Engineering Commons^™

Recent Advances In Developing Cell-Free Protein Synthesis Biosensors For Medical Diagnostics And Environmental Monitoring, Tyler P. Green, Joseph P. Talley, Bradley Charles Bundy

Faculty Publications

Cell-free biosensors harness the selectivity of cellular machinery without living cells’ constraints, offering advantages in environmental monitoring, medical diagnostics, and biotechnological applications. This review examines recent advances in cell-free biosensor development, highlighting their ability to detect diverse analytes including heavy metals, organic pollutants, pathogens, and clinical biomarkers with high sensitivity and specificity. We analyze technological innovations in cell-free protein synthesis optimization, preservation strategies, and field deployment methods that have enhanced sensitivity, and practical applicability. The integration of synthetic biology approaches has enabled complex signal processing, multiplexed detection, and novel sensor designs including riboswitches, split reporter systems, and metabolic sensing modules. …

Mantle Flow And Crustal Deformation Revealed By Seismic Anisotropy In The Subduction Zone Beneath Myanmar, Enbo Fan, Mingming Jiang, Yinshuang Ai, Stephen S. Gao, Kelly H. Liu, Yumei He, Yiming Bai, Guangbing Hou, Yuan Ling, Chit Thet Mon, Myo Thant, Kyaing Sein

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

The oblique convergence of the Indian and Eurasian plates drives significant deformation in the crust and mantle beneath Myanmar. However, the crustal deformation in the Indo-Burman Ranges (IBR) and mantle flow beneath Myanmar and adjacent areas remain unclear due to limited studies. We utilized data from the newly deployed second phase of the China-Myanmar Geophysical Survey of the Myanmar Orogen array to perform shear wave splitting analysis of PKS, SKKS, and SKS (XKS) phases. Our results, together with previous findings, provide new insights into mantle flow and crustal deformation across central Myanmar. In the IBR, we observed a transition from …

Cultivation Of Botryococcus Braunii For The Production Of Hydrocarbons Suitable For Fuel Use, Bryan C. Carroll

All Theses

Energy security, rural poverty, and climate change are pressing issues of our time. Biofuels provide a solution to these issues, with a focus on sustainable aviation fuel, SAF, due to compatibility with aircraft infrastructure and energy density. This research aims to review and produce knowledge about a specific microalga, Botryococcus braunii, for its potential for SAF. First a literature review on the process was conducted followed by an experimental study on the impact of aqueous media and inorganic carbon its growth and hydrocarbon content. The literature review found the process consists of cultivation followed by lipid extraction or hydrothermal …

Simulation Of Photochemical Effects On Air Quality, Grace Li

Chemical Engineering Undergraduate Honors Theses

Nitrogen dioxide (NO₂) and ozone (O₃) are both EPA criteria air pollutants in the troposphere, largely generated by combustion and therefore present in significant concentrations in urban areas. Sunlight facilitates chemical reactions between pollutants and ambient air. Aerosols modulate the amount of available energy required to drive such photochemical reactions, ultimately impacting air quality. Simulating photolysis rates with FastJX software is a resource-efficient strategy to study how these aerosols can affect air quality.

Polymer-Enhanced Nanopore Sensing, Eugene Gyasi Agyemang

Graduate Theses and Dissertations

The resistive pulse technique characterizes single analytes by detecting fluctuations in the ion current as they pass through a narrow orifice connecting two electrolyte-filled chambers, each containing a single electrode. The amplitude, shape, frequency, and duration of these fluctuations primarily provide information about the analyte’s size, shape, concentration, and net surface charge, respectively. One configuration for resistive pulse measurements is of an electrolyte-filled nanopipette immersed in a bath, where the nanopipette tip acts as the nanoscale orifice. It was previously shown that incorporating the large quantities polymer polyethylene glycol (PEG 8K, 50% w/v) into the external electrolyte bath dramatically enhanced …

Evaluation Of Salt-Free Electrodialysis Metathesis For High Recovery Inland Desalination Brine Management, Tayia Oddonetto

