the motor cortex signals. The power spectra and the intercontact coherence plots of the spontaneous activity in the awake-quiet animals extended up to 800 Hz in the cerebellum and only up to 200 Hz in the motor cortex. Ketamine/xylazine anesthesia …

Developing An Insulin Producing Tissue Using Mouse Embryonic Stem Cells, Neha Mahendrakumar Jain

Dissertations

This thesis describes derivation of pancreatic insulin producing cells (IPCs) from mouse embryonic stem cells and development of three-dimensional (3D) engineered tissue system to provide physiologic culture conditions for IPCs. Upon using a previously established protocol, IPCs have been successfully derived from mouse embryonic stem cells and characterized in vitro . IPCs not only express classical markers of pancreatic beta cells but also exhibit glucose responsive behavior. Interestingly while deriving IPCs from mouse embryonic stem cells, islet endothelial cells have also been identified and successfully isolated from the culture. Derivation of a pure population of endothelial cells expressing specific markers …

An Electrospinning Apparatus For The Production Of Heterogeneous Scaffolds And Their Application In Cartilage Regeneration, Andrew Ryan Hollingsworth

Theses

The human body contains a vast array of soft and hard tissues, each with their own unique set of physical, chemical, mechanical, and electrical properties. It is the combination of these tissues that allows the human body to function as it does. However, these tissues are subject to wear, fatigue, and injury and thus can potentially limit the functions of the body. Therefore, tissue engineering has sought various natural and synthetic materials that can be used for fabrication of cellular scaffolds that have the ability to promote cellular attachment, proliferation, differentiation, and eventual whole tissue formation for replacement and repair …

Visualeyes 2020: A Software Suite To Integrate Instrumentation To Study The Near Triad Of Vergence, Stephen J. Lestrange

Theses

A complete instrumentation suite has been constructed for use in a randomized clinical trial to be funded from the National Institute of Health and study the underlying potential mechanism(s) of vision therapy. This suite is designed to track rotation of each eye (vergence) as well as measure the lens power of the eye's lens (accommodation). The system is designed to dissect the near triad which is composed of the pupil constriction, vergence and accommodation. The visual targets are programmed to be shown on two sets of computer screens which allowed vergence, accommodation and proximal vergence cues to be presented in …

Fem Of Electrospinning Compared To Inkjet Printing Model, Maikel Ghaly

Theses

Electrospinning is a process that uses electrostatic forces to produce nanofibers, or fibers in the nano scale. Nanofibers are widely used in many fields like drug delivery and tissue engineering. Nowadays, it is gaining much attention in the research community as an advantageous process. However, there are many parameters that controlnanofiber formation. This research intends to develop a model of electrospinning on the basis of an inkjet printer technique by using a computer aided simulation (COMSOL). Inkjet printing is a technique that delivers small volumes at high repetitions which can betransported by electrostatic forces through the air onto their intended …

Characterizing Motor Control Signals In The Spinal Cord, Yi Guo

Dissertations

The main goal of this project is to develop a rodent model to study the central command signals generated in the brain and spinal cord for the control of motor function in the forearms. The nature of the central command signal has been debated for many decades with only limited progress. This thesis presents a project that investigated this problem using novel techniques. Rats are instrumented to record the control signals in their spinal cord while they are performing lever press task they are trained in. A haptic interface and wireless neural data amplifier system simultaneously collects dynamic and neural …

Optimizing Alginate-Chitosan Microcapsules Using Co-Axial Air Flow Method As 3d Stem Cell Microenvironment, Noel Alfonso

Theses

Microencapsulation of cells is gaining popular interest in the field of biomedical engineering because it provides a more effective 3D scaffold that can mimic the cell microenvironment. The benefits of using microcapsules are biocompatibility, biodegradability, nontoxicity, and formation under mild gelation conditions. In this study, the ability of the alginate microcapsules to control the proliferation and differentiation of mouse OCT4-GFP embryonic stem cells is investigated. Microcapsules are produced by extrusion of alginate into a calcium chloride gelation bath with the aid of a co-axial air flow. It is shown that the size of the spheres is controlled based on needle …

