Engineering Commons^™

Effects Of Ovariectomy And Anatomical Location On Osteonal Encroachment In Adult Cortical Ovine Bone, Paige Brell Ryan

Master's Theses

The purpose of this study is to further quantify adult ovine ovariectomized bone for new remodeling characteristics to obtain a better understanding of how remodeling is occurring and the effectiveness of this animal model for the study of postmenopausal osteoporosis. Postmenopausal osteoporosis is a major health concern and animal models to test new treatment options are needed. The ovine model is a good option because the ewes undergo Haversian remodeling, are a large sized animal, and have a similar hormone profile to humans. Ewes, however, do not undergo a natural menopause, so an ovariectomy surgery was conducted in the sheep …

Bacterial Growth On Metal And Non-Metal Surfaces In A Static Bioreactor, Rolan Yuk Loong Liong

Master's Theses

Research was conducted to observe bacterial growth on the surface of metals in a static bioreactor. Metal and non-metal samples were subjected to bacterial exposure (1 day and 9 days). The metal samples were surface treated prior to bacterial exposure. The microstructures of the surface treated samples were analyzed by optical microscopy. After exposure, the microstructures of the samples were analyzed by scanning electron microscopy (SEM). The analysis suggested that microbial attachment on the surface was related to the underlying microstructure of steel. The preferential attachment of microbes could potentially be influenced by cathodic and anodic regions created by the …

Biomedical Advancements In Injury Recovery, Performance Enhancement, And Mechanical Assistance Applied To Athletics, Matthew Russell

Biomedical Engineering

Athletics is constantly changing, and athletes are continually getting bigger, faster, and stronger. At the same time, biomedical technology and innovation is rapidly developing. New methods of injury recovery, genetic enhancement, and prosthetic assistance are being assimilated into the athletic world. The up and coming athlete needs to be aware of all of the usable information around them. This project is an accumulation of some of the cutting edge advancements in those fields. Platelet Rich Plasma Injections, Frequency Specific Microcurrent Treatment, and Silk Polymer Anterior Cruciate Ligament Replacement are innovative new ways to treat common sports injuries. Performance enhancement has …

Simultaneous Measurement Of Deep Tissue Blood Flow And Oxygenation Using Noncontact Diffuse Correlation Spectroscopy Flow-Oximeter, Ting Li, Yu Lin, Yu Shang, Lian He, Chong Huang, Margaret M. Szabunio, Guoqiang Yu

Biomedical Engineering Faculty Publications

We report a novel noncontact diffuse correlation spectroscopy flow-oximeter for simultaneous quantification of relative changes in tissue blood flow (rBF) and oxygenation (Δ[oxygenation]). The noncontact probe was compared against a contact probe in tissue-like phantoms and forearm muscles (n = 10), and the dynamic trends in both rBF and Δ[oxygenation] were found to be highly correlated. However, the magnitudes of Δ[oxygenation] measured by the two probes were significantly different. Monte Carlo simulations and phantom experiments revealed that the arm curvature resulted in a significant underestimation (~-20%) for the noncontact measurements in Δ[ …

Atypical Glycolysis In Clostridium Thermocellum, Jilai Zhou, Daniel G. Olson, D. Aaron Argyros, Yu Deng, Walter M. Van Gulik, Johannes P. Van Dijken, Lee R. Lynd

Dartmouth Scholarship

Cofactor specificities of glycolytic enzymes in Clostridium thermocellum were studied with cellobiose-grown cells from batch cultures. Intracellular glucose was phosphorylated by glucokinase using GTP rather than ATP. Although phosphofructokinase typically uses ATP as a phosphoryl donor, we found only pyrophosphate (PPi)-linked activity. Phosphoglycerate kinase used both GDP and ADP as phosphoryl acceptors. In agreement with the absence of a pyruvate kinase sequence in the C. thermocellum genome, no activity of this enzyme could be detected. Also, the annotated pyruvate phosphate dikinase (ppdk) is not crucial for the generation of pyruvate from phosphoenolpyruvate (PEP), as deletion of the ppdk gene did …

