Engineering Commons^™

Diffusive Dynamics Of Biological Macromolecules In The Cytoplasm Of Live Bacteria, Asmaa Sadoon

Graduate Theses and Dissertations

Bacteria are small organisms that play important roles in our bodies and in maintaining our surrounding environment. However, bacterial infections are considered as one of the health diseases that threatens the lives of humans. Resistance of bacteria to antibiotics has made treating bacterial infections more challenging. With the emergence of many developed optical techniques, it has become possible to study various biological mechanisms of molecules inside these small organisms with high resolution and precise localization. In this research, single particle tracking photoactivation localization microscopy (sptPALM) technique was used to investigate the dynamics of fluorescent histonelike nucleoid-structuring proteins (H-NS) in live …

Cyanobacterial And Microcystin Response To Nutrient Additions At Lake Fayetteville Throughout The 2021 Growing Season, Lillie Haddock

Graduate Theses and Dissertations

Harmful Algal Blooms (HABs) are becoming a global concern due to their increasing distribution, frequency, intensity, and the occurrence of toxins. While it is known that eutrophication influences algal blooms, there is less known about what triggers these HABs to produce toxins, especially microcystin. In this study, we conducted 21 community bioassays at Lake Fayetteville, a hypereutrophic reservoir in Fayetteville, Arkansas, from April-November 2021 to examine how the addition of phosphorous and nitrogen influence cyanobacteria concentrations, microcystin concentrations, and microcystin toxin production. These experiments included a control, nitrogen (1.0 mg/L as KNO3), low phosphorus (0.025 mg/L as K2HPO4), high phosphorus …

An Engineering And Economic Analysis Of The Implementation Of The Carbo Rock-It, Lydia Huck

Graduate Theses and Dissertations

The patented Carbo Rock-It system was developed to carbonate beverages for the craft brewing industry with the goal of reducing time, cost, and environmental impacts of the carbonation process. This research field tests, models, analyzes and optimizes the engineering and economic performance of a commercial-scale Carbo Rock-It placed in production at an operating brewery (Core Brewing and Distilling Co., Springdale, AR). Field tests indicated that the Carbo Rock-It was able to successfully carbonate twelve 120 BBL batches of Scarlet Letter Seltzer to 3.0 vol/vol while meeting all beverage quality and safety requirements. The Carbo Rock-It was able to reduce carbonation …

Atomic Force Microscopy Based Dna Sensing And Manipulation, Matthew Shubert

Mechanical Engineering Undergraduate Honors Theses

Sequencing DNA provides a positive impact for the biomedical community by understanding a wide variety of applications such as human genetics, disease, and pathogens. The reason the Arkansas Micro & Nano Systems lab is involved with research in DNA sequencing is due to the current, leading industry method. Nanopore sequencing was developed by Oxford Nanopore Technology in which its sequencing method separates double stranded DNA to electrically characterize individual nucleotides traveling through a charged nanopore. Unfortunately, nanopore sequencing uses biological materials that require a shelf life and drives high cost. Therefore, the Arkansas Micro & Nano Systems lab has developed …

Neural Correlates Of Multisensory Integration For Feedback Stabilization Of The Wrist, Aaron J. Suminski, Raymond C. Doudlah, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

Robust control of action relies on the ability to perceive, integrate, and act on information from multiple sensory modalities including vision and proprioception. How does the brain combine sensory information to regulate ongoing mechanical interactions between the body and its physical environment? Some behavioral studies suggest that the rules governing multisensory integration for action may differ from the maximum likelihood estimation rules that appear to govern multisensory integration for many perceptual tasks. We used functional magnetic resonance (MR) imaging techniques, a MR-compatible robot, and a multisensory feedback control task to test that hypothesis by investigating how neural mechanisms involved in …

Training The Responsible Conduct Of Research And Design, Jay R. Goldberg

Biomedical Engineering Faculty Research and Publications

Students Supported by grants from the National Institutes of Health (NIH) are required to complete training in the responsible conduct of research (RCR). This training includes topics such as authorship, handling of data, reporting of results, maintaining confidentiality, and other topics related to the ethical and responsible conduct of research. It prepares students who are supported by NIH research grants for careers involving research.

Comparison Of Cone Mosaic Metrics From Images Acquired With The Spectralis High Magnification Module And Adaptive Optics Scanning Light Ophthalmoscopy, Niamh Wynne, Heather Heitkotter, Erica N. Woertz, Robert F. Cooper, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

Purpose: To compare cone mosaic metrics derived from adaptive optics scanning light ophthalmoscopy (AOSLO) images with those derived from Heidelberg Engineering SPECTRALIS High Magnification Module (HMM) images.

Methods: Participants with contiguous cone mosaics had HMM imaging performed at locations superior and temporal to the fovea. These images were registered and averaged offline and then aligned to split-detection AOSLO images; 200 × 200-µm regions of interest were extracted from both modalities. Cones were semi-automatically identified by two graders to provide estimates of cone density and spacing.

Results: Thirty participants with contiguous cone mosaics were imaged (10 males, 20 females; age range, …

A Preventive Medicine Framework For Wearable Abiotic Glucose Detection System, Saikat Banerjee

Electrical & Computer Engineering Theses & Dissertations

In this work, we present a novel abiotic glucose fuel cell with battery-less remote access. In the presