Engineering Commons^™

Inverted Cone Convolutional Neural Network For Deboning Mris, Oliver John Palumbo

Theses and Dissertations

Data plenitude is the power but also the bottleneck for data-driven approaches, including neural networks. In particular, Convolutional Neural Networks (CNNs) require an abundant database of training images to achieve a desired high accuracy. Current techniques employed for boosting small datasets are data augmentation and synthetic data generation, which suffer from computational complexity and imprecision compared to original datasets. In this thesis, we intercalate prior knowledge based on the temporal relation between the images in the third dimension. Specifically, we compute the gradient of subsequent images in the dataset to remove extraneous information and highlight subtle variations between the images. …

Muscle Activation Via Mri: Comparison Of Techniques, Logan Thorneloe, Neal Bangerter

Journal of Undergraduate Research

Muscle functional magnetic resonance imaging (mfMRI) is a proven concept to non-invasively identify muscle activation1. Noninvasively identifying muscle activation can be used to diagnose metabolic muscle disease, identify and pinpoint muscular dysfunction, observe muscle deterioration in aging individuals, and help researchers better understand the biological foundation of musclechemistry2. Current proven methods of mfMRI include analyzing pre- and post-exercise T2-weighted images, T2 maps, and sodium images of muscle; however, there is considerable debate around the best of these techniques1-4. We tested these three imaging techniques to determine which has the greatest post-exercise shift in signal intensity.

Neurostimulator With Waveforms Inspired By Nature For Wearable Electro-Acupuncture, Jose Aquiles Parodi Amaya

LSU Doctoral Dissertations

The work presented here has 3 goals: establish the need for novel neurostimulation waveform solutions through a literature review, develop a neurostimulation pulse generator, and verify the operation of the device for neurostimulation applications.

The literature review discusses the importance of stimulation waveforms on the outcomes of neurostimulation, and proposes new directions for neurostimulation research that would help in improving the reproducibility and comparability between studies.

The pulse generator circuit is then described that generates signals inspired by the shape of excitatory or inhibitory post-synaptic potentials (EPSP, IPSP). The circuit analytical equations are presented, and the effects of the circuit …

Happy Hours Are A Godsend, Krishna Pakala, Diana Bairaktarova, Samantha Schauer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Office hours that happen in a virtual environment are called virtual office hours. This type of student-faculty interaction can be easily hosted from a faculty computer/mobile device/tablet. With an invitation, students can login to the online session and join their instructor and peers in a virtual space. Using mobile technologies, students can join virtual office hours from a variety of locations including a library, outdoors, on a commute ride home, while caring for children, eating dinner, and even while grocery shopping. Virtual office hours allow for more flexibility of student-faculty interaction. They are an alternative to traditional office hours. This …

Work In Progress: First-Year Engineering College Students: Value Created From Participating In A Living/Learning Community, Krishna Pakala, Kim M.B. Tucker, Samantha Schauer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

This Work in Progress paper examines how to capture the perceived value obtained from firstyear engineering college students (FYECS) from participating in the Engineering and Innovation Residential College (EIRC), a living learning community (LLC). People are social by nature and thrive through collaborating and living with others who share similar passions; however, oftentimes FYECS do not have a community of like-minded peers where support, innovation, discourse, and collaboration can take place. Adding to FYECS struggles is the fact that many do not have a mentor in their related field and are unable to start building their professional repertoire, network, technical …

Advanced Design And Fabrication Of Prosthetic And Medical Devices, Gaffar Gailani, Andy S. Zhang, Yu Wang, Sidi Berri

Publications and Research

The department of Mechanical Engineering and Industrial Design Technology (MEIDT) at City Tech is seeking to strengthening the skills of its students in manufacturing and design to respond to the urgent needs of the manufacturing industry in general and the prosthetic and medical devices (P&MD) industry in particular to high-skilled engineers and technicians and to provide a national model for advanced technology education. Medical Devices will include: (a) Surgical and Medical Instruments; (b) Surgical Appliances and Supplies; and (c) Dental Equipment and Supplies. The educational merit of the project is that it motivates students to do engineering rather than studying …

