Biomedical Engineering and Bioengineering Commons^™

A Large-Scale Mathematical Model Of The Rat Pulmonary Circulation And The Effect Of Chronic Hypoxia, Loolu Rafeeq

Master's Theses (2009 -)

Mathematical models are useful for developing understanding of the behavior of complex biological systems. Recent work on a “physiome” project is aimed at using computational modeling to analyze integrative biological function by developing a simulation system for hypothesis testing (Borg & Hunter, 2003). To date, extensive work on cardiovascular, endocrine and nervous system models has been undertaken. Our objective here is to contribute to this effort by further developing a comprehensive integrative model of the pulmonary circulation. A computational model of the dog pulmonary circulation was originally developed by Haworth et al. (Haworth S. T., 1996; Haworth, Linehan, Bronikowski, & …

Identification Of Proper And Common Names In The Anterior Temporal Lobe: An Fmri Study, Usha Tadimeti

Master's Theses (2009 -)

Temporal lobe epilepsy is a neurological disease that affects millions of individuals worldwide. They are usually treated through surgical resection of portions of the anterior temporal lobe (ATL). Surgical resection is effective for seizure control, but produces language and verbal memory deficits such as anomic aphasia, which adversely affects an individual's quality of life. The purpose of this study was to develop a functional MRI protocol for mapping the function of ATL in healthy subjects, and to better understand the role of the ATL and other regions of the semantic system. Such a protocol may ultimately be used by surgeons …

Integration Of Eeg-Fmri In An Auditory Oddball Paradigm Using Joint Independent Component Analysis, Jain Mangalathu Arumana

Dissertations (1934 -)

The integration of event-related potential (ERP) and functional magnetic resonance imaging (fMRI) can contribute to characterizing neural networks with high temporal and spatial resolution. The overall objective of this dissertation is to determine the sensitivity and limitations of joint independent component analysis (jICA) within-subject for integration of ERP and fMRI data collected simultaneously in a parametric auditory oddball paradigm. The main experimental finding in this work is that jICA revealed significantly stronger and more extensive activity in brain regions associated with the auditory P300 ERP than a P300 linear regression analysis, both at the group level and within-subject. The results …

Quantitative Biomechanical Evaluation Of Upper Extremity: Strain Behavior Of The Humerus Diaphysis Under Loading, Prateek Grover

Dissertations (1934 -)

While mechanical behavior of the adult human lower extremity long bones under loading has been studied extensively, the same is not true for the adult human humerus. Mechanical data reported for cadaveric humeri and anatomic humerus models are limited to stiffness and rigidity. Strain characteristics of the humerus diaphysis as a function of loading provide a valuable addition to the currently limited knowledge. The objective of this dissertation was to accomplish this goal, using numerical/finite element (FE) methods applied to a standard anatomic humerus model (Reference-Humerus) that was developed from the NIH Visible Human Project for this purpose. Four phases …

Identification Of Hemodynamically Optimal Coronary Stent Designs Based On Vessel Caliber, Timothy J. Gundert, Alison L. Marsden, Weiguang Yang, David S. Marks, John F. Ladisa

Biomedical Engineering Faculty Research and Publications

Coronary stent design influences local patterns of wall shear stress (WSS) that are associated with neointimal growth, restenosis, and the endothelialization of stent struts. The number of circumferentially repeating crowns N_C for a given stent de- sign is often modified depending on the target vessel caliber, but the hemodynamic implications of altering N_C have not previously been studied. In this investigation, we analyzed the relationship between vessel diameter and the hemodynamically optimal N_C using a derivative-free optimization algorithm coupled with computational fluid dynamics. The algorithm computed the optimal vessel diameter, defined as minimizing the area of stent-induced …

Examining Lower Extremity Motor Activity Using Magnetoencephalography, Ruth M. Swedler

Master's Theses (2009 -)

The role of the cortex during locomotion remains unclear, but recent advances in neural imaging technologies have aided in developing ways to measure brain activity during motor tasks. One method is by measuring activations produced by neural oscillations which have been associated with a variety of human behaviors, from sleep and rest to cognitive actions and movement. The physiological and functional methods in which oscillations contribute to cortical control are still largely unknown. In this study, we aim to expand that knowledge by examining human cortical activity in the sensory and motor cortices during pedaling using magnetoencephalography (MEG). We hypothesized …

Adaptive Optics Scanning Ophthalmoscopy With Annular Pupils, Yusufu N. Sulai, Alfredo Dubra