Open Access Theses & Dissertations

Salt-Free Electrodialysis Metathesis (SF-EDM) is an emerging electro-driven membrane technology designed to minimize brine discharge while enabling selective ion separation and resource recovery. This dissertation presents an evaluation of SF-EDM, spanning bench-scale studies with synthetic brine from the Brackish Groundwater National Desalination Research Facility in Alamogordo, NM, real reverse osmosis (RO) brines from the Kay Bailey Hutchinson Desalination Plant in El Paso, TX, and finally a weeklong pilot demonstration at the Yuma Desalting Plant in Yuma, AZ. Bench-scale experiments established process feasibility and performance trends, while pilot results revealed the value of pre-treatment and system configuration. SF-EDM demonstrated high hydraulic …

Impact Of Cysteine And Tyrosine Dipeptides On Cho Cell Performance In A Perfusion Mimic, Corrin L. Pruitt

All Theses

Perfusion cell cultures typically achieve higher cell densities and generate higher volumetric productivities than fed-batch cultures due to continuous nutrient supply and spent media removal. Despite these advantages, perfusion cell cultures remain underutilized for licensed product manufacturing, primarily due to the lack of small-scale perfusion models for high-throughput process development and the complexities involved in media formulation capable of supporting high cell densities during long-term continuous operation. To avoid nutrient limitation at high cell densities, current perfusion processes rely on using higher perfusion rates, which results in significant media wastage and downstream product dilution. Therefore, there has been an effort …

Curved Confinement Directs Anchoring-Mediated Structural Transitions In Highly Chiral Liquid Crystal Shells, Sepideh Norouzi, Jeremy Money, Stiven Villada-Gil, José Martínez-Gonález, Monirosadat Sadati

Faculty Publications

Cholesteric liquid crystals (CLCs) confined in curved geometries exhibit a rich spectrum of defectmediated morphologies governed by the interplay between chirality, curvature, surface anchoring, and confinement. This study systematically investigates structural transitions in highly chiral CLC shells under asymmetric anchoring conditions, focusing on the effects of shell thickness and curvature on pitch axis reorientation and defect formation. Utilizing microfluidic techniques, we generate core–shell droplets with independently tunable anchoring at inner and outer aqueous interfaces. Transitioning from planar–planar to planar-homeotropic boundary conditions via surfactant-mediated modulation induces profound reorganizations in the director field, giving rise to focal conic domains (FCDs), stripe patterns, …

Development And Evaluation Of Supported Ionic Liquid Membrane And Porphyrin Frameworks For Carbon Capture Separation, Sarang Ismail

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

The global urgency to mitigate anthropogenic CO₂ emissions has intensified the pursuit of energy-efficient separation technologies. Supported Ionic Liquid Membranes (SILMs) have emerged as promising candidates for CO₂ capture due to their tunable solubility-selectivity and low energy requirements. However, challenges such as mechanical instability, limited scalability, and trade-offs in transport performance have impeded their widespread adoption.

This thesis explores a systematic approach to designing and optimizing SILMs for enhanced CO₂ separation by tailoring polymer–ionic liquid interactions, processing conditions, and material architectures. A comprehensive set of studies were conducted using poly(vinylidene fluoride) (PVDF) with varying molecular weights, different grades of PEBAX®, …

Impact Of Biodegradation On The Mechanical And Fatigue Properties Of 3d-Printed Pla Bone Scaffolds, Hamed Bakhtiari, Alireza Nouri, Muhammad Aamir, Mohadeseh Najafi, Majid Tolouei-Rad

Research outputs 2022 to 2026

A proper degradation rate of bone scaffolds ensures optimal mechanical support and effective tissue regeneration. The present study examines the degradation effects of simulated body fluids (SBF) on the compressive and fatigue strength of 3D-printed PLA bone scaffolds. Scaffolds with varying surface-to-volume (S/V) ratios and identical porosity (60 %) were immersed in Hanks' solution for a maximum period of 30 days. Static and dynamic compression tests were performed at different immersion times to assess how S/V ratio influences the degradation process. CT images showed that scaffold pore structure remained interconnected after biodegradation, with no significant change in strut thickness or …