Evaluation Of Methods To Account For Release From Nanofiber Scaffolds, Jennifer Moy

Theses

Electrospinning is a common technique utilized to form fibers from the micro- to nanometer range. Nanofibers form through electrospinning can be utilized as scaffolds since the fiber structures are similar to the structures within the extracellular matrix. Researchers use additives, such as growth factors, to help facilitate cell proliferation and function. Also, researchers are attempting to use electrospun fibers for drug delivery and as wound dressings since the electrospun fibers have high surface area to volume ratio. In both situations, the release of either the additive or the drug needs to be controlled so that the fibers would release the …

The Effect Of Vergence Vision Training On Binocularly Normal Subjects, Henry Talasan

Theses

Vergence is the disjunctive (inward or outward) movement of the eyes that is stimulated by retinal disparity (difference of where an image is projected to the retina and the fovea). A recent randomized clinical trial showed the efficacy of vision therapy for children with the binocular dysfunction known as convergence insufficiency is 73%. However, it is unknown whether binocularly normal persons will have any significant change to their vergence ocular motor system if they participate in vision training sessions. A total of ten (n = 10) binocularly normal persons participated in this study (18 to 28 years of age). A …

Short Term Modification Of Vergence Ramp Eye Movements In The Convergent Direction, Chang Yaramothu

Theses

Prior oculomotor studies have investigated the various effects of short-term modification on vergence, saccadic and smooth pursuit eye movements. Previous vergence studies have concentrated on step modification stimuli. Few have investigated the effects of short-term modification on vergence ramp movements. Thus, this study explores the trends observed within a short-term modification experiment studying smoothly tracking vergence eye movements responses elicited from convergent ramp stimuli. A short-term modification experiment is composed of three phases: baseline, modification and recovery. Baseline and recovery phases contain only test stimuli; whereas, during modification, the subject is presented test and conditioning stimuli in a ratio of …

Rate Alterable Traumatic Brain Injury Device For Rodent Models, Radia Abdul Wahab

Dissertations

Traumatic Brain Injury (TBI) is a physical impact to the head resulting in functional deficits in memory and motor systems. TBI is a prevalent problem occurring in 1.7 million people annually in the United States (Faul et al. 2010). TBIs can differ greatly in terms of the biomechanics of the impact such as magnitude, direction and rate. Indeed, it is likely that the wide range of TBI outcomes may be due to the physical characteristics of the trauma. Studies to date on impact have used injury devices with limited alterable parameters. Therefore, the existing impact studies have considered the effect …

The Effect Of Mechanical Vestibular Stimulation On Muscle Tone And Spasticity In Individuals With Neurological Impairment, Ghaith J. Androwis

Dissertations

In the desire to better understand spasticity mainly in Cerebral Palsy (CP) and to examine vestibular stimulation as a future intervention for .muscle tone reduction, and to be able to describe the change in level of spasticity in subjects with disability and describe interventions effects, a series of experiments are done on children with spasticity. In addition to understanding the otoliths in the vestibular system and their projections, properties and pathways a more important major objective of this work is to validate the changes in otoliths signal caused by vestibular stimulation based on the Equilibrium Point Hypothesis and the inclusion …

Construction And Assessment Of A Computer Graphics-Based Model For Wheelchair Propulsion, Brooke Marie Odle

Dissertations

Upper limb overuse injuries are common in manual wheelchair using persons with spinal cord injury (SCI), especially those with tetraplegia. Biomechanical analyses involving kinetics, kinematics, and muscle mechanics provide an opportunity to identify modifiable risk factors associated with wheelchair propulsion and upper limb overuse injuries that may be used toward developing prevention and treatment interventions. However, these analyses are limited because they cannot estimate muscle forces in vivo. Patient-specific computer graphics-based models have enhanced biomechanical analyses by determining in vivo estimates of shoulder muscle and joint contact forces. Current models do not include deep shoulder muscles. Also, patient-specific models …