Biomedical Engineering Faculty Research and Publications

Annular apodization of the illumination and/or imaging pupils of an adaptive optics scanning light ophthalmoscope (AOSLO) for improving transverse resolution was evaluated using three different normalized inner radii (0.26, 0.39 and 0.52). In vivo imaging of the human photoreceptor mosaic at 0.5 and 10° from fixation indicates that the use of an annular illumination pupil and a circular imaging pupil provides the most benefit of all configurations when using a one Airy disk diameter pinhole, in agreement with the paraxial confocal microscopy theory. Annular illumination pupils with 0.26 and 0.39 normalized inner radii performed best in terms of the narrowing …

Robotic Resistance Treadmill Training Improves Locomotor Function In Human Spinal Cord Injury: A Pilot Study, Ming Wu, Jill M. Landry, Brian D. Schmit, T. George Hornby, Sheng-Che Yen

Biomedical Engineering Faculty Research and Publications

Objective

To determine whether cable-driven robotic resistance treadmill training can improve locomotor function in humans with incomplete spinal cord injury (SCI).

Design

Repeated assessment of the same patients with crossover design.

Setting

Research units of rehabilitation hospitals in Chicago.

Participants

Patients with chronic incomplete SCI (N=10) were recruited to participate in this study.

Interventions

Subjects were randomly assigned to 1 of 2 groups. One group received 4 weeks of assistance training followed by 4 weeks of resistance training, while the other group received 4 weeks of resistance training followed by 4 weeks of assistance training. Locomotor training was provided by …

Repeatability Of In Vivo Parafoveal Cone Density And Spacing Measurements, Robert Garrioch, Christopher S. Langlo, Adam M. Dubis, Robert F. Cooper, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Purpose. To assess the repeatability and measurement error associated with cone density and nearest neighbor distance (NND) estimates in images of the parafoveal cone mosaic obtained with an adaptive optics scanning light ophthalmoscope (AOSLO).

Methods. Twenty-one participants with no known ocular pathology were recruited. Four retinal locations, approximately 0.65[degrees] eccentricity from the center of fixation, were imaged 10 times in randomized order with an AOSLO. Cone coordinates in each image were identified using an automated algorithm (with or without manual correction) from which cone density and NND were calculated. Owing to naturally occurring fixational instability, the 10 images recorded from …

Within-Subject Joint Independent Component Analysis Of Simultaneous Fmri/Erp In An Auditory Oddball Paradigm, Jain Mangalathu-Arumana, Scott A. Beardsley, E. Liebenthal

Biomedical Engineering Faculty Research and Publications

The integration of event-related potential (ERP) and functional magnetic resonance imaging (fMRI) can contribute to characterizing neural networks with high temporal and spatial resolution. This research aimed to determine the sensitivity and limitations of applying joint independent component analysis (jICA) within-subjects, for ERP and fMRI data collected simultaneously in a parametric auditory frequency oddball paradigm. In a group of 20 subjects, an increase in ERP peak amplitude ranging 1–8 μV in the time window of the P300 (350–700 ms), and a correlated increase in fMRI signal in a network of regions including the right superior temporal and supramarginal gyri, was …

Reducing The Radiation Dose To Women Receiving Cardiac Ct Scans, Michael Hoppe

Master's Theses (2009 -)

This thesis aims to quantify the reduction in radiation dose deposited in glandular breast tissue achieved by using tilted gantry acquisition during cardiac CT scans. Previous work by Halpern et al. suggested using tilted acquisition parallel to the long axis of the patient’s heart. However, for a larger portion of the population this is not feasible due to the design of current scanners (which are limited to maximum tilt angles of 30 degrees). This study investigated the potential dose reduction and image quality effects at commercially available tilt angles between 0-30 degrees through simulation and experimental studies.

Upon IRB approval, …

Quantifying The Impact Of Altered Hemodynamics And Vascular Biomechanics To Changes In Structure And Function In Native And Corrected Aortic Coarctation, Arjun Menon

Dissertations (1934 -)

Coarctation of the aorta (CoA) is associated with substantial cardiovascular morbidities despite successful treatment through surgical or catheter-based intervention. Although specific mechanisms leading to these morbidities remain elusive, abnormal hemodynamics and vascular biomechanics are implicated. We used a novel animal model that facilitates quantification of CoA-induced hemodynamic and vascular biomechanics alterations and their impact on vascular structure and function, independent of genetic or confounding factors. Rabbits underwent thoracic CoA at 10 weeks of age (~9 human years) to induce a 20 mmHg blood pressure (BP) gradient using permanent or dissolvable suture thereby replicating untreated and corrected CoA. Computational fluid dynamics …

