Engineering Commons^™

The Effect Of Discrete Visual Perturbations On Balance Control During Gait, Lara I. Riem, Brian D. Schmit, Scott A. Beardsley

Biomedical Engineering Faculty Research and Publications

Immersive virtual reality provides a safe and costeffective approach to administrating balance disruption during ambulation. Previous research has explored the effects of applying continuous perturbations in a virtual environment to challenge balance. This pilot study investigates the ability to disrupt balance with discrete visual perturbations during ambulation in healthy young adults. During the study participants walked on a treadmill within a virtual environment. As they walked the entire visual scene was intermittently shifted to the left or right 1 meter over 1 second. The results demonstrate a significant decrease in step length (𝑝 <; 0.05) and change in center of mass excursion (𝑝 <; 0.05) across participants (𝑁=13). Changes in gait lasted up to three steps after application, suggesting a consistent challenge to dynamic balance control as a result of the discrete visual perturbation. Further, participants did not demonstrate a reduction in response to the discrete visual perturbation with repeated exposure. The results indicate that discrete visual perturbations of a virtual scene can be used to challenge gait and modulate center of mass sway. The use of visual perturbations within a virtual environment to challenge dynamic balance could provide a safer and more affordable avenue for balance rehabilitation by reducing the need for systems that physically perturb balance.

Changes In Lumbo-Pelvic Coordination Of Individuals With And Without Low Back Pain When Wearing A Hip Orthosis, Matthew T. Ballard, Colin Drury, Babak Bazrgari

Biomedical Engineering Faculty Publications

Individuals with low back pain demonstrate an abnormal lumbo-pelvic coordination compared to back-healthy individuals. This abnormal coordination presents itself as a reduction in lumbar contributions and an increase in pelvic rotations during a trunk forward bending and backward return task. This study investigated the ability of a hip orthosis in correcting such an abnormal lumbo-pelvic coordination by restricting pelvic rotation and, hence increasing lumbar contributions. The effects of the hip orthosis on the lumbo-pelvic coordination were investigated in 20 low back pain patients and 20 asymptomatic controls. The orthosis reduced pelvic rotation by 12.7° and increased lumbar contributions by 11%. …

Photo-Characterization Of Selective Luminescent Protein Aggregate Sensors - Oligo-P-Phenylene Ethynylene (Opes), Florencia A. Monge

Biomedical Engineering ETDs

Neurodegenerative diseases such as Alzheimer’s disease, Parkinson’s disease,

and related tauopathies, are a global health care challenge due to the lack of early

treatment and diagnostic options. These diseases take an emotional and physical

toll on patients, caretakers, and a rather large economic toll on taxpayer-based

health care systems. The pathologies of these diseases are characterized by the

aggregation of misfolded proteins, amyloid-β (Aβ) and tau, into β-sheet rich

structures called amyloids. Research has found that the presence of protein

aggregates predates cognitive symptoms by years. Current diagnostic tools are

based on the detection of these amyloid aggregates, historically by …

Polymeric Nanoparticles As An Antioxidant Delivery System For Age-Related Eye Disease, Sean M. Swetledge

LSU Doctoral Dissertations

Advantages of polymeric nanoparticles as ocular drug delivery systems include controlled release, enhanced drug stability and bioavailability, and specific tissue targeting. Nanoparticle properties such as hydrophobicity, size, and charge, mucoadhesion, as well as administration route and suspension media affect their ability to overcome ocular barriers and distribute in the eye, and must be carefully designed for specific target tissues and ocular diseases. A review was conducted to serve as a guide to optimizing polymeric nanoparticle delivery systems for ocular drug delivery by discussing the effects of nanoparticle composition and administration method on their ocular penetration, distribution, elimination, toxicity, and efficacy, …

Olfaction Modulates Inter-Subject Correlation Of Neural Responses, Paul Deguzman, Anshul Jain, Matthias H. Tabert, Lucas C. Parra

Publications and Research

Odors can be powerful stimulants. It is well-established that odors provide strong cues for recall of locations, people and events. The effects of specific scents on other cognitive functions are less well-established. We hypothesized that scents with different odor qualities will have a different effect on attention. To assess attention, we used Inter-Subject Correlation of the EEG because this metric is strongly modulated by attentional engagement with natural audiovisual stimuli.We predicted that scents known to be “energizing” would increase Inter-Subject Correlation during watching of videos as compared to “calming” scents. In a first experiment, we confirmed this for eucalyptol and …