Picture Of A Chelate In Exchange: The Crystal Structure Of Nahodotma, A 'Semi'-Hydrated Chelate, Katherine M. Payne, Edward J. Valente, Silvio Aime, Mauro Botta, Mark Woods

Chemistry Faculty Publications and Presentations

Crystallography generally only provides static structural information. This can render it an ineffective technique for probing dynamic solution state processes. A crystal of HoDOTMA affords unique structures that effectively represent that of a lanthanide tetra-acetate chelate mid-way through the water exchange process.

Volatility In Mrna Secondary Structure As A Design Principle For Antisense, Erik Johnson, Ranjan Srivastava

Open Access Author Fund Awardees' Articles

Designing effective antisense sequences is a formidable problem. A method for predicting efficacious antisense holds the potential to provide fundamental insight into this biophysical process. More practically, such an understanding increases the chance of successful antisense design as well as saving considerable time, money and labor. The secondary structure of an mRNA molecule is believed to be in a constant state of flux, sampling several different suboptimal states. We hypothesized that particularly volatile regions might provide better accessibility for antisense targeting. A computational framework, GenAVERT was developed to evaluate this hypothesis. GenAVERT used UNAFold and RNAforester to generate and compare …

Comparison Of A Sio2-Cao-Zno-Sro Glass Polyalkenoate Cement To Commercial Dental Materials: Glass Structure And Physical Properties, A. W. Wren, A. Coughlan, F. R. Laffir, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Glass polyalkenoate cements (GPCs) have previously been considered for orthopedic applications. A Zn-GPC (BT 101) was compared to commercial GPCs (Fuji IX and Ketac Molar) which have a setting chemistry analogous to BT 101. Handling properties (working, T_w and setting, T_s times) for BT 101 were shorter than the commercial GPCs. BT 101 also had a higher setting exotherm (S_x - 34 °C) than the commercial GPCs (29 °C). The maximum strengths for BT 101, Fuji IX, and Ketac Molar were 75, 238, and 216 MPa (compressive, σ_c), and 34, 54, and 62 MPa (biaxial …

Effect Of Fine Wire Electrode Insertion On Gait Patterns In Children With Hemiplegic Cerebral Palsy, Joseph Krzak, Daniel M. Corcos, Adam Graf, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Background

Fine wire electromyography (EMG) is commonly used for surgical decision making in equinovarus foot deformity. However, this invasive technique may have the unwanted effect of altering the gait of children with cerebral palsy (CP). The purpose of this study was to determine if fine wire insertion into the posterior tibialis muscle affects temporal-spatial parameters and hindfoot kinematics during gait in children with equinovarus secondary to hemiplegic CP.

Methods

12 children with hemiplegic CP who presented with an equinovarus foot (mean age 12.5 yrs, four right-sided, eight left-sided) were recruited. Temporal-spatial parameters and 3-D segmental foot and ankle kinematic gait …

Long-Term Follow Up Of Van Nes Rotationplasty For Congenital Proximal Focal Femoral Deficiency, Jeffrey D. Ackman, Haluk Altiok, Ann Flanagan, Mary Peer, Adam Graf, Joseph Krzak, Sahar Hassani, Dan C. Eastwood, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Van Nes rotationplasty may be used for patients with congenital proximal focal femoral deficiency (PFFD). The lower limb is rotated to use the ankle and foot as a functional knee joint within a prosthesis. A small series of cases was investigated to determine the long-term outcome. At a mean of 21.5 years (11 to 45) after their rotationplasty, a total of 12 prosthetic patients completed the Short-Form (SF)-36, Faces Pain Scale-Revised, Harris hip score, Oswestry back pain score and Prosthetic Evaluation Questionnaires, as did 12 age- and gender-matched normal control participants. A physical examination and gait analysis, computerised dynamic posturography …