Advanced Visualization And Intuitive User Interface Systems For Biomedical Applications, David Quam

Master's Theses (2009 -)

Modern scientific research produces data at rates that far outpace our ability to comprehend and analyze it. Such sources include medical imaging data and computer simulations, where technological advancements and spatiotemporal resolution generate increasing amounts of data from each scan or simulation. A bottleneck has developed whereby medical professionals and researchers are unable to fully use the advanced information available to them. By integrating computer science, computer graphics, artistic ability and medical expertise, scientific visualization of medical data has become a new field of study. The objective of this thesis is to develop two visualization systems that use advanced visualization, …

Abnormal Neuromuscular Fatigue And Motor Performance Of The Knee Extensors Post Stroke, Henry Kuhnen

Master's Theses (2009 -)

Stroke causes paresis in leg muscles, such as the knee extensors, that significantly impairs motor control and function during tasks such as walking. Reduced endurance and increased kinematic asymmetries during walking over time indicate paretic musculature may fatigue more quickly than non-paretic musculature. The primary purpose of this study was to identify abnormalities in neuromuscular fatigue (reduction in force over time) of the paretic knee extensors and associate them with motor performance.

We investigated the effects of repeated six second isometric submaximal (30% of maximum voluntary contraction) knee extensor fatiguing contractions on task failure and motor performance in ten chronic …

Adding Ros Scavengers To Cold K+ Cardioplegia Reduces Superoxide Emission During 2 H Global Cold Cardiac Ischemia, Mohammed Aldakkak, David F. Stowe, James S. Heisner, Matthias L. Riess, Amadou K.S. Camara

Biomedical Engineering Faculty Research and Publications

We reported that the combination of reactive oxygen species (ROS) quenchers Mn(III) tetrakis (4-benzoic acid) porphyrin (MnTBAP), catalase, and glutathione (MCG) given before 2 hours cold ischemia better protected cardiac mitochondria against cold ischemia and warm reperfusion (IR)-induced damage than MnTBAP alone. Here, we hypothesize that high K⁺ cardioplegia (CP) plus MCG would provide added protection of mitochondrial bioenergetics and cardiac function against IR injury. Using fluorescence spectrophotometry, we monitored redox balance, ie reduced nicotinamide adenine dinucleotide and flavin adenine dinucleotide (NADH/FAD), superoxide (O₂ ^•−), and mitochondrial Ca²⁺ (m[Ca²⁺]) in the left ventricular free …

Subclinical Photoreceptor Disruption In Response To Severe Head Trauma, Kimberly E. Stepien, Wanda M. Martinez, Adam M. Dubis, Robert F. Cooper, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Commotio retinae is a transient opacification of the retina due to outer retinal disruption occurring in a contrecoup fashion after blunt trauma.Histological studies in animals and humans after ocular blunt trauma have revealed that disruption occurs at the level of the photoreceptor outer segments and retinal pigment epithelium.Recent reports using optical coherence tomography (OCT) have shown detectable disruption at the level of the photoreceptor inner segment/outer segment junction and retinal pigment epithelium and that these changes may be reversible over time with restoration of normal outer retinal architecture.However, the resolution of existing OCT technology may not be sensitive enough to …

The Latest Lessons Learned From Retrieval Analyses Of Ultra-High Molecular Weight Polyethylene, Metal-On-Metal, And Alternative Bearing Total Disc Replacements, Steven M. Kurtz, Jeffrey M. Toth, Ryan Siskey, Lauren Ciccarelli, Daniel Macdonald, Jorge Isaza, Todd Lanman, Ilona Punt, Marla Marla Steinbeck, Jan Goffin, André Van Ooij

Biomedical Engineering Faculty Research and Publications

Knowledge regarding the in vivo performance and periprosthetic tissue response of cervical and lumbar total disc replacements (TDRs) continues to expand. This review addresses the following 4 main questions: (1) What are the latest lessons learned from using polyethylene in large joints and how are they relevant to current TDRs? (2) What are the latest lessons learned regarding adverse local tissue reactions from metal-on-metal cobalt-chrome bearings in large joints and how are they relevant to current TDRs? (3) What advancements have been made in understanding the in vivo performance of alternative biomaterials, such as stainless steel and polycarbonate urethane, for …