The Influence Of Surface Textural Properties And Adsorption Temperature On H2 Adsorption And Storage Performance Of Mil-88b(Fe) Mofs, Tawanda Matamba, Samira Sadeghi, Hussein Rasool Abid, Masoumeh Zargar, Alireza Keshavarz, Stefan Iglauer

Research outputs 2022 to 2026

To advance the establishment of a stable H2 economy we need to solve the issue regarding its storage. The physicochemical properties of Metal Organic Frameworks (MOFs) make them suitable for H2 storage. Therefore, here, we synthesized two Iron-based MOFs (12-MIL-88 B(Fe), 24-MIL-88 B(Fe) at different reaction times (12 h and 24 h), to investigate the relationship between adsorption temperature and pressure with the material's surface textural properties towards H2 storage (at 30 °C, 0 °C, −78.5 °C, and −196.15 °C and from vacuum pressure to 55 bar). Results showed that at 30 °C and 0 °C adsorption temperature, H2 adsorption …

Advancement Of Biocarbon Materials In Sustainable Thermal And Electrochemical Energy Storage With Future Outlooks, Md Shahriar Mohtasim, Barun K. Das

Research outputs 2022 to 2026

Biocarbon exhibits significant potential in thermal and electrochemical energy storage owing to its higher surface area, flexible porosity, and superior thermal stability, facilitating effective energy absorption, storage, and conversion. Additionally, its sustainable and cost-effective nature, derived from renewable biomass, aligns with the growing demand for eco-friendly solutions. There is not enough review work that offers comprehensive details on the unique properties of biocarbon (both animal and plant-derived), synthesis and characterization methods, the root level mechanism of biocarbon's interaction with phase change materials (PCMs) matrix, the generalization of thermal and electrochemical regulation with an emphasis on the benefits to the environment …

Techno-Economic Analysis (Tea) And Life-Cycle Assessment (Lca) Of Sustainable Aviation Fuel (Saf) Production Through Circular Economy (Ce) Practices: A Focus On Supply Chain Optimization And Policy Implications, Edmund Gyandoh

Chemical and Biological Engineering ETDs

This study provides a comprehensive systems-level evaluation of an integrated circular biorefinery for sustainable aviation fuel (SAF) production. Employing supply chain optimization, technoeconomic analysis, lifecycle analysis, policy modeling, and multicriteria decision analysis, the research assesses technical feasibility, economic viability, and environmental performance. The circular economy model demonstrates exceptional resource efficiency, achieving a 92.3% overall circularity score with strong material recycling, water reuse, waste minimization, and near-complete energy recovery, resulting in net-negative carbon emissions and net energy export. Scaling the facility to commercial capacity (500 million liters per year) enables significant economic improvements. The minimum fuel selling price (MFSP) decreases from …

Discovering And Designing Novel Perovskite Photovoltaic Materials Via Machine Learning, Junyeong Ahn

Discovery Undergraduate Interdisciplinary Research Internship

Perovskite semiconductors are promising materials for high-efficiency photovoltaics due to their outstanding optoelectronic properties, emerging as a sustainable energy source through solar cell applications. Perovskites with the ABX₃ composition (A, B = metal or organic cations with varying oxidation states; X = chalcogen or halogen anions) have gained interest for their excellent phase stability and compositional tunability. However, combinatorial possibilities arising from the many choices of A, B, and X site species, and their respective mixing fractions, a large number of possible ABX₃ perovskites remain undiscovered. In this work, we used machine learning (ML) methods to design new stable and …

Collection Of Instructional Slides From Molten Salt Electrochemistry Symposium (Moses), Devin Rappleye, Carlos Mejia

Faculty Publications

During the Molten Salt Electrochemistry Symposium (MoSES) on July 30-31, 2025, interactive instruction was given to the attendees including live demonstrations. These slides contain the introductory instructions given for each learning module at MoSES 2025. Please visit https://pyro.byu.edu/moses for more information.