Discovery Of A Novel Analogue Of Fr901533 And The Corresponding Biosynthetic Gene Cluster From Streptosporangium Roseum No. 79089, Fuchao Xu, Yonghong Liang, Jie Ren, Siyuan Wang, Jixun Zhan

Biological Engineering Faculty Publications

FR901533 (1, also known as WS79089B), WS79089A (2), and WS79089C (3) are polycyclic aromatic natural products with promising inhibitory activity to endothelin-converting enzymes. In this work, we isolated five tridecaketide products from Streptosporangium roseum No. 79089, including 1-3, benaphthamycin (4) and a novel FR901533 analogue (5). The structure of 5 was characterized based on spectroscopic data. Compared to the major product 2, the new compound 5 has an additional hydroxyl group at C-12 and an extra methyl group at the 13-OH. The configuration of C-19 of these compounds …

Β-Amyloid And Tau Drive Early Alzheimer's Disease Decline While Glucose Hypometabolism Drives Late Decline, Tyler C. Hammond, Xin Xing, Chris Wang, David Ma, Kwangsik Nho, Paul K. Crane, Fanny Elahi, David A. Ziegler, Gongbo Liang, Qiang Cheng, Lucille M. Yanckello, Nathan Jacobs, Ai-Ling Lin

Sanders-Brown Center on Aging Faculty Publications

Clinical trials focusing on therapeutic candidates that modify β-amyloid (Aβ) have repeatedly failed to treat Alzheimer’s disease (AD), suggesting that Aβ may not be the optimal target for treating AD. The evaluation of Aβ, tau, and neurodegenerative (A/T/N) biomarkers has been proposed for classifying AD. However, it remains unclear whether disturbances in each arm of the A/T/N framework contribute equally throughout the progression of AD. Here, using the random forest machine learning method to analyze participants in the Alzheimer’s Disease Neuroimaging Initiative dataset, we show that A/T/N biomarkers show varying importance in predicting AD development, with elevated biomarkers of Aβ …

Automatic Detection Of Dynamic And Static Activities Of The Older Adults Using A Wearable Sensor And Support Vector Machines, Jian Zhang, Rahul Soangra, Thurmon E. Lockhart

Physical Therapy Faculty Articles and Research

Although Support Vector Machines (SVM) are widely used for classifying human motion patterns, their application in the automatic recognition of dynamic and static activities of daily life in the healthy older adults is limited. Using a body mounted wireless inertial measurement unit (IMU), this paper explores the use of an SVM approach for classifying dynamic (walking) and static (sitting, standing and lying) activities of the older adults. Specifically, data formatting and feature extraction methods associated with IMU signals are discussed. To evaluate the performance of the SVM algorithm, the effects of two parameters involved in SVM algorithm—the soft margin constant …

Thermoresponsive Nanogels Based On Different Polymeric Moieties For Biomedical Applications, Sobhan Ghaeini-Hesaroeiye, Hossein Razmi Bagtash, Soheil Boddohi, Ebrahim Vasheghani-Farahani, Esmaiel Jabbari

Faculty Publications

Nanogels, or nanostructured hydrogels, are one of the most interesting materials in biomedical engineering. Nanogels are widely used in medical applications, such as in cancer therapy, targeted delivery of proteins, genes and DNAs, and scaffolds in tissue regeneration. One salient feature of nanogels is their tunable responsiveness to external stimuli. In this review, thermosensitive nanogels are discussed, with a focus on moieties in their chemical structure which are responsible for thermosensitivity. These thermosensitive moieties can be classified into four groups, namely, polymers bearing amide groups, ether groups, vinyl ether groups and hydrophilic polymers bearing hydrophobic groups. These novel thermoresponsive nanogels …

Analysis Of Information Security Methods In Biosystems And Application Of Intelligent Tools In Information Security Systems, Sherzod Sayfullaev