Persistent Vascular Collagen Accumulation Alters Hemodynamic Recovery From Chronic Hypoxia, Diana M. Tabima, Alejandro Roldan-Alzate, Zhijie Wang, Timothy A. Hacker, Robert C. Molthen, Naomi C. Chesler

Biomedical Engineering Faculty Research and Publications

Pulmonary arterial hypertension (PAH) is caused by narrowing and stiffening of the pulmonary arteries that increase pulmonary vascular impedance (PVZ). In particular, small arteries narrow and large arteries stiffen. Large pulmonary artery (PA) stiffness is the best current predictor of mortality from PAH. We have previously shown that collagen accumulation leads to extralobar PA stiffening at high strain (Ooi et al. 2010). We hypothesized that collagen accumulation would increase PVZ, including total pulmonary vascular resistance (Z₀), characteristic impedance (Z_C), pulse wave velocity (PWV) and index of global wave reflections (P_b/P …

Relationship Between The Foveal Avascular Zone And Foveal Pit Morphology, Adam M. Dubis, Benjamin R. Hansen, Robert F. Cooper, Joseph Beringer, Alfredo Dubra, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Purpose. To assess the relationship between foveal pit morphology and size of the foveal avascular zone (FAZ).

Methods. Forty-two subjects were recruited. Volumetric images of the macula were obtained using spectral domain optical coherence tomography. Images of the FAZ were obtained using either a modified fundus camera or an adaptive optics scanning light ophthalmoscope. Foveal pit metrics (depth, diameter, slope, volume, and area) were automatically extracted from retinal thickness data, whereas the FAZ was manually segmented by two observers to extract estimates of FAZ diameter and area.

Results. Consistent with previous reports, the authors observed significant variation in foveal pit …

Damage To Mitochondrial Complex I During Cardiac Ischemia Reperfusion Injury Is Reduced Indirectly By Anti-Anginal Drug Ranolazine, Ashish K. Gadicherla, David F. Stowe, William E. Antholine, Meiying Yang, Amadou K.S. Camara

Biomedical Engineering Faculty Research and Publications

Ranolazine, an anti-anginal drug, is a late Na⁺ channel current blocker that is also believed to attenuate fatty acid oxidation and mitochondrial respiratory complex I activity, especially during ischemia. In this study, we investigated if ranolazine's protective effect against cardiac ischemia/reperfusion (IR) injury is mediated at the mitochondrial level and specifically if respiratory complex I (NADH Ubiquinone oxidoreductase) function is protected. We treated isolated and perfused guinea pig hearts with ranolazine just before 30 min ischemia and then isolated cardiac mitochondria at the end of 30 min ischemia and/or 30 min ischemia followed by 10 min reperfusion. We utilized …

Enhanced Charge-Independent Mitochondrial Free Ca2+ And Attenuated Adp-Induced Nadh Oxidation By Isoflurane: Implications For Cardioprotection, Bhawana Agarwal, Amadou K.S. Camara, David F. Stowe, Zeljko J. Bosnjak, Ranjan K. Dash

Biomedical Engineering Faculty Research and Publications

Modulation of mitochondrial free Ca^{2 +} ([Ca^{2 +}]_m) is implicated as one of the possible upstream factors that initiates anesthetic-mediated cardioprotection against ischemia–reperfusion (IR) injury. To unravel possible mechanisms by which volatile anesthetics modulate [Ca^{2 +}]_m and mitochondrial bioenergetics, with implications for cardioprotection, experiments were conducted to spectrofluorometrically measure concentration-dependent effects of isoflurane (0.5, 1, 1.5, 2 mM) on the magnitudes and time-courses of [Ca^{2 +}]_m and mitochondrial redox state (NADH), membrane potential (ΔΨ_m), respiration, and matrix volume. Isolated mitochondria from rat hearts were energized with 10 …

Locomotor Adaptation To Resistance During Treadmill Training Transfers To Overground Walking In Human Sci, Sheng-Che Yen, Brian D. Schmit, Jill M. Landry, Heidi Roth, Ming Wu

Biomedical Engineering Faculty Research and Publications

Treadmill training has been used as a promising technique to improve overground walking in patients with spinal cord injury (SCI). Previous findings showed that a gait pattern may adapt to a force perturbation during treadmill training and show aftereffects following removal of the force perturbation. We hypothesized that aftereffects would transfer to overground walking to a greater extent when the force perturbation was resisting rather than assisting leg swing during treadmill training. Ten subjects with incomplete SCI were recruited into this study for two treadmill training sessions: one using swing resistance and the other using swing assistance during treadmill stepping. …