In Vitro Modeling And Analysis Of Axon Stretch Growth For The Sustained Growth Of Long Nerve Fibers, Joseph Rocco Loverde

Dissertations

The integration of long nerve fibers throughout the body is distinctive among somatic tissues. Single, individual motor neurons grow to a meter in length or more as they maintain connectivity with sacral areas of the spinal cord from the brain. Similarly, homologous growth also occurs via spinal ganglion neurons within the peripheral nervous system. The most widely studied aspect of nerve development has been the migration and extension of growth cones towards synaptic targets during early development. However, following growth cone extension, axonal fibers continue to grow in synchrony with the expansion of limbs and mit otic tissues throughout childhood …

Differentiating Schizophrenic Patients From Healthy Control; Application Of Machine Learning To Resting State Fmri, Hossein Ebrahimi Nezhad

Theses

In recent years, one analysis approach that has grown in popularity is the use of machine learning algorithms to train classifiers to decode stimuli, mental states, behaviors and other variables of interest from fMRI data. Most of these studies focus on fMRI low frequency oscillations. This study focuses on the amplitude of low-frequency fluctuations (ALFF) and fractional amplitude of low-frequency fluctuations (fALFF). A Voxel-wise analysis is performed on the whole brain for two groups of subjects. A machine learning algorithm is applied to two independent groups of subjects (a total of 160 healthy control and schizophrenic subjects) to classify Schizophrenia …

Mathematically Modeling The Mechanical Constants Of Thoracolumbar Fascia Under Compression, In Vivo, Vrajeshri Patel

Theses

The thoracolumbar fascia (TLF) is a complex structure made of many interconnecting aponeurosis and muscle fascia. It plays a role in posture, stabilizing the lumbosacral spine, load transfer, and respiration. Its complex structure and connections have mostly been observed through cadaveric studies while its mechanical properties have been addressed in only a few studies. Recently, new advances in ultrasound imaging have made it possible to move towards measuring tissue strain. Since this is an in vivo method, mechanical data of tissues in their natural environment allows a more accurate representation of tissue strain. However, many different methods of analyzing ultrasound …

Developing A Labview Based Thermally Stimulated Current (Tsc) Controller To Measure Residual Charge In Electrospinning, Jai Abhishekh Veezhinathan

Theses

Electrospinning is an electrohydrodynamic process for the fabrication of nanofibers which are widely used in therapeutical tissue engineering approaches. It utilizes the potential difference of an electrostatic field to overcome the surface tension of the polymer solution to extrude a fine jet of fluid which deposits on the grounded collector as a nanofiber mat. Using this process, nanofibers with diameters less than a micron can be produced.

Previous studies have shown the presence of residual charge in electrospun nanofibers. The presence and decay of residual charge during cell culture media is still unknown. In an attempt to clarify the presence …

Using The Piezoelectric Backscatter Signal For Remote Sensing Of Neural Signals, Eren Alay

Theses

In recent studies, various methods to sense neural signals are used and new methods for remote sensing of neural signals are being developed. However, there are still major difficulties in building long-term implantable neural interface systems that can reliably record neural activity and serve as the basis of brain-machine interfaces (BMI). Therefore, this research is conducted to design a remote neural sensing system that is based on modulation of the backscatter signal from a piezoelectric element by the neural signals. The hypothesis is that if the neural signal is detected with a simple amplifier and the output of this amplifier …

Finite Element Modeling Of Temperature Elevation Due To Nir Exposure In Neural Tissue, Atabek Can Yucel

