Engineering Commons^™

A Mechanistic Model Of Early Fcεri Signaling: Lipid Rafts And The Question Of Protection From Dephosphorylation, Dipak Barua, Byron Goldstein

Chemical and Biochemical Engineering Faculty Research & Creative Works

We present a model of the early events in mast cell signaling mediated by FcεRI where the plasma membrane is composed of many small ordered lipid domains (rafts), surrounded by a non-order region of lipids consisting of the remaining plasma membrane. The model treats the rafts as transient structures that constantly form and breakup, but that maintain a fixed average number per cell. The rafts have a high propensity for harboring Lyn kinase, aggregated, but not unaggregated receptors, and the linker for the activation of T cells (LAT). Phosphatase activity in the rafts is substantially reduced compared to the nonraft …

Computational Identification Of Adaptive Mutants Using The Vert System, James Winkler, Katy Kao

Faculty Publications

BackgroundEvolutionary dynamics of microbial organisms can now be visualized using the Visualizing Evolution in Real Time (VERT) system, in which several isogenic strains expressing different fluorescent proteins compete during adaptive evolution and are tracked using fluorescent cell sorting to construct a population history over time. Mutations conferring enhanced growth rates can be detected by observing changes in the fluorescent population proportions.ResultsUsing data obtained from several VERT experiments, we construct a hidden Markov-derived model to detect these adaptive events in VERT experiments without external intervention beyond initial training. Analysis of annotated data revealed that the model achieves consensus with human annotation …

Brazel, Christopher S.: Fundamental Principles Of Polymeric Materials (Book Review), Jeffrey H. Glans

Chemistry & Physics Faculty Publications

Book review by Jeffrey H. Glans:

Brazel, Christopher S. and Stephen L. Rosen. Fundamental principles of polymeric materials. 3rd ed. Wiley, 2012.

ISBN 9780470505427

Gas Adsorption In Novel Environments, Including Effects Of Pore Relaxation, W. Milton Cole, Silvina M. Gatica, Hye Young Kim, Angela D. Lueking, Sarmishtha Sircar

Chemical and Biochemical Engineering Faculty Research & Creative Works

Adsorption experiments have been interpreted frequently with simplified model geometries, such as ideally flat surfaces and slit or cylindrical pores. Recent explorations of unusual environments, such as fullerenes and metal-organic-framework materials, have led to a broadened scope of experimental, theoretical and simulation investigations. This paper reviews a number of such studies undertaken by our group. Among the topics receiving emphasis are these: universality of gas uptake in pores, relaxation of a porous absorbent due to gas uptake and the novel phases of gases on a single nanotube, all of which studies have been motivated by recent experiments.

Fabrication Of Cao-Nao-Sio2/Tio2 Scaffolds For Surgical Applications, A. W. Wren, A. Coughlan, K. E. Smale, S. T. Misture, B. P. Mahon, O. M. Clarkin, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

A series of titanium (Ti) based glasses were formulated (0.62 SiO₂-0.14 Na₂O-0.24 CaO, with 0.05 mol% TiO₂ substitutions for SiO₂) to develop glass/ceramic scaffolds for bone augmentation. Glasses were initially characterised using X-ray diffraction (XRD) and particle size analysis, where the starting materials were amorphous with 4.5 μm particles. Hot stage microscopy and high temperature XRD were used to determine the sintering temperature (̃700 °C) and any crystalline phases present in this region (Na₂Ca₃Si₆O₁₆, combeite and quartz). Hardness testing revealed that the Ti-free control (ScC- …

Incorporation Of Catalytic Dehydrogenation Into Fischer-Tropsch Synthesis To Significantly Reduce Carbon Dioxide Emissions, Gerald P. Huffman

Chemical and Materials Engineering Faculty Patents

A new method of producing liquid transportation fuels from coal and other hydrocarbons that significantly reduces carbon dioxide emissions by combining Fischer-Tropsch synthesis with catalytic dehydrogenation is claimed. Catalytic dehydrogenation (CDH) of the gaseous products (C1-C4) of Fischer-Tropsch synthesis (FTS) can produce large quantities of hydrogen while converting the carbon to multi-walled carbon nanotubes (MWCNT). Incorporation of CDH into a FTS-CDH plant converting coal to liquid fuels can eliminate all or most of the CO₂ emissions from the water-gas shift (WGS) reaction that is currently used to elevate the H₂ level of coal-derived syngas for FTS. Additionally, the …