Protection Against Cardiac Injury By Small Ca2 +-Sensitive K+ Channels Identified In Guinea Pig Cardiac Inner Mitochondrial Membrane, David F. Stowe, Ashish K. Gadicherla, Yifan Zhou, Mohammed Aldakkak, Qunli Cheng, Wai-Meng Kwok, Ming Tao Jiang, James S. Heisner, Meiying Yang, Amadou K.S. Camara

Biomedical Engineering Faculty Research and Publications

We tested if small conductance, Ca^{2 +}‐sensitive K⁺ channels (SK_Ca) precondition hearts against ischemia reperfusion (IR) injury by improving mitochondrial (m) bioenergetics, if O₂‐derived free radicals are required to initiate protection via SK_Ca channels, and, importantly, if SK_Ca channels are present in cardiac cell inner mitochondrial membrane (IMM). NADH and FAD, superoxide (O₂⁻), and m[Ca^{2 +}] were measured in guinea pig isolated hearts by fluorescence spectrophotometry. SK_Ca and IK_Ca channel opener DCEBIO (DCEB) was given for 10 min and ended 20 min before IR. …

A Biomechanical Comparison Of Three Spondylolysis Repair Techniques In A Calf Spine Model, R. Roberto, B. Dezfuli, C. Deuel, S. Curtiss, S. Hazelwood

Biomedical Engineering

Summary of background data: Previous work has demonstrated the efficacy of lumbar pedicle screw hook rod (PSHR) techniques and the Buck screw in the stabilization of spondylolysis. The mechanical behavior of lower profile cervical implants used to create PSHR, hybrid cable plate constructs, and titanium miniplating has not previously been described.

Methods: Calf lumbar spines (L2-L6) were utilized for testing (n = 27). Intervertebral rotation was measured in the intact spines across the L4-5 segment before and after creation of bilateral pars interarticularis defects. Defects were then stabilized with one of three repair techniques, PSHR, miniplate, or …

Computational Fluid Dynamic Simulations For Determination Of Ventricular Workload In Aortic Arch Obstructions, Jessica S. Coogan, Frandics P. Chan, John F. Ladisa, Charles A. Taylor, Frank L. Hanley, Jeffrey A. Feinstein

Biomedical Engineering Faculty Research and Publications

Objective

The cardiac workload associated with various types of aortic obstruction was determined using computational fluid dynamic simulations.

Methods

Computed tomography image data were collected from 4 patients with 4 distinct types of aortic arch obstructions and 4 controls. The categorization of arch hypoplasia corresponded to the “A, B, C” nomenclature of arch interruption; a type “D” was added to represent diffuse arch hypoplasia. Measurements of the vessel diameter were compared against the normal measurements to determine the degree of narrowing. Three-dimensional models were created for each patient, and additional models were created for type A and B hypoplasia to …

Fabrication And Evaluation Of A Collagen-Based Fiber-Gel Three-Dimensional Construct For Peripheral Nerve Repair, Mevan Lakmal Siriwardane

Dissertations

Nerve regeneration following a peripheral nerve injury often relies on growth cone- mediated guidance and the presence of Schwann cells to support the regenerating axons and remyelinate portions of denervated nerve pathways. The emphasis of this work is to develop a synthetic nervous tissue construct that contains similar basal lamina or extracellular matrix to peripheral nerve in order to achieve a level of effectiveness in nerve repair and future peripheral nerve regeneration applications. To this end, three- dimensional nervous tissue constructs consisting of type I collagen are fabricated into a composite biomaterial scaffold to promote contact-guided growth of neuronal and …

Quantification Of Neural Substrates Of Vergence System Via Fmri, Yelda Alkan

Dissertations

Vergence eye movement is one of the oculomotor systems which allow depth perception via disconjugate movement of the eyes. Neuroimaging methods such as functional magnetic resonance imaging (fMRI) measure neural activity changes activity in the brain while subjects perform experimental tasks. A rich body of primate investigations on vergence is already established in the neurophysiology literature; on the other hand, there are a limited number of fMRI studies on neural mechanisms behind the vergence system.