Scale Optimization Of Milkguard Biosensor For Detecting E. Coli In Human Breast Milk, Jerard Roniel Del Rosario Madamba

Bioengineering Master's Theses

Milkguard is an alginate-based biosensor developed to detect E. coli in human breast milk via the metabolism of X-gal (5-Bromo-4-Chloro-3-Indolyl β-D-Galactopyranoside) by β-galactosidase. In order to deconvolute metabolic reproducibility from scaling laws, the commercial enzyme β-galactosidase was used to mimic the biological function of the bacterial lac operon. Downscaling was explored as an optimization of the biosensor design based on numerical solutions to Fickian-based diffusion models. The characterization of large capsules (d ≅ 3 mm) and atomized microcapsules (d ≅ 300 ± 60 μm) yielded size-specific Michaelis-Menten constants. Small capsules (K_m = 3.6 x 10^-4 M; Vmax ’’ …

Unravel The Cellular Biophysical Dynamics Of Spatial Constraint-Induced Membrane Blebbing And 3d Migration Using A Microfluidic Platform And Data-Driven Mathematical Modeling, Yu Huang

Funded Research Records

No abstract provided.

Epic: Examining Patch Impedance Characteristics, Shane Buck, Jyotsna Gopinath, Kyle Markfield

Interdisciplinary Design Senior Theses

In the United States, approximately one in 4 adults have at least one chronic illness, making up approximately 84% of US Healthcare Spending. Unfortunately, 50% of patients with chronic diseases do not take their medication properly and as such spend more money trying to get better – approximately $100 billion in annual preventable costs. One solution to this issue is digital medicine as it allows for the monitoring of patient medicine consumption.

Our industry partner has developed a three-part digital medicine system with the aim of allowing patients with chronic health issues to better reach their health goals through monitoring …

Justrun - Social Gps Running Game, Riley Bergin, Maggie Cai, Simran Judge, Grace Ling

Interdisciplinary Design Senior Theses

With advances in technology allowing people to live more sedentary lives, more and more people are struggling to live a healthy active lifestyle. In the efforts to combat unhealthy styles of living, we wish to introduce a mobile app that takes advantage of motivational game mechanics to motivate players will make go on runs regularly.

Anti-Infective Mechanism-Based Drug Discovery Via Sortase A, Huong Chau, Alice Matsuda, Leepakshi Johar

Bioengineering Senior Theses

Sortase A is a transmembrane protein prominent in gram-negative bacterial strains. It is a virulence factor that anchors other proteins, which facilitate MRSA infections. In the long term, we plan to utilize this protein to create anti-infective drugs as antibiotic resistance continues to become a global health issue. Starting with five NIH drug candidates, we decided to first study Sortase A with B12 due to its historical past of ancient civilizations using natural sources of B12 to treat infections. Our senior design is further centered around understanding how vitamin B12 interacts with Sortase A in vitro, particularly the binding affinity …

Developing A Control System To Better Understand The Effects Of Pyruvate Decarboxylase Activity On Clostridium Thermocellum Metabolism, Nicholas Cervenka

ENGS 88 Honors Thesis (AB Students)

In order for cellulosic biofuels from Clostridium thermocellum to be commercially viable, the ethanol yield and titer of the microbe must be increased. To accomplish this, it has been suggested to introduce the Pyruvate Decarboxylase (PDC) enzyme into C. thermocellum. In order to demonstrate effects on ethanol production by PDC prior to genetic modification, a cell free system (CFS) has been developed. A purified enzyme system was developed with the CFS to function as a control. Using the purified enzyme system, PDC from Saccharomyces cerevisiae was demonstrated to be a good candidate for further testing in the CFS.