Chemical Technology, Control and Management

In this paper, the methods of information protection in bio systems are studied. The paper considers the use of intelligent tools in information security systems and the use of adaptive information security systems. Several articles on the field of information protection in bio systems are analyzed. Disadvantages and advantages of neural network technologies in modern information security systems are described. The characteristics of bio systems and the specificity of DNA, the main features of the DNA code that provide information security and functional stability of bio systems data protection structure. Application of intelligent tools to create a comprehensive adaptive protection …

A Comparative Study Of Sleep And Diurnal Patterns In House Mouse (Mus Musculus) And Spiny Mouse (Acomys Cahirinus), Chanung Wang, Lauren E. Guerriero, Dillon M. Huffman, Asma'a A. Ajwad, Trae C. Brooks, Sridhar Sunderam, Ashley W. Seifert, Bruce F. O'Hara

Biomedical Engineering Faculty Publications

Most published sleep studies use three species: human, house mouse, or Norway rat. The degree to which data from these species captures variability in mammalian sleep remains unclear. To gain insight into mammalian sleep diversity, we examined sleep architecture in the spiny basal murid rodent Acomys cahirinus. First, we used a piezoelectric system validated for Mus musculus to monitor sleep in both species. We also included wild M. musculus to control for alterations generated by laboratory-reared conditions for M. musculus. Using this comparative framework, we found that A. cahirinus, lab M. musculus, and wild M. musculus were …

Red Blood Cell Dynamics On Non-Uniform Grids Using A Lattice Boltzmann Flux Solver And A Spring-Particle Red Blood Cell Model, Brendan Walsh

Doctoral

The Computational Haemodynamics Research Group (CHRG) in Technological University Dublin is developing a computational fluid dynamics (CFD) software package aimed specifically at physiologically-realistic modelling of blood flow. A physiologically-realistic model of blood flow involves calculating the deformation of individual red blood cells (RBCs) and the contribution of this deformation to the overall blood flow. The CHRG has developed an enhanced spring-particle RBC structural model that is capable of modelling the full stomatocyte-discocyteechinocyte (SDE) transformation. This RBC model, incorporated into a fluid dynamics solver, will provide a physiologically-realistic blood flow model. In this work the overall plasma flow is modelled using …

Secretion Of Proteins And Antibody Fragments From Transiently Transfected Endothelial Progenitor Cells, Loree Heller, Reynald Thinard, Melanie Chevalier, Sezgi Arpag, Yu Jing, Ruth Greferath, Richard Heller, Claude Nicolau

Bioelectrics Publications

In neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, multiple sclerosis and amyotrophic lateral sclerosis, neuroinflammation can lead to blood-brain barrier (BBB) breakdown. After intravenous or intra-arterial injection into mice, endothelial progenitor cells (EPCs) home to the damaged BBB to promote neurovascular repair. Autologous EPCs transfected to express specific therapeutic proteins offer an innovative therapeutic option. Here, we demonstrate that EPC transfection by electroporation with plasmids encoding the reporter protein GFP or an anti-beta-amyloid antibody fragment (Fab) leads to secretion of each protein. We also demonstrate the secreted anti-beta-amyloid Fab protein functions in beta-amyloid aggregate solubilization.

How Does Robotic Surgery Influence Communication, Leadership, And Team Outcomes? A Multimethod Examination., Jordan E. Rogers

Doctoral Dissertations and Master's Theses

The practice of delivering surgical care has evolved to be less invasive to the patients undergoing surgery. Minimally-invasive surgery can be practiced through traditional laparoscopic methods as well as with robotic technology that displaces the surgeon from the operating table. Robotic surgery has been cited to be safer and more effective than traditional laparoscopic surgery; however, little research has endeavored to investigate the role of surgical modality upon aspects of teamwork. This dissertation contributes to the human factors and teamwork literature by evaluating how surgical modality may influence communication, shared leadership, and team outcomes. Multiple methods were employed to study …

Cis-Resveratrol Upregulates Tyrosyl-Trna Synthetase And Inhibits The Proliferation Of Select Breast Cancer Cell Lines, Marion Cone Hope Iii