Beyond Gel Electrophoresis: Microfluidic Separations, Fluorescence Burst Analysis, And Dna Stretching, Kevin D. Dorfman, Scott B. King, Daniel W. Olson, Joel D. P. Thomas, Douglas R. Tree

Faculty Publications

This review addresses methods for obtaining sequence information directly from unamplified genomic length DNA. Our generic starting point is a large piece of DNA that contains many thousands of base pairs (kilobase pairs, kbp) or even millions of base pairs (megabase pairs, Mbp). We would like to determine the genomic distance between two repeats of a given sequence, indicated by the red dots on the coiled DNA molecule in Figure 1. Let us consider the case where these sequences are restriction sites, which can be selectively cut using proteins known as restriction enzymes. For decades, gel electrophoresis served as the …

Inactivation Of Bacterial Opportunistic Skin Pathogens By Nonthermal Dc-Operated Afterglow Atmospheric Plasma, L. C. Heller, C. M. Edelblute, A. M. Mattson, X. Hao, J. F. Kolb

Bioelectrics Publications

AIMS: Multidrug-resistant opportunistic pathogens are clinically significant and require the development of new antimicrobial methods. In this study, Acinetobacter baumannii, Pseudomonas aeruginosa and Staphylococcus aureus cells were exposed to atmospheric plasma on agar plates and in vitro on porcine skin for the purpose of testing bacterial inactivation.

METHODS AND RESULTS: Microbial inactivation at varying exposure durations was tested using a nonthermal plasma jet generated with a DC voltage from ambient air. The observed reduction in colony forming units was quantified as log₁₀ reductions.

CONCLUSIONS: Direct plasma exposure significantly inactivated seeded bacterial cells by approx. 6 log_{10 …}

Thiol Reactive Probes And Chemosensors, Robert M. Strongin, Lovemore Hakuna, Hanjing Peng, Weixuan Chen, Yunfeng Cheng, Binghe Wang

Chemistry Faculty Publications and Presentations

Thiols are important molecules in the environment and in biological processes. Cysteine (Cys), homocysteine (Hcy), glutathione (GSH) and hydrogen sulfide (H2S) play critical roles in a variety of physiological and pathological processes. The selective detection of thiols using reaction-based probes and sensors is very important in basic research and in disease diagnosis. This review focuses on the design of fluorescent and colorimetric probes and sensors for thiol detection. Thiol detection methods include probes and labeling agents based on nucleophilic addition and substitution, Michael addition, disulfide bond or Se-N bond cleavage, metal-sulfur interactions and more. Probes for H2S are based on …

Optimization Of Biodiesel Production Plants, Nghi T. Nguyen

Department of Chemical and Biomolecular Engineering: Theses and Student Research

A conventional biodiesel plant utilizing two distillation columns to purify unreacted reactants and products is considered in this study. Thermodynamic analyses are used to assess the performance of the existing distillation columns, and reduce the costs of operation by appropriate retrofits in a biodiesel production plant. After the retrofits, the overall exergy loss for the two columns has decreased from 2430.87 kW to 1674.12 kW.

A reactive distillation is developed for esterification of lauric acid with methanol using equilibrium and nonequilibrium models. Equilibrium modeling dominated during last few decades due to their straightforward mathematical modeling. In reality, separation depends on …

Development Of A Ground Based Remote Sensing Approach For Direct Evaluation Of Aerosol-Cloud Interaction, Bomidi Lakshmi Madhavan, Yuzhe He, Yonghua Wu, Barry Gross, Fred Moshary, Samir Ahmed