Numerical Simulation Of The Pitting Corrosion Behavior Of Stainless Steel Bellows Influenced By Varying Liquid Film Thicknesses, Lu-Jun Ren, Guo-Min Li, Zhen-Xiao Zhu, Hai-Yan Xiong, Bing Li

Journal of Electrochemistry

To advance the understanding of the corrosion behavior of stainless steel bellows in marine atmospheric environments and enhance the precision of service life predictions, this study employs finite element simulations to investigate the pitting corrosion rates and pit morphologies of bellows peaks and troughs under varying electrolyte film thicknesses. The model incorporates localized electrochemical reactions, oxygen concentration, and homogeneous solution reactions. For improved computational accuracy, the fitted polarization curve data were directly applied as nonlinear boundary conditions on the electrode surface via interpolation functions. Simulation results reveal that the peak regions exhibit faster corrosion rates than the trough regions. With …

Regulating The Amount Of Graphene Oxide For Enhanced Capacitive Energy Storage Of Mof Derived Materials, Yong-Ji Qin, Jing-Quan Yang, Hao Wang, Mei-Ling Lian, Pei-Pei Jia, Jun Luo, Xi-Jun Liu, Jun-Feng Liu

Journal of Electrochemistry

In pursuit of more efficient and stable electrochemical energy storage materials, composite materials consisting of metal oxides and graphene oxide have garnered significant attention due to their unique structures and exceptional properties. Graphene oxide (GO), a two-dimensional material with an extremely high specific surface area and excellent conductivity, offers new possibilities for enhancing the electrochemical performance of metal oxides. In this work, we synthesized metal- organic framework (MOF) and GO composites by regulating the amount of GO, and successfully prepared composites of metal oxides supported by nitrogen-doped carbon frameworks and GO through a simple one-step calcination process. Based on the …

Ionic Liquid Enhanced Proton Transfer For Neutral Oxygen Evolution Reaction, Ming-Xing Chen, Nian Liu, Zi-He Dua, Jing Qi, Rui Cao

Journal of Electrochemistry

The development of highly active catalyst in pH-neutral media for oxygen evolution reaction (OER) is critical in the field of renewable energy storage and conversion. Nevertheless, the slow kinetics of proton-coupled electron transfer (PCET) hinders the overall OER efficiency. Herein, we report an ionic liquid (IL) modified CoSn(OH)₆ nanocubes (denoted as CoSn(OH)₆-IL), which could be prepared through a facile strategy. The modified IL would not change the structural characteristics of CoSn(OH)₆, but could effectively regulate the local proton activity near the active sites. The CoSn(OH)₆-IL exhibited higher intrinsic OER performances than the pristine …

Detection Of Oil Pollution On The Tigris River In Iraq Using Fluorescence And Reflecting Techniques, Ahmad K. Ahmad, Thamer M. Mohammed

Karbala International Journal of Modern Science

In this study, a broadband light source (visible and ultraviolet) was used to name minerals via fluorescence spectra and estimate slick oil thickness, ranging from sub-millimetres, using the reflecting spectrum technique. Using a fluorescent technique, we obtained fluorescence spectra of the samples, converting and processing the signals to produce high-resolution data, which enabled the identification of the types of dissolved elements and oil slicks in the Tigris River, highlighting pollution sources and potential control measures. This system aims to show the faint signal in fluorescence samples collected from the cooling system outlet water throughout the refining process from AL-Dora (Baghdad) …

Modeling The Influence Of Silicon Content On Electrochemical Performance Of Silicon-Graphite Blended Electrodes Considering Voltage Hysteresis, Mohamed Atwair, Paul T. Coman, Ralph E. White

Faculty Publications

Silicon, with its high specific capacity, is a highly promising material for lithium-ion battery anodes. To enhance durability, it is commonly combined with graphite in composite anodes. Despite this, the electrochemical dynamics between silicon and graphite are not yet fully understood. Modeling serves as an important tool for analyzing and improving batteries, but current models lack comprehensive representation of the coupled electrochemical and structural behavior of silicon-graphite blended electrodes. Herein, we present a comprehensive model for blended Si/Gr electrodes that incorporates the distinct properties and kinetics of each material. Our approach accounts for the dependence of electrode thickness and solid …

Influence Of Zinc Oxide Nanoparticles On The Efficiency Of Oxytetracycline Removal From Wastewater Using Continuous Catalytic Ozonation, Sarmad Al-Anssari, Hassanain A. Hassan, Maha K. Mohsin, Ahmed A. Mohammed