A Physical And Computational Reverse-Engineering Approach To Determine Dimensional Change And Its Relationship To Oxidation In Retrieved Orthopedic Implants, Josephine Kalshoven

ENGS 88 Honors Thesis (AB Students)

Oxidation of the Ultra-High Molecular Weight Polyethylene (UHMWPE) tibial inserts of total knee arthroplasty devices is a major factor underlying multiple modes of failure for these devices, including delamination, wear, and fracture. Previous research has demonstrated that oxidation of UHMWPE is driven by a high concentration of free radicals in the polyethylene. However, even new devices created with undetectable amounts of free radicals are oxidizing in vivo. One theory is that, in the absence of residual free radicals, oxidation is facilitated by absorbed species (e.g. lipids, ROS) delivered or exacerbated by contact stress. However, no method exists to comprehensively …

Maximizing And Modeling Malonyl-Coa Production In Escherichia Coli, Tatiana Thompson Silveira Mello

LSU Master's Theses

In E. coli, fatty acid synthesis is catalyzed by the enzyme acetyl-CoA carboxylase (ACC), which converts acetyl-CoA into malonyl-CoA. Malonyl-CoA is a major building block for numerous of bioproducts. Multiple parameters regulate the homeostatic cellular concentration of malonyl-CoA, keeping it at a very low level. Understanding how these parameters affect the bacterial production of malonyl-CoA is fundamental to maximizing it and its bioproducts. To this end, competing pathways consuming malonyl-CoA can be eliminated, and optimal nutritional and environmental conditions can be provided to the fermentation broth. Most previous studies utilized genetic modifications, expensive consumables, and high-cost quantification methods, making …

Conference Program, Erin Buckley, Christophe Moser, Brian Pogue, David Sampson

Advances in Optics for Biotechnology, Medicine and Surgery XVI [2019]

No abstract provided.

Compositional Optimization Of Amyloid-Graphene Oxide Nanohybrids For Biomaterials, Claire L. Drewery

Materials Engineering

Amyloid nanofibrils are natural materials capable of self-assembling into precise structures with tunable functionalities, while exhibiting excellent mechanical properties. In combination with highly conductive graphene oxide (GO), the 1-D amyloid nanofibrils and 2-D nanosheets of GO can produce a robust and bio-functional nanohybrid, hypothesized to exhibit multi-domain functional properties useful for enzyme sensing, water purification, drug delivery, and tissue scaffolding applications. Here, we examine the properties of an amyloid-graphene oxide nanohybrid film made with amyloids derived from hen egg white lysozymes in an attempt to explore the diverse toolbox of amyloid derivatives and establish ideal fabrication methods and formulations of …

In Vitro Evaluation Of 3d Printed Polycaprolactone Scaffolds With Angle-Ply Architecture For Annulus Fibrosus Tissue Engineering, Thomas R. Christiani, E Baroncini, Joseph F. Stanzione, Andrea J. Vernengo

Henry M. Rowan College of Engineering Departmental Research

Tissue engineering of the annulus fibrosus (AF) is currently being investigated as a treatment for intervertebral disc degeneration, a condition frequently associated with low back pain. The objective of this work was to use 3D printing to generate a novel scaffold for AF repair that mimics the structural and biomechanical properties of the native tissue. Multi-layer scaffolds were fabricated by depositing polycaprolactone struts in opposing angular orientations, replicating the angle-ply arrangement of the native AF tissue. Scaffolds were printed with varied strut diameter and spacing. The constructs were characterized morphologically and by static and dynamic mechanical analyses. Scaffold surfaces were …

Spatial Frequency Domain Imaging Of Short-Wave Infrared Fluorescence For Biomedical Applications, Joseph P. Leonor

ENGS 88 Honors Thesis (AB Students)

Fluorescence imaging has become a standard in many clinical applications, such as tumor and vasculature imaging. One application that is becoming more prominent in cancer treatment is fluorescence-guided surgery (FGS). Currently, FGS allows surgeons the ability to visually navigate tumors and tissue structures intraoperatively. As a result, they can remove tumor more efficiently while maintaining critical structures within the patient, creating better outcomes and lower recovery times. However, background fluorescence and inability to localize depth create challenges when determining resection boundaries.