Theses and Dissertations

Breast cancer is one of the most commonly occurring cancers in women. 70% of breast cancer patients express ERα and are treated with tamoxifen (Tam), a drug that is used to directly target ERα. However, 20-30% of cancer patients develop a resistance to Tam. This resistance leads to a worse prognosis and other treatments such as DNA damaging drugs or radiation to eliminate these cells. Resveratrol (RSV) is a polyphenolic- compound found in plants such as grapes and hellebore and is known to evoke anti-cancer effects. While natural resveratrol exists as a mixture of both cis- and trans- isomers, so …

An Improved Bone Age Assessment Using Advanced Image Processing And Deep Learning Approach, Kim Meng Liang

Student Works (2020-2029)

Pediatricians often apply bone age assessment to measure the skeletal maturity of children and to predict the future height. These discrepancies are good indicators for diagnosing growth disorders. Normally, left hand skeletal is employed in this assessment. The low quality of ossification sites of carpals deteriorates the pediatrician’s visibility in inspecting the pertinent radiographic manifestations. This in turn affects the bone age assessment. Therefore, we have to enhance the quality before assessing them. Histogram equalization is one of the contrast enhancement techniques that suit this type of enhancement. Existing histogram equalizations, however, are confronting with problems in preserving the brightness …

Suspended Carbon Nanowire Biosensor For Rapid And Label-Free Salmonella Detection, Thiha Aung

Student Works (2020-2029)

Carbon, the building block life, is rapidly becoming the building block of nextgeneration electronics and sensor materials. Of many ways to handle nanocarbon materials, Carbon Microelectromechanical Systems (C-MEMS) emerges as a unique way for top-down fabrication of three-dimensional carbon micro to nanostructures. In this work, the use of C-MEMS techniques in nanowire biosensor fabrication is explored. Two main hindrances in the use of C-MEMS carbon structures for biosensing lie in miniaturization to nanoscale sensor material and inertness of as-fabricated carbon. This dissertation presents ways to overcome these limitations. First, miniaturization to patterned sub-100 nm carbon nanowires was achieved by optimization …

Development And Optimization Of Imaging And Image Quantification Techniques For Tissue-Engineered Blood Vessel Mimics, Ashley Turcott

Master's Theses

Blood vessels mimics (BVMs) are tissue-engineered blood vessels used to test vascular devices in an environment that mimics some simple anatomical factors of native blood vessels. It is important to accurately and consistently assess tissue-engineered blood vessels, although there is currently a lack of standardization in Cal Poly’s Tissue Engineering Lab and in the entirety of the field. The goal of this thesis was to develop and optimize imaging and image quantification techniques for tissue-engineered blood vessels.

The first aim of this thesis optimized and compared imaging and assessment techniques for electrospun scaffolds. Images from different SEMs were compared to …

Processing-Structure-Property Relationships Of Biopolyester/Zinc Oxide Fibrous Scaffolds Engineered By Centrifugal Spinning, Victoria Padilla-Gainza, Heriberto Rodríguez-Tobías, Graciela Morales, Antonio Ledezma-Pérez, Carmen Alvarado-Canché, Cristobal Rodriguez, Robert Gilkerson, Karen Lozano

Mechanical Engineering Faculty Publications

This study addresses the processing of nonwoven fibrous materials obtained by centrifugal spinning method, namely Forcespinning; a high yield and low production cost technique little explored in this field. Poly(D, L-lactic acid) (PDLLA) and poly(3-hydroxybutyrate) (PHB) were used as matrices and reinforced with zinc oxide nanoparticles (n-ZnO). The morphology, mechanical, and thermal performance of the developed composites were analyzed as well as the antibacterial effect of n-ZnO. Fibrous materials with n-ZnO concentrations of 1, 3, and 5 wt. % for PDLLA and 1 and 3 wt. % for PHB were evaluated. The results showed that the incorporation of n-ZnO produces …

Fabrication And Characterization Of Flexible Three-Phase Zno-Graphene-Epoxy Electro-Active Thin-Film Nanocomposites: Towards Applications In Wearable Biomedical Devices, Mandeep Singh, Sanjeev Kumar, Shervin Zoghi, Debaki Sarcar, Saquib Ahmed, Shaestagir Chowdhury, Sankha Banerjee