Research outputs 2022 to 2026

Antibiotics must be fully eliminated before they are released into the environment. In most cases, conventional wastewater treatment systems are not built to handle polar microcontaminants such as antibiotics. Oxytetracycline (OTC) is one of these antibiotics, an environmental hazard contaminant in aqueous solutions. Therefore, an advanced treatment method is needed for wastewater contaminated with antibiotics. In this study, we employed zinc oxide nanoparticles (ZnO), and the catalytic ozonation procedure was employed to increase the ozonation efficiency. A continuous experiment was carried out to compare the effectiveness of catalytic and single ozonation in degrading OTC in a continuous reactor. The flow …

Modeling Self-Discharge In Li/S Batteries Through Electrochemical Anode Reactions: A Theoretical Perspective, Ralph E. White, Paul T. Coman

Faculty Publications

The growing demand for high-energy-density batteries has renewed interest in lithium–sulfur (Li/S) systems, which offer significant advantages but suffer from severe self-discharge during rest. While prior studies attribute this degradation to chemical parasitic reactions or polysulfide shuttling, they overlook the inherently electrochemical nature of anode-side processes. In this work, a 1D physics-based model of a Li/S battery was developed to explicitly incorporate lithium-metal oxidation and the stepwise electrochemical reduction of polysulfides at the anode. Using COMSOL Multiphysics, galvanostatic discharge followed by open-circuit rest under two conditions was analyzed - with and without parasitic anode reactions. The results show that when …

An Acoustofluidic Device For Sample Preparation And Detection Of Small Extracellular Vesicles, Jessica F. Liu, Jianping Xia, Joseph Rich, Shuaiguo Zhao, Kaichun Yang, Brandon Lu, Ying Chen, Tiffany Wen Ye, Tony Jun Huang

Faculty Publications

Small extracellular vesicles (sEVs) have emerged as powerful vectors for liquid biopsy, offering a noninvasive window into the dynamic physiological and pathological states of the body. However, to fully leverage the clinical potential of sEV biomarkers, it is imperative to develop robust and efficient technologies for their isolation and analysis. In this study, we introduce a novel sharp-edge acoustofluidic platform designed for rapid and effective sample preparation, coupled with sensitive detection of specific sEV populations based on their surface markers. Our approach utilizes acoustically activated sharp-edge microstructures to concentrate bead-bound sEVs within the microfluidic device, facilitating immediate visualization by fluorescence …

Theoretical And Experimental Investigation Of Liquid-Liquid Phase Separation: Characterizing Elastin-Like-Polypeptides, Adam D. Quintana

Chemical and Biological Engineering ETDs

This dissertation develops and validates a semi-empirical Flory–Huggins-based interaction model, combined with Cahn–Hilliard simulations, for predicting multi-component liquid–liquid phase separation (LLPS) in elastin-like polypeptide (ELP) systems. Equilibrium droplet compositions, measured using a PDMS-based microfluidic device, enabled direct parameterization of interaction coefficients. The model was applied to generate phase diagrams and assess composition dependence in ternary mixtures. Cahn–Hilliard simulations were conducted to explore potential phase morphologies under different interfacial conditions. Multi-component Lattice Boltzmann simulations were implemented to model droplet morphology evolution under varying interfacial and diffusive parameters, reproducing experimentally relevant morphologies. A three-phase wetting study revealed conditions for selective wetting and …

Wind Tunnel Model Of The Jack Rabbit Ii Field Experiments In The Mock Urban Array: Part 2. Approach Wind Conditions And Particle Image Velocimetry Measurements Of Simulated Chlorine Releases, Paulo V. Lopez, Thomas O. Spicer, Chad T. Smith

Chemical Engineering Faculty Publications and Presentations

The Jack Rabbit II (JR-II) Mock Urban Environment field test was reproduced in a 1:50 scale physical model in the wind tunnel at the Chemical Hazards Research Center of the University of Arkansas. The agreement of the approaching wind characteristics between field test and model was verified using 3D Laser Doppler Velocimetry (LDV). 2D Particle Image Velocimetry (PIV) tests were conducted in the model to obtain velocity measurements in the MUE. Velocity measurements taken before and during a simulated chlorine release were compared. PIV results show the general flow complexity in the last rows of the MUE and the impact …