An Empirical Method For Correcting The Detector Spectral Response In Energy-Resolved Ct, Taly Gilat Schmidt

Biomedical Engineering Faculty Research and Publications

Energy-resolving photon-counting detectors have the potential for improved material decomposition compared to dual-kVp approaches. However, material decomposition accuracy is limited by the nonideal spectral response of the detectors. This work proposes an empirical method for correcting the nonideal spectral response, including spectrum-tailing effects. Unlike previous correction methods which relied on synchrotron measurements, the proposed method can be performed on the scanner. The proposed method estimates a spectral-response matrix by performing x-ray projection measurements through a range of known thicknesses of two or more calibration materials. Once estimated, the spectral-response matrix is incorporated into conventional material decomposition algorithms. A simulation study …

Biomechanics, Brooke A. Slavens, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Biomechanics is a vast discipline within the field of Biomedical Engineering. It explores the underlying mechanics of how biological and physiological systems move. It encompasses important clinical applications to address questions related to medicine using engineering mechanics principles. Biomechanics includes interdisciplinary concepts from engineers, physicians, therapists, biologists, physicists, and mathematicians. Through their collaborative efforts, biomechanics research is ever changing and expanding, explaining new mechanisms and principles for dynamic human systems. Biomechanics is used to describe how the human body moves, walks, and breathes, in addition to how it responds to injury and rehabilitation. Advanced biomechanical modeling methods, such as inverse …

Upper Extremity Kinematics In Children With Spinal Cord Injury During Wheelchair Mobility, Brooke Slavens, Alyssa Paul, Adam Graf, Joseph Krzak, Lawrence Vogel, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

No abstract provided.

Foot And Ankle Motion Analysis Using Dynamic Radiographic (Fluoroscopic) Imaging, Benjamin Mchenry, Jason T. Long, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

No abstract provided.

Estimation Of Organ And Effective Dose Due To Compton Backscatter Security Scans, Michael Hoppe, Taly Gilat Schmidt

Biomedical Engineering Faculty Research and Publications

Purpose: To estimate organ and effective radiation doses due to backscatter security scanners using Monte Carlo simulations and a voxelized phantom set. Methods: Voxelized phantoms of male and female adults and children were used with the GEANT4 toolkit to simulate a backscatter security scan. The backscatter system was modeled based on specifications available in the literature. The simulations modeled a 50 kVp spectrum with 1.0 mm-aluminum-equivalent filtration and a previously measured exposure of approximately 4.6 μR at 30 cm from the source. Photons and secondary interactions were tracked from the source until they reached zero kinetic energy or exited from …

Dataglove Measurement Of Joint Angles In Sign Language Handshapes, Petra Eccarius, Rebecca Bour, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

In sign language research, we understand little about articulatory factors involved in shaping phonemic boundaries or the amount (and articulatory nature) of acceptable phonetic variation between handshapes. To date, there exists no comprehensive analysis of handshape based on the quantitative measurement of joint angles during sign production. The purpose of our work is to develop a methodology for collecting and visualizing quantitative handshape data in an attempt to better understand how handshapes are produced at a phonetic level. In this pursuit, we seek to quantify the flexion and abduction angles of the finger joints using a commercial data glove (CyberGlove; …

Remembering Forward: Neural Correlates Of Memory And Prediction In Human Motor Adaptation, Robert A. Scheidt, Janice Zimbelman, Nicole M.G. Salowitz, Aaron J. Suminski, Kristine M. Mosier, James Houk, Lucia Simo

Biomedical Engineering Faculty Research and Publications

We used functional MR imaging (FMRI), a robotic manipulandum and systems identification techniques to examine neural correlates of predictive compensation for spring-like loads during goal-directed wrist movements in neurologically-intact humans. Although load changed unpredictably from one trial to the next, subjects nevertheless used sensorimotor memories from recent movements to predict and compensate upcoming loads. Prediction enabled subjects to adapt performance so that the task was accomplished with minimum effort. Population analyses of functional images revealed a distributed, bilateral network of cortical and subcortical activity supporting predictive load compensation during visual target capture. Cortical regions – including prefrontal, parietal and hippocampal …

Assessing Spinal Motion At Different Fusion Levels In Adolescents With Idiopathic Scoliosis, Sahar Hassani, Adam Graf, Joseph Krzak, K. Hammerberg, P. Sturm, P. Gupta, M. Riordan, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

No abstract provided.