The results demonstrated that vergence system shares neural sources and also shows differentiation within the boundaries of frontal eye fields (FEF) and midbrain of the …

Easily Implantable And Stable Nail-Fastener For Skeletal Fixation And Method, Patrick Atkinson, David Lecronier

Mechanical Engineering Patents

An intramedullary nail (20) defining a bore (34) is inserted into a medullary canal (26) of a bone (24). A threaded fastener (22) has a compression portion (48) presenting a compression portion diameter (D) and a threaded portion (50) present ing a threaded portion diameter (D). The fastener (22) extends through a near cortex hole (40) and/or a far cortex hole (42), and the threaded portion (22) threadedly engages the bore (34). A compression transmission device (54) is disposed between a head (44) of the fastener (22) and the intramedullary nail (20) for transmitting the compressional load of the threaded …

Quantification Of Human Motion On Roller Coaster Rides, Chirag Burman

Theses

Case reports have been published of people experiencing symptoms of traumatic brain injury (TBI) and/or ailments of the vascular tissue around the head. These reports pointed towards G-forces, a scalar measure without a specified direction, which represent the measure of the acceleration of an object divided by acceleration caused by gravity (9.81 m/s²), as a cause of said injuries. Research has been conducted on quantifying the G-forces experienced while on roller coasters, as well as the change in heart rate. However these studies have not been able to show a link between roller-coasters and symptoms.

This thesis aims …

Fuzzy Logic For Task Space Telemanipulation Of A Five Fingered Robotic Hand, Raaghavann Srinivasan

Theses

This work presents a fuzzy logic based HandyMan (Hand gesture commands for grasping and manipulation) system to recognize the operator's hand gestures during task space telemanipulation. A combination of joint positions may be shared between at least two manipulation gestures. To avoid misinterpretation of gestures by the gesture recognition system, six new manipulation gestures were introduced. The gestures are produced by the user wearing a CyberGlove™.

This system replaces the previous HandyMan gesture recognition method. The output of the fuzzy system drives the state machines to implement the gestures with the robot hand.

The experimental results show that the proposed …

Diffuse Axonal Injury Effect On Myelinating Cells And Axons, Jennifer Alison Zalk

Theses

There is no supporting evidence whether myelin degeneration in diffuse axonal injury (DAI) of the white matter is due to death of myelinating oligodendrocytes or secondary axotomy. Cortical neurons are not able to remain healthy in culture to have their axons myelinated. Dorsal root ganglion (DRG) neurons have been shown to be myelinated by cortical oligodendrocytes in culture. An in vitro stretch injury model was used to analyze the DRG axon pathology during and after injury. DRG myelinating Schwann cells are analyzed to demonstrate what is expected from injury to oligodendrocytes. DRG axons demonstrated a high tolerance to stretch …

Quantification Of In Vivo Oxidative Damage In Caenorhabditis Elegans During Aging By Endogenous F3-Isoprostane Measurement, Christiaan F. Labuschagne, Edwin C.A. Stigter, Margriet M.W.B. Hendriks, Ruud Berger, Joshua Rokach, Hendrik C. Korswagen, Arjan B. Brenkman

Chemistry and Chemical Engineering Faculty Publications

Oxidative damage is thought to be a major cause in development of pathologies and aging. However, quantification of oxidative damage is methodologically difficult. Here, we present a robust liquid chromatography-tandem mass spectrometry (LC-MS/MS) approach for accurate, sensitive, and linear in vivo quantification of endogenous oxidative damage in the nematode Caenorhabditis elegans, based on F3-isoprostanes. F3-isoprostanes are prostaglandin-like markers of oxidative damage derived from lipid peroxidation by Reactive Oxygen Species (ROS). Oxidative damage was quantified in whole animals and in multiple cellular compartments, including mitochondria and peroxisomes. Mutants of the mitochondrial electron transport proteins mev-1 and clk-1 showed increased oxidative damage …