Anion Exchange Membrane Transport And Accelerated Testing Methods For Co2 Electrolyzers With Cu-Based Electrocatalyst, John C. Hendershot

LSU Doctoral Dissertations

Electrocatalytic carbon dioxide (CO₂) reduction to C₂₊ products holds promise for low carbon intensity fuels, chemicals, and food; however, durability challenges, particularly bicarbonate (HCO₃^-)and carbonate (CO₃^2-) salt precipitation, hinder their commercialization. This report considers water (H₂O) and ion transport properties of conventional anion exchange membranes (AEMs) in zero-gap membrane electrode assembly (MEA) configurations using Cu electrocatalysts. Transport characterization includes H₂O diffusion, permeability, potassium (K⁺) diffusion, and transference numbers using three commercial AEMs, including piperidinium-based (Versogen), quaternary ammonium-based (Fumasep), and imidazolium-based (Dioxide Materials) membranes. Accelerated lifetime …

H2-Rich Biogas Production From Fixed Bed Wheat Straw Pyrolysis And The Potential Of Produced Biochar As H2 Storage Material, Tawanda Matamba, Hussein Rasool Abid, Alireza Keshavarz, Stefan Iglauer

Research outputs 2022 to 2026

H2 is a clean energy source, and is targeted as one of the ways to transition from fossil fuels. However, there are drawbacks in production and storage of hydrogen. To cover the supply, we need H2 from many resources and because of its low density we need materials that can store bulky quantities of H2. Here we investigated the potential of a renewable source (waste wheat straw) to produce and store H2 through pyrolysis and adsorption. The impact of pressure and temperature (500–900 °C, and 1.01–30 bar range) on the selectivity of H2 rich gas production was systematically investigated; and …

Low Temperature Methane Coupling With Co And Co2, A K M Kazi F.M. Aurnob

LSU Doctoral Dissertations

Methane is the smallest hydrocarbon and the most abundant component in natural gas. Despite its availability, its chemical utilization has remained limited due to the challenges associated with direct methane activation and conversion. Most of the methane oxidation and oxidative carbonylation reactions in literature have been carried out at high-pressure using batch reactors or at ambient pressure using flow reactors. While batch reactors have been shown to have higher product yields, they are limited in their capability to provide real-time kinetic insights and comprehensive mechanistic understanding of the reactions involved due to the long residence time. This limits rationalization of …

Pd-Based Hydrogen Separation Membranes Synthesized Via A Liquid-Phase Route, Chase W. Thompson

Chemical and Biological Engineering ETDs

Palladium (Pd) membranes have gained significant attention for their ability to selectively separate hydrogen, a critical process for clean energy applications such as fuel cells and hydrogen storage. However, challenges such as grain growth, sintering, hydrogen embrittlement, and film uniformity limit their scalability and long-term stability. This thesis focuses on the controlled synthesis, deposition, and stability of Pd nanoparticles to optimize membrane performance for hydrogen separation. This work investigates solution-phase synthesis of Pd nanoparticles, focusing on temperature, precursor concentration, and solvent composition as key variables influencing particle growth and dispersion. Pd membranes were fabricated using nanoparticle deposition onto porous supports, …

Magnetic Field Enabled Assembly And Propulsion Of Colloidal Particles In A Magnetic Medium, Hashir M. Gauri

LSU Doctoral Dissertations

Colloidal particles are nano/micro meter-sized particles dispersed in a fluid medium and serve as diverse building blocks for assembling complex structures. The ease of tunability of the shape, size, and interparticle interactions of colloidal particles facilitates their assembly into rich structures and phases that mirror the assembly process of atomic systems. Often regarded as "big atoms" colloidal particles provide an ideal model system for investigating complex phenomena in condensed matter, such as crystallization and nucleation. While the assembly of colloids under thermodynamic equilibrium has been extensively studied, recent interest has shifted toward exploring colloids in non-equilibrium conditions to create dynamic …