Publications and Research

The possible interaction and modification of cloud properties due to aerosols is one of the most poorly understood mechanisms within climate studies, resulting in the most significant uncertainty as regards radiation budgeting. In this study, we explore direct ground based remote sensing methods to assess the Aerosol-Cloud Indirect Effect directly, as space-borne retrievals are not directly suitable for simultaneous aerosol/cloud retrievals. To illustrate some of these difficulties, a statistical assessment of existing multispectral imagers on geostationary (e.g., GOES)/Moderate Resolution Imaging Spectroradiometer (MODIS) satellite retrievals of the Cloud Droplet Effective Radius (Reff) showed significant biases especially at larger solar zenith angles, …

3d Differentiation Of Neural Stem Cells In Macroporous Photopolymerizable Hydrogel Scaffolds, Nic Leipzig

Chemical, Biomolecular, and Corrosion Engineering Faculty Research

Neural stem/progenitor cells (NSPCs) are the stem cell of the adult central nervous system (CNS). These cells are able to differentiate into the major cell types found in the CNS (neurons, oligodendrocytes, astrocytes), thus NSPCs are the mechanism by which the adult CNS could potentially regenerate after injury or disorder. Microenviromental factors are critical for guiding NSPC differentiation and are thus important for neural tissue engineering. In this study, D-mannitol crystals were mixed with photocrosslinkable methacrylamide chitosan (MAC) as a porogen to enhance pore size during hydrogel formation. D-mannitol was admixed to MAC at 5, 10 and 20 wt% D-mannitol …

Fabrication And Degradation Of Electrospun Scaffolds From L-Tyrosine Based Polyurethane Blends For Tissue Engineering Applications, Lingyun Liu

Chemical, Biomolecular, and Corrosion Engineering Faculty Research

It is important to control the degradation rate of a tissue-engineered scaffold so that the scaffold will degrade in an appropriate matching rate as the tissue cells grow in. A set of potential tissue engineering scaffolds with controllable rates of degradation were fabricated from blends of two biocompatible, biodegradable L-tyrosine-based polyurethanes (PEG1000-HDI-DTH and PCL1250-HDI-DTH) using the electrospinning process. The scaffolds were characterized by mat morphology, fiber diameter, diameter distribution, pore size, and hydrolytic degradation behavior. The majority of the scaffolds, despite having radically different chemical compositions, possessed no statistical difference with pore sizes and fiber diameters. The degradation pattern observed …

Rat Brain Pro-Oxidant Effects Of Peripherally Administered 5 Nm Ceria 30 Days After Exposure, Sarita S. Hardas, Rukhsana Sultana, Govind Warrier, Mo Dan, Rebecca L. Florence, Peng Wu, Eric A. Grulke, Michael T. Tseng, Jason M. Unrine, Uschi M. Graham, Robert A. Yokel, D. Allan Butterfield

Chemistry Faculty Publications

The objective of this study was to determine the residual pro-or anti-oxidant effects in rat brain 30 days after systemic administration of a 5 nm citrate-stabilized ceria dispersion. A ∼4% aqueous ceria dispersion was iv-infused (0 or 85 mg/kg) into rats which were terminated 30 days later. Ceria concentration, localization, and chemical speciation in the brain was assessed by inductively coupled plasma mass spectrometry (ICP-MS), light and electron microscopy (EM), and electron energy loss spectroscopy (EELS), respectively. Pro- or anti-oxidant effects were evaluated by measuring levels of protein carbonyls (PC), 3-nitrotyrosine (3NT), and protein-bound-4-hydroxy-2-trans-nonenal (HNE) in the hippocampus, cortex, and …

Developments On Wetting Effects In Microfluidic Slug Flow, Rafael M. Santos, Masahiro Kawaji

Faculty Publications and Scholarship

Wetting effects form a dimension of fluid dynamics that becomes predominant, precisely controllable and possibly useful at the micro-scale. Microfluidic multiphase flow patterns, including size, shape and velocity of fluidic particles, and mass and heat transfer rates are affected by wetting properties of microchannel walls and surface tensions forces between fluid phases. The novelty of this field, coupled to difficulties in experimental design and measurements, means that literature results are scarce and scientific understanding is incomplete. Numerical methods developed recently have enabled a shortcut in obtaining results that can be perceived realistic, and that offer insight otherwise not possible. In …