Mechanical and Materials Engineering Faculty Publications and Presentations

Perovskite oxides have been used as sensors, actuators, transducers, for sound generation and detection, and also in optical instruments and microscopes. Perovskite halides are currently considered as optoelectronic devices such as solar cells, photodetectors, and radiation detection, but there are major issues with stability, interfacial recombination, and electron/hole mobility. The following work looks into the fabrication of non-toxic ZnO-based lead-free alternatives to perovskite oxides for use as secondary sensors or electron transport layers along with perovskite halides for application in stacked biomedical wearable devices. Three-phase, lead-free, Zinc Oxide-Graphene-Epoxy electroactive nanocomposite thin films were fabricated. The volume fraction of the Graphene …

The Neural Foundations Of Handedness: Insights From A Rare Case Of Deafferentation, S.A.L. Jayasinghe, F. R. Sarlegna, Robert A. Scheidt, R. L. Sainburg

Biomedical Engineering Faculty Research and Publications

The role of proprioceptive feedback on motor lateralization remains unclear. We asked whether motor lateralization is dependent on proprioceptive feedback by examining a rare case of proprioceptive deafferentation (GL). Motor lateralization is thought to arise from asymmetries in neural organization, particularly at the cortical level. For example, we have previously provided evidence that the left hemisphere mediates optimal motor control that allows execution of smooth and efficient arm trajectories, while the right hemisphere mediates impedance control that can achieve stable and accurate final arm postures. The role of proprioception in both of these processes has previously been demonstrated empirically, bringing …

Task-Specific Versus Impairment-Based Training On Locomotor Performance In Individuals With Chronic Spinal Cord Injury: A Randomized Crossover Study, Jennifer K. Lotter, Christopher E. Henderson, Abby Plawecki, Molly E. Holthus, Emily H. Lucas, Marzieh M. Ardestani, Brian D. Schmit, George Hornby

Biomedical Engineering Faculty Research and Publications

Background. Many research studies attempting to improve locomotor function following motor incomplete spinal cord injury (iSCI) focus on providing stepping practice. However, observational studies of physical therapy strategies suggest the amount of stepping practice during clinical rehabilitation is limited; rather, many interventions focus on mitigating impairments underlying walking dysfunction. Objective. The purpose of this blinded-assessor randomized trial was to evaluate the effects of task-specific versus impairment-based interventions on walking outcomes in individuals with iSCI. Methods. Using a crossover design, ambulatory participants with iSCI >1-year duration performed either task-specific (upright stepping) or impairment-based training for up to 20 sessions over ≤6 …

Identification Of Microscopy Cell Images By Using Convolutional Neural Network Application, Ajis Norfatin Farisya

Student Works (2020-2029)

Breast cancer has been the major factor of cancer death and the second main cause of women’s deaths in the world. The false positive results of this cancer cell detection during the screening test leads to false treatment and emotional disturbance of the patients. Thus, breast cancer cell lines (MCF7) is used as the microscopy image samples together with the Human Bone Osteosarcoma Epithelial Cells (U2OS), and Human Hepatocyte as control to study the effectiveness of convolutional neural network (CNN) as a method of image recognition. The objectives of this study are to determine the ability of convolutional neural network …

Synthesis And Characterization Of Novel Silicone Hydrogel Biomaterials With Advanced Properties For Ocular Drug Delivery, Liana D. Wuchte

Theses and Dissertations

There is a need for next generation silicone hydrogel biomaterials with greater compositional flexibility and tailorable material properties for advanced manufacturing and new applications for ocular drug delivery. Poly(DMS-R11-co-TRIS-co-DMA-co-PEG200DMA-co-DEAEM-co-DADMAC) silicone hydrogel contact lenses were synthesized with macromolecular memory and showed 7-day in vitro release of latanoprost acid via a microfluidic platform with controlled release and improved drug payload capacity compared to control lenses. Six newly synthesized silicone macromers were then incorporated into contact lens formulations for the first time to produce a novel, improved platform. Various silicone macromer structures showed significantly improved solubility with TRIS and DMA with components ranging …

Novel Injectable Plga-Peg-Plga Self-Assembled Hydrogels For The Extended And Controlled Release Of Dna Nanocarriers To Prevent Secondary Cataracts, Laura L. Osorno

Theses and Dissertations

Cataracts are the second leading cause of blindness worldwide. There are over 20 million cataract surgeries each year, and these cases are expected to double within the next ten years. Over 40% of adults and nearly all children develop secondary cataracts, or posterior capsule opacification (PCO), following cataract surgery. Currently, Nd:YAG laser therapy is used to treat PCO; however, laser therapy is not available worldwide and treatment may have adverse effects on surrounding ocular tissues. Thus, there is a considerable unmet need for more efficacious and convenient treatments to prevent PCO.