Different techniques, such as spatially modulating the illumination and imaging at longer light wavelengths, have been developed to accurately …

Effects Of Glycation On Blood Protein Interactions With Nanomaterials: A Biophysical And Cytotoxicity Study, Karl Baumgartner, Madeline Eiken

Bioengineering Senior Theses

When engineered nanoparticles (NPs) enter into a biological system, the proteins and biomolecules in the system adsorb to the NP surface to form a “protein corona” (PC). The PC greatly influences NP transformations, biological interactions, and cell response. Further complicating the development of NPs for biomedical applications, disease states alter the population of proteins and changes the biophysical features of individual proteins through posttranslational modifications. Here-in, we aim to understand how glycation of the PC, as in uncontrolled diabetes, alters the NP-PC interaction and toxicity by conducting biochemistry and cell toxicity experiments. We focus upon 40 and 80 nm citrate-coated …

Microfluidic Chip For High Efficiency Microinjection Of Caenorhabditis Elegans, Delaney Gray, Alex Hadsell, Jessica Talamantes

Bioengineering Senior Theses

The terrestrial nematode, Caenorhabditis elegans, is an invaluable model organism for the study of molecular and cellular processes due to their small size, rapid generation time, easy cultivation, and invariant cell number. Additionally, 40% of genes known to be associated with human disease have clear orthologs in the C. elegans genome. In C. elegans genetics research, microinjection of genetic material into the worms is critical. Although an established technique, manual microinjection is tedious, low-throughput, and requires an expert researcher. This thesis details a novel microfluidic device designed to perform high-throughput microinjection. This two-layer, PDMS-based chip integrates microfluidic elements to …

Cervis: Cervical Cancer Early Response Visual Identification System, Julia Lanoha, Claire Hultquist, Rosie Mcdonagh, Hallie Mcnamara

Bioengineering Senior Theses

The goal of CERVIS is to make a substantial, positive impact in the cervical cancer screening space through the development of a minimally invasive, cost effective solution that enables women in low-resource settings to test for cervical cancer on a frugal and effective platform. In the developed world, there are a variety of options that can aid in early detection, including Pap smears. However, due to the high cost and laboratory requirements that accompany this procedure, women in low-resource settings rarely have access to this preventative care or regular screenings for cervical cancer. Using new research about the changes in …

Interpolated Perturbation-Based Decomposition As A Method For Eeg Source Localization, Gabriel Zelik Lipof

Master's Theses

In this thesis, the perturbation-based decomposition technique developed by Szlavik [1] was used in an attempt to solve the inverse problem in EEG source localization. A set of dipole locations were forward modeled using a 4-layer sphere model of the head at uniformly distributed lead locations to form the vector basis necessary for the method. Both a two-dimensional and a pseudo-three-dimensional versions of the model were assessed with the two-dimensional model yielding decompositions with minimal error and the pseudo-three-dimensional version having unacceptable levels of error. The utility of interpolation as a method to reduce the number of data points to …

Marine Chemistry Control System, Natalie Weisenburger, Kathryn Turk, Julio Sierra

Biomedical Engineering

The aim of this project is to design a control system that manipulates different variables of ocean chemistry including pH, temperature, DO, N2 , and CO2 content for research by ocean chemists of marine species and their environments in 2, 5 gallon tanks.

A Two Alternative Forced Choice Method For Assessing Vibrotactile Discrimination Thresholds In The Lower Limb, Riccardo Iandolo, Marta Caré, Valay Shah, Simona Schiavi, Giula Bommarito, Giacomo Boffa, Psiche Giannoni, Matilde Inglese, Leigh A. Mrotek, Robert A. Scheidt, Maura Casadio

Biomedical Engineering Faculty Research and Publications

The development of an easy to implement, quantitative measure to examine vibration perception would be useful for future application in clinical settings. Vibration sense in the lower limb of younger and older adults was examined using the method of constant stimuli (MCS) and the two-alternative forced choice paradigm. The focus of this experiment was to determine an appropriate stimulation site on the lower limb (tendon versus bone) to assess vibration threshold and to determine if the left and right legs have varying thresholds. Discrimination thresholds obtained at two stimulation sites in the left and right lower limbs showed differences in …