Incorporation Of Catalytic Dehydrogenation Into Fischer-Tropsch Synthesis To Lower Carbon Dioxide Emissions, Gerald P. Huffman

Chemical and Materials Engineering Faculty Patents

A method for producing liquid fuels includes the steps of gasifying a starting material selected from a group consisting of coal, biomass, carbon nanotubes and mixtures thereof to produce a syngas, subjecting that syngas to Fischer-Tropsch synthesis (FTS) to produce a hyrdrocarbon product stream, separating that hydrocarbon product stream into C1-C4 hydrocarbons and C5+ hydrocarbons to be used as liquid fuels and subjecting the C1-C4 hydrocarbons to catalytic dehydrogenation (CDH) to produce hydrogen and carbon nanotubes. The hydrogen produced by CDH is recycled to be mixed with the syngas incident to the FTS reactor in order to raise the hydrogen …

Developing Novel Prognostic Biomarkers For Multivariate Fracture Risk Prediction Algorithms, Ernest K. Poku, Mark R. Towler, Niamh M. Cummins, Jeff D. Newman

Chemical and Biochemical Engineering Faculty Research & Creative Works

Multivariate prediction algorithms such as FRAX® and QFracture Scores provide an opportunity for new prognostic biomarkers to be developed and incorporated, potentially leading to better fracture prediction. As more research is conducted into these novel biomarkers, a number of factors need to be considered for their successful development for inclusion in these algorithms. In this review, we describe two well-known multivariate prediction algorithms for osteoporosis fracture risk applicable to the UK population, FRAX and QFracture Scores, and comment on the current prognostic tools available for fracture risk; dual X-ray assessment, quantitative ultrasonography, and genomic/biochemical markers. We also highlight the factors …

Effects Of Thiophene Units On Substituted Benzothiadiazole And Benzodithiophene Copolymers For Photovoltaic Applications, Ping Ding, Yingping Zou, Cheng-Che Chu, Dequan Xiao, Chain-Shu Hsu

Chemistry and Chemical Engineering Faculty Publications

Two conjugated copolymers, P1 and P2, comprising of benzodithiophene and 5, 6-dioctyloxy-benzothiadiazole (DOBT) derivatives with/without thiophene unit, were synthesized via Stille cross-coupling polymerization reaction. These copolymers are promising for the applications in BHJ solar cells due to their good solubilities， proper thermal stability and moderate hole mobility as well as low bandgap. The photovoltaic properties of the copolymers were investigated based on the blend of the different polymer/PC71BM weight ratio under AM1.5G illumination, 100 mW/cm2. The device with ITO/PEDOT:PSS/P2: PC71BM (1:2, w/w)/Ca/Al gave relatively better photovoltaic performance, with a power conversion efficiency of 1.55%.

Stabilization Of Basic Oxygen Furnace Slag By Hot-Stage Carbonation Treatment., Rafael M. Santos, Da Ling, Amin Sarvaramini, Muxing Guo, Jan Elsen, Faïçal Larachi, Georges Beaudoin, Bart Blanpain, Tom Van Gerven

Faculty Publications and Scholarship

Treatment and disposal of Basic Oxygen Furnace (BOF) slag, a residue of the steel production process characterized by high basicity and propensity for heavy metal leaching, is a costly burden on metallurgical plants; a sustainable valorization route is desired. The stabilization of BOF slag utilizing hot-stage carbonation treatment was investigated; this approach envisions carbonation during the hot-to-cold pathway followed by the material after the molten slag is poured and solidified. Three experimental methodologies were employed: (i) in-situ thermogravimetric analyzer (TGA) carbonation was used to assess carbonation reaction kinetics and thermodynamic equilibrium at high temperatures; (ii) pressurized basket reaction carbonation was …

Design And Characterization Of Asymmetric Cross-Linked Polymer Membranes By Molecular Dynamics Modeling And Simulations, Jee-Ching Wang, Athanasios I. Liapis

Chemical and Biochemical Engineering Faculty Research & Creative Works

No abstract provided.