Theses

Near infrared (NIR) lasers have been used in various types of medical applications. Heating is one of the most important concerns in the neural tissue when illuminated with NIR light. Rodent models are frequently used to study laser-tissue interactions. As a part of ongoing research project in the neural interface laboratory, direct measurements of temperature in the rat brain cortex as a response to a pulsed sequence of NIR laser beam are available. In this thesis, finite element modeling approach is used to model and simulate the temperature elevation in neural tissue under the effect of NIR laser pulsing. Steady …

Effect Of Scan Time On Resting State Parameters, Dhruti Patel

Theses

In the past decade the interest in studying the spontaneous low-frequency fluctuations (LFF) in a resting-state brain has steadily grown. By measuring LFF (< 0.08 Hz) in blood-oxygen-level-dependent (BOLD) signals, resting-state functional magnetic resonance imaging (rs-fMRI) has proven to be a powerful tool in exploring brain network connectivity and functionality. Rs-fMRI data can be used to organize the brain into resting state networks (RSNs). In this thesis, rs-fMRI data are used to determine the minimum data acquisition time necessary to detect local intrinsic brain activity as a function of both the amplitude of low frequency fluctuations (ALFF) and the fractional amplitude of low frequency fluctuations (fALFF) in BOLD signals in healthy subjects. The data are obtained from 22 healthy subjects to use as a baseline for future rs-fMRI analysis. Voxel-wise analysis is performed on the whole brain, gray matter volume, and two previously established RSNs: the default mode network (DMN) and the visual system network, for all the subjects in this study.

Pearson’s correlation coefficients (r-values) are calculated from each subject. The entire time series for one subject is divided into 31 subsections and the r-values are calculated between each consecutive subsection in a subject. In total, there are 30 r- values. To better understand what the results mean across subjects and within subjects Fisher transformations are applied to the 30 calculated r-values for each subject to get a normal z-distribution. The mean across 22 subjects’ z-values is …

Nir Light Transmission Through Skin And Muscle, Deniz Ozgulbas

Theses

Light has been used extensively in the medical field for both therapeutic and diagnostic applications. Tissue optical window or therapeutic window defines the range of wavelengths where the light has the maximum transmittance through tissue. In this range, absorption and scattering effects are relatively lower when compared to the visible or middle infrared wavelengths. Knowledge of the transmittance through tissue can help determine the effective light intensities in medical applications.

The objective of this thesis is to determine the NIR light transmission through different thicknesses of animal tissue and its spatial spread due to the scattering effect. Primarily pork skin …

Brain Computer Interface Based Neurorehabilitation Technique Using A Commercially Available Eeg Headset, Abhineet Mishra

Theses

Neurorehabilitation has recently been augmented with the use of virtual reality and rehabilitation robotics. In many systems, some known volitional control must exist in order to synchronize the user intended movement with the therapeutic virtual or robotic movement. Brain Computer Interface (BCI) aims to open up a new rehabilitation option for clinical population having no residual movement due to disease or injury to the central or peripheral nervous system. Brain activity contains a wide variety of electrical signals which can be acquired using many invasive and non-invasive acquisition techniques and holds the potential to be used as an input to …

Admittance Control Of The Intelligent Assist Robot Manipulator For People With Duchenne Muscular Dystrophy, Madeline Corrigan

Theses

Duchenne muscular dystrophy (DMD), a neuromuscular disease with a prevalence of 1 in 3500 male births, results in characteristic muscle weakness which is progressive with age and leads to loss of independence. And, in this population, maintaining optimal quality of life depends on the preservation of self-sufficiency. Despite the loss of function, non-ambulant people with DMD retain some muscle strength, just not sufficient strength to overcome the force of gravity. There are a number of upper-limb passive and active orthotic devices that attempt to augment the loss of upper limb function in people with DMD by taking advantage of this …

Fabrication And Evaluation Of A Collagen-Based Fiber-Gel Three-Dimensional Construct For Peripheral Nerve Repair, Mevan Lakmal Siriwardane