Injectable, stimuli-responsive gels were designed using poly(lactic-co-glycolic acid)-b-poly(ethylene glycol)) …

Active Deep Learning Method To Automate Unbiased Stereology Cell Counting, Saeed Alahmari

USF Tampa Graduate Theses and Dissertations

Cell quantification in histopathology images plays a significant role in understanding and diagnosing diseases such as cancer and Alzheimers. The gold-standard for quantifying cells in tissue sections is the unbiased stereology approach. Unfortunately, in unbiased stereology current practices rely on a well-trained human to manually count hundreds of cells in microscopy images. However, this human-based manual approach is time-consuming, labor-intensive, subject to human errors, recognition bias, fatigue, variable training, poor reproducibility, and inter-observer error. Thus, the lack of high-throughput technology for automating unbiased stereology analyses remains a major obstacle to further progress in a wide range of neuroscience and cancer …

Designing Silk Protein-Based Composite Materials With Tunable Heat Transfer And Magnetic Properties, Ye Xue

Theses and Dissertations

Renewable and biocompatible silk protein materials with desired physical properties show promising applications in biomedical field. In this work, a set of protein-based composites with desired thermal and magnetic properties, enhanced by the appropriate distribution of nanofillers in the protein matrix in both 2D-film and 1D-fiber forms was investigated. Results indicate that secondary structures of silk protein materials regenerated by a formic acid-calcium chloride method are different from those of their respective natural silk fibers. Intramolecular beta-sheet structures were found to dominate these silk films, causing these regenerated samples to be water-insoluble but more flexible than traditional silk films with …

Spatial Heterogeneity Utilization In Ct Images For Lung Nodule Classication, Dmitrii Cherezov

USF Tampa Graduate Theses and Dissertations

Lung cancer (LC) is leading in the number of deaths among the other types of cancer. According to the American Cancer Society, 135,720 deaths during 2020 in the USA will be associated with LC. The patient 5-year survival rate of 16\% was reported in 1986 and 19% in 2019. One of the reasons why survival rate remains low is that the majority of patients diagnosed with cancer had stages III and IV. In contrast, a 5-year survival rate of 70% was reported for patients of stage IA after surgical resection in the National Lung Screening Trial.

CT screening detects a …

Existing Empirical Kinetic Models In Biochemical Methane Potential (Bmp) Testing, Their Selection And Numerical Solution, Yehor Pererva, Charles D. Miller, Ronald C. Sims

Biological Engineering Faculty Publications

Biochemical Methane Potential (BMP) tests are a crucial part of feasibility studies to estimate energy recovery opportunities from organic wastes and wastewater. Despite the large number of publications dedicated to BMP testing and numerous attempts to standardize procedures, there is no “one size fits all” mathematical model to describe biomethane formation kinetic precisely. Importantly, the kinetics models are utilized for treatability estimation and modeling processes for the purpose of scale-up. A numerical computation approach is a widely used method to determine model coefficients, as a replacement for the previously used linearization approach. However, it requires more information for each model …

Reprapable Automated Open Source Bag Valve Mask-Based Ventilator, Aliaksei Petsiuk, Nagendra Gautam Tanikella, Samantha C. Dertinger, Adam Pringle, Shane Oberloier, Joshua M. Pearce

Michigan Tech Publications, Part 1

This study describes the development of an automated bag valve mask (BVM) compression system, which, during acute shortages and supply chain disruptions can serve as a temporary emergency ventilator. The resuscitation system is based on the Arduino controller with a real-time operating system installed on a largely RepRap 3-D printable parametric component-based structure. The cost of the system is under $170, which makes it affordable for replication by makers around the world. The device provides a controlled breathing mode with tidal volumes from 100 to 800 milliliters, breathing rates from 5 to 40 breaths/minute, and inspiratory-to-expiratory ratio from 1:1 to …