Automated Point-Of-Care Image Processing Methodology For The Diagnosis Of Malaria, Michael B. Jorgensen

Master's Theses

Malaria has profoundly influenced human history for over four thousand years and despite numerous attempts at eradication, the prevention, diagnosis, and treatment of malaria have been largely ineffective. More than five hundred million people are affected by malaria every year resulting in over one million deaths. Drug resistance development by the parasite has diminished the effectiveness of numerous treatment options due, in part, to overtreatment of negative patients based on insufficient clinical algorithms and diagnostic methods. The goal of this research was to develop an image analysis algorithm to diagnose malaria with a high degree of sensitivity and specificity in …

Scanning In Situ Spectroscopy Pplatform For Imaging Surgical Breast Tissue Specimens, Venkataramanan Krishnaswamy, Ashley M. Laughney, Wendy A. Wells, Keith D. Paulsen, Brian W. Pogue

Dartmouth Scholarship

A non-contact localized spectroscopic imaging platform has been developed and optimized to scan 1 x 1 cm² square regions of surgically resected breast tissue specimens with ~150-micron resolution. A color corrected, image-space telecentric scanning design maintained a consistent sampling geometry and uniform spot size across the entire imaging field. Theoretical modeling in ZEMAX allowed estimation of the spot size, which is equal at both the center and extreme positions of the field with ~5% variation across the designed waveband, indicating excellent color correction. The spot sizes at the center and an extreme field position were also measured experimentally using the …

Polystyrene Microsphere And 5-Fluorouracil Release From Custom Designed Wound Dressing Films, Maryam Mobed-Miremadi, Raki Komarla Nagendra, Sujana Lakshmi Ramachandruni, Jason James Rook, Mallika Keralapura, Michel Goedert

Bioengineering

Custom-designed wound dressing films of chitosan and alginate have been prepared by a casting/solvent evaporation method for hydrophobic therapeutic agent encapsulation. In this parametric study, the propylene glycol (PG) and calcium chloride (CaCl₂) concentrations were varied for chitosan and alginate films, respectively. Mechanical and chemical inter-related responses under observations included thickness (th), elasticity (E), tensile strength (TS), sorption ability (S%) and kinetics of in-vitro drug release, specifically in terms of membrane time to burst (tB) and duration of release (tR). As shown by results of a one tailed t-test significance testing at the 95% confidence interval (α = …

Flow-Induced Voltage Generation Over Monolayer Graphene In The Presence Of Herringbone Grooves, Seung Ho Lee, Young Bok (Abraham) Kang, Wonsuk Jung, Yousung Jung, Soohyun Kim, Hongseok (Moses) Noh

Faculty Publications - Biomedical, Mechanical, and Civil Engineering

While flow-induced voltage over a graphene layer has been reported, its origin remains unclear. In our previous study, we suggested different mechanisms for different experimental configurations: phonon dragging effect for the parallel alignment and an enhanced out-of-plane phonon mode for the perpendicular alignment (Appl. Phys. Lett. 102:063116, 2011). In order to further examine the origin of flow-induced voltage, we introduced a transverse flow component by integrating staggered herringbone grooves in the microchannel. We found that the flow-induced voltage decreased significantly in the presence of herringbone grooves in both parallel and perpendicular alignments. These results support our previous interpretation.