Dissertations

Nerve regeneration following a peripheral nerve injury often relies on growth cone- mediated guidance and the presence of Schwann cells to support the regenerating axons and remyelinate portions of denervated nerve pathways. The emphasis of this work is to develop a synthetic nervous tissue construct that contains similar basal lamina or extracellular matrix to peripheral nerve in order to achieve a level of effectiveness in nerve repair and future peripheral nerve regeneration applications. To this end, three- dimensional nervous tissue constructs consisting of type I collagen are fabricated into a composite biomaterial scaffold to promote contact-guided growth of neuronal and …

Quantification Of Neural Substrates Of Vergence System Via Fmri, Yelda Alkan

Dissertations

Vergence eye movement is one of the oculomotor systems which allow depth perception via disconjugate movement of the eyes. Neuroimaging methods such as functional magnetic resonance imaging (fMRI) measure neural activity changes activity in the brain while subjects perform experimental tasks. A rich body of primate investigations on vergence is already established in the neurophysiology literature; on the other hand, there are a limited number of fMRI studies on neural mechanisms behind the vergence system.

The results demonstrated that vergence system shares neural sources and also shows differentiation within the boundaries of frontal eye fields (FEF) and midbrain of the …

Quantification Of Human Motion On Roller Coaster Rides, Chirag Burman

Theses

Case reports have been published of people experiencing symptoms of traumatic brain injury (TBI) and/or ailments of the vascular tissue around the head. These reports pointed towards G-forces, a scalar measure without a specified direction, which represent the measure of the acceleration of an object divided by acceleration caused by gravity (9.81 m/s²), as a cause of said injuries. Research has been conducted on quantifying the G-forces experienced while on roller coasters, as well as the change in heart rate. However these studies have not been able to show a link between roller-coasters and symptoms.

This thesis aims …

Fuzzy Logic For Task Space Telemanipulation Of A Five Fingered Robotic Hand, Raaghavann Srinivasan

Theses

This work presents a fuzzy logic based HandyMan (Hand gesture commands for grasping and manipulation) system to recognize the operator's hand gestures during task space telemanipulation. A combination of joint positions may be shared between at least two manipulation gestures. To avoid misinterpretation of gestures by the gesture recognition system, six new manipulation gestures were introduced. The gestures are produced by the user wearing a CyberGlove™.

This system replaces the previous HandyMan gesture recognition method. The output of the fuzzy system drives the state machines to implement the gestures with the robot hand.

The experimental results show that the proposed …

Diffuse Axonal Injury Effect On Myelinating Cells And Axons, Jennifer Alison Zalk

Theses

There is no supporting evidence whether myelin degeneration in diffuse axonal injury (DAI) of the white matter is due to death of myelinating oligodendrocytes or secondary axotomy. Cortical neurons are not able to remain healthy in culture to have their axons myelinated. Dorsal root ganglion (DRG) neurons have been shown to be myelinated by cortical oligodendrocytes in culture. An in vitro stretch injury model was used to analyze the DRG axon pathology during and after injury. DRG myelinating Schwann cells are analyzed to demonstrate what is expected from injury to oligodendrocytes. DRG axons demonstrated a high tolerance to stretch …

Virtual Reality Visual Feedback And Its Effect On Brain Excitability, Soha Saleh

Dissertations

This dissertation examines manipulation of visual feedback in virtual reality (VR) to increase excitability of distinct neural networks in the sensorimotor cortex. The objective is to explore neural responses to visual feedback of motor activities performed in complex virtual environments during functional magnetic resonance imaging (fMRI), and to identify sensory manipulations that could further optimize VR rehabilitation of persons with hemiparesis. In addition, the effects of VR therapy on brain reorganization are investigated. An MRI-compatible VR system is used to provide subjects with online visual feedback of their hand movement. First, the author develops a protocol to analyze variability in …