Stochastic Simulation Of Entangled Polymeric Liquids In Fast Flows: Microstructure Modification, Joontaek Park, David W. Mead, Morton M. Denn

Chemical and Biochemical Engineering Faculty Research & Creative Works

We have modified the full-chain stochastic tube (XDS) model developed by Xu et al. [J. Rheol. 50, 477-494 (2006)] to simulate the rheology of entangled melts and solutions of linear monodisperse polymers. The XDS model, which has a single adjustable parameter that is equivalent to the Rouse time, successfully describes steady and transient shear and normal stress data at low to moderate rates, but the results deviate systematically from experimental data at high rates. The algorithm for re-entanglement was revised, and a configuration- dependent friction coefficient (CDFC), as originally proposed by Giesekus, was incorporated to account for microstructural change of …

Strategic Selection Of An Optimal Sorbent Mixture For In-Situ Remediation Of Heavy Metal Contaminated Sediments: Framework And Case Study, Yi Wai Chiang, Rafael M. Santos, Karel Ghyselbrecht, Valérie Cappuyns, Johan A. Martens, Rudy Swennen, Tom Van Gerven, Boudewijn Meesschaert

Faculty Publications and Scholarship

Aquatic sediments contaminated with heavy metals originating from mining and metallurgical activities of aquatic sediments poses significant risk to the environment and human health due to the fact that these sediments not only act as a sink for heavy metals, but can also constitute a secondary source of heavy metal contamination. A variety of sorbent materials has demonstrated the potential to immobilize heavy metals. However, the complexity of multi-element contamination makes choosing the appropriate sorbent mixture and application dosage highly challenging. In this paper, a strategic framework is designed to systematically address the development of an in-situ sediment remediation solution …

Adsorption Of Multi-Heavy Metals Onto Water Treatment Residuals: Sorption Capacities And Applications, Yi Wai Chiang, Karel Ghyselbrecht, Rafael M. Santos, Johan A. Martens, Rudy Swennen, Valérie Cappuyns, Boudewijn Meesschaert

Faculty Publications and Scholarship

Inherently formed iron-based water treatment residuals (WTRs) were tested as alternative sorbents for multi-heavy metal removal from synthetic solutions, contaminated sediments, and surface waters. The WTRs were mainly composed of iron (hydr)oxides and had a high BET surface area (170.7 m²/g), due to the presence of micro- and mesopores. The sorption capacity of WTRs for As(V), Cd²⁺, Pb²⁺ and Zn²⁺ from synthetic solutions surpassed that of a commercially available goethite by 100-400% for single contaminant tests, and by 240% for total sorption in multi contaminant tests. The maximum sorption capacity of WTRs towards As(V), …

Mineralization Potential Of Electrospun Pdo-Hydroxyapatite-Fibrinogen Blended Scaffolds, Isaac A. Rodriguez, Parthasarathy A. Madurantakam, Jennifer M. Mccool, Scott A. Sell, Hu Yang, Peter C. Moon, Gary L. Bowlin

Chemical and Biochemical Engineering Faculty Research & Creative Works

The current bone autograft procedure for cleft palate repair presents several disadvantages such as limited availability, additional invasive surgery, and donor site morbidity. The present preliminary study evaluates the mineralization potential of electrospun polydioxanone:nano-hydroxyapatite: fibrinogen (PDO: nHA: Fg) blended scaffolds in different simulated body fluids (SBF). Scaffolds were fabricated by blending PDO: nHA: Fg in the following percent by weight ratios: 100: 0: 0, 50: 25: 25, 50: 50: 0, 50: 0: 50, 0: 0: 100, and 0: 50: 50. Samples were immersed in (conventional (c), revised (r), ionic (i), and modified (m)) SBF for 5 and 14 days to …

Polymers For Delivering A Substance Into A Cell, Kaushal Rege, Ravindra S. Kane, Steven M. Cramer, Sutapa Barua

Chemical and Biochemical Engineering Faculty Research & Creative Works

Disclosed herein are polymers that can be made cationic and used to deliver a substance into a cell. Also disclosed are pharmaceutical compositions comprising the polymers and methods of using the polymers.