Development Of Vapor Deposited Silica Sol-Gel Particles For A Bioactive Materials System To Direct Osteoblast Behavior, Katherine Lynn Snyder

Dissertations, Master's Theses and Master's Reports - Open

Tissue engineering and regenerative medicine have emerged in an effort to generate replacement tissues capable of restoring native tissue structure and function, but because of the complexity of biologic system, this has proven to be much harder than originally anticipated. Silica based bioactive glasses are popular as biomaterials because of their ability to enhance osteogenesis and angiogenesis. Sol-gel processing methods are popular in generating these materials because it offers: 1) mild processing conditions; 2) easily controlled structure and composition; 3) the ability to incorporate biological molecules; and 4) inherent biocompatibility. The goal of this work was to develop a bioactive …

A Hierarchical Method For Removal Of Baseline Drift From Biomedical Signals: Application In Ecg Analysis, Yurong Luo, Rosalyn H. Hargraves, Ashwin Belle, Ou Bai, Xuguang Qi, Kevin R. Ward, Michael Paul Pfaffenberger, Kayvan Najarian

Computer Science Publications

Noise can compromise the extraction of some fundamental and important features from biomedical signals and hence prohibit accurate analysis of these signals. Baseline wander in electrocardiogram (ECG) signals is one such example, which can be caused by factors such as respiration, variations in electrode impedance, and excessive body movements. Unless baseline wander is effectively removed, the accuracy of any feature extracted from the ECG, such as timing and duration of the ST-segment, is compromised. This paper approaches this filtering task from a novel standpoint by assuming that the ECG baseline wander comes from an independent and unknown source. The technique …

Pure Component Adsorption Of Methane, Ethylene, Propylene And Carbon Dioxide In Silicalite, Qianqian Zhou

ETD Archive

Adsorption isotherms are measured for pure methane, ethylene, propylene and carbon dioxide in silicalite. Isotherm data are collected using a volumetric method at three different temperatures of 10C, 35C and 65C at pressure up to 100psi. The Virial equation and Langmuir equation have been applied to represent excess amount adsorbed in each pure component system. The binary adsorption equilibrium for various mixtures are predicted from the pure component adsorption data, using the Ideal Adsorption Solution Theory (IAST)

State Estimation Based On Nested Particle Filters, Swathi Srinivasan

ETD Archive

In reality many processes are nonlinear and in order to have a knowledge about the true process conditions, it is important to make decisions based on the state of the system. Process measurements such as pressure, temperature, and pH, are available at time instances and this information is necessary in order to obtain the state of the system. Filtering is a state estimation technique by which the estimate is obtained at a time instant, given the process measurements at their respective time instances. Several lters have been developed so far for the estimation of the states of the system. Kalman …

Amelogenin Peptide Extract Increases Differentiation And Angiogenic And Local Factor Production And Inhibits Apoptosis In Human Osteoblasts, Rene Olivares-Navarrete, Sharon L. Hyzy, Argelia Almaguer-Flores, Corinna Mauth, Anja C. Gemperli, Barbara D. Boyan, Zvi Schwartz

Biomedical Engineering Publications

Enamel matrix derivative (EMD), a decellularized porcine extracellular matrix (ECM), is used clinically in periodontal tissue regeneration. Amelogenin, EMD’s principal component, spontaneously assembles into nanospheres in vivo, forming an ECM complex that releases proteolytically cleaved peptides. However, the role of amelogenin or amelogenin peptides in mediating osteoblast response to EMD is not clear. Human MG63 osteoblast-like cells or normal human osteoblasts were treated with recombinant human amelogenin or a 5 kDa tyrosine-rich amelogenin peptide (TRAP) isolated from EMD and the effect on osteogenesis, local factor production, and apoptosis assessed. Treated MG63 cells increased alkaline phosphatase specific activity and levels of …

The Effects Of Toning Shoes On The Postural Stability Of Women, Kevin Farley, Audrey Niverson, Renee Rogge

Rose-Hulman Undergraduate Research Publications

Postural stability is the ability to maintain an upright posture and to keep the center of pressure (COP) within the limits of the body’s base of support. It is maintained through the dynamic integration of muscle activity and joint position. The foot, and therefore footwear, also plays a critical role in postural stability. The goal of this study is to determine the effects of toning shoes on the postural stability of women.