Cooking Hand Multi-Tool, Amanda D. Meares, Amy H. Wilson, Ethan G. Littlejohn, Duania A. Evans

Biomedical Engineering

The purpose of this project was to devise a solution for Jorge Segura, a US Marine who was wounded in Afghanistan and had to have his non-dominant arm amputated above the elbow. His current prosthetic attachments are not suited to cooking tasks, so he needed a way to cook more effectively with either prosthetic attachments or accessibility devices. The main tasks that he needed help with was holding down food on cutting boards and stabilizing pots, pans, and bowls especially when stirring. After background research, exploring commercially available devices, and talking with our challenger, our solution was to design three …

Nano Fab Lab 63, Brian K. Deemer, Josh Clemons, Nick Brodine, Delaney Fitzsimmons

Mechanical Engineering

Lawrence Livermore National Laboratories (LLNL) has several steps in the production process for ceramic nanofiber tubes that they would like to improve - electrospinning, cutting, rolling, sealing and heat treating. We undertook the challenge to deliver LLNL with a semi-automated process that efficiently integrates the steps of cutting, rolling, and sealing to save time and improve control over end dimensions. In this document, we discuss the technical background of the manufacturing steps currently followed to create nanofiber tubes, identify which steps are incorporated in our prototype and explain how they will interface with one another, define the design requirements, present …

Microscope System, Virginia Brannaman, Gavin Shavey, Ricardo Lasa

Biomedical Engineering

This project aims to improve upon the current microscope stand for the Olympus compound microscope in the Microcirculation and Vascular Regeneration (MaVR) laboratory in order to minimize angular deflection of the microscope objective with respect to surgical stage.

Modulation Of Biological Responses To 2 Ns Electrical Stimuli By Field Reversal, Esin B. Sözer, P. Thomas Vernier

Bioelectrics Publications

Nanosecond bipolar pulse cancellation, a recently discovered Phenomenon, is modulation of the effects of a unipolar electric pulse exposure by a second pulse of opposite polarity. This attenuation of biological response by reversal of the electric field direction has been reported with pulse durations from 60 ns to 900 ns for a wide range of endpoints, and it is not observed with conventional electroporation pulses of much longer duration (> 100 mu s) where pulses are additive regardless of polarity. The most plausible proposed mechanisms involve the field-driven migration of ions to and from the membrane interface (accelerated membrane discharge). …

Bioprinting Of 3d Perfusable Structures Using An Extrusion-Based System, Prabhuti Kharel

Theses and Dissertations

Bioprinting is a technique of creating 3D cell laden structures by accurately dispensing biomaterial to form complex synthetic tissue. Bioprinting is a process of additive manufacturing where the cell functionality and viability is preserved within the printed structure. Bioprinting is a promising alternative to produce physiologically relevant 3D structures that mimic the native tissue. However, fabrication of complex structures with vascularization has been a major challenge in bioprinting. To overcome this challenge sacrificial printing in combination with fugitive inks has been explored to create vascularize structures. The objective of this study is to fabricate hollow channels within the bioprinted structure …

Study Of Paper Microbial Fuel Cells For Use In On-Site Wastewater Testing, William A. Tolmasoff

Master's Theses

This study demonstrated a technique for fabricating simple, low-cost Paper Microbial fuel cells (PMFC’s) in the model of a previous study to, for the first time, produce voltage from wastewater effluent. The PMFC’s were created by stacking and gluing the main components of an MFC together: reservoir layer; anode; cation exchange membrane (CEM); air cathode. A wax printer was used to create the hydrophobic borders of the PMFC’s on filter paper, and graphite paint was applied to the paper to create the anode. The CEM’s considered were filter paper, wax, and Nafion, with Nafion being the most efficient. Finally, the …