Investigation Of Spillover Effect To Enhance Hydrogen Storage, Sarah C. Corrigan, Lin Simpson, Thomas Gennett

STAR Program Research Presentations

Hydrogen is an attractive energy option because of its low
environmental impact, but a critical problem is its low energy
density, which makes it difficult to store. For example, the US
Department of Energy (DOE) hydrogen plan for fuel cell powered
vehicles requires a gravimetric density of 6.5 wt%. There are several
existing hydrogen storage methods, including compressed gas,
liquefaction, metal hydrides, and physisorption, but at present, none
of these technologies comes close to achieving the targets set by the
DOE. Although chemical storage methods have been claimed to be the
most promising hydrogen storage technology, and activated carbons the …

Did Mineral Surface Chemistry And Toxicity Contribute To Evolution Of Microbial Extracellular Polymeric Substances?, Jie Xu, Jay M. Campbell, Nianli Zhang, William J. Hickey, Nita Sahai

College of Polymer Science and Polymer Engineering

Modern ecological niches are teeming with an astonishing diversity of microbial life in biofilms closely associated with mineral surfaces, which highlights the remarkable success of microorganisms in conquering the challenges and capitalizing on the benefits presented by the mineral-water interface. Biofilm formation capability likely evolved on early Earth because biofilms provide crucial cell survival functions. The potential toxicity of mineral surfaces toward cells and the complexities of the mineral-water-cell interface in determining the toxicity mechanisms, however, have not been fully appreciated. Here, we report a previously unrecognized role for extracellular polymeric substances (EPS), which form biofilms in shielding cells against …

En Route Towards Α-Benzotriazoyl Nitroso Derivatives, Jean-Christophe M. Monbaliu, Lucas K. Beagle, Judit K. Beagle, Matthias Zeller, Christian V. Stevens, Alan R. Katritzky

Chemistry Faculty Publications

A new class of geminally-substituted nitroso compounds, i.e., α-benzotriazoyl nitroso derivatives, is presented. These compounds display a rather different behavior than other related nitroso compounds bearing a geminal electron-withdrawing group. An unexpected and spontaneous oxidation to the nitro analog is observed in solution.

Synthesis Of Zeolitic-Type Adsorbent Materials From Municipal Solid Waste Incinerator Bottom Ash And Its Application In Heavy Metal Adsorption, Yi Wai Chiang, Karel Ghyselbrecht, Rafael M. Santos, Boudewijn D. Meesschaert, Johan A. Martens

Faculty Publications and Scholarship

Municipal solid waste incinerator (MSWI) bottom ash (BA) was converted to zeolitic-type adsorbent materials by hydrothermal conversion under strongly alkaline conditions. The conversion product was determined to be a mixture of sodium aluminum silicate hydrate (SASH) (Na2O·Al2O3·1.68SiO2·1.73H2O) and tobermorite (Ca5Si6O16(OH)2·4H2O). The BET specific surface area was 22.1 m2/g, which represented a significant gain compared to the BA (4.6 m2/g) due to the formation of micropores and mesopores. The converted BA demonstrated promising performance for application as a sorbent towards several heavy metals (oxyanions of As(V), and Cd2+, Co2+, Ni2+, Pb2+, and Zn2+). Its performance was found to be generally superior …

Adsorption Kinetics Of Pb(Ii) And Zn(Ii) Ions Unto Carbonized Groundnut Shells And Maize Cobs, Leke Luter, Aboi Julius, Henry T. Dekaa, B. A. Ikyenge, Ande Sesugh, Monday Uchenna Okoronkwo

Chemical and Biochemical Engineering Faculty Research & Creative Works

Maize cobs and groundnut shell adsorbents from agricultural by-products were carbonized and investigated for adsorption of two selected metals, Lead (Pb II) and Zinc (Zn II) from aqueous solutions of these metals. Kinetic studies of the adsorption processes were investigated employing Elovich and the intraparticle diffussion models. The results showed that, the adsorption capacities of these comparatively cheaper adsorbents and their efficiency for the removal of Pb(II) and Zn(II) ions from aqueous solution present them suitable for use in place of the costly commercial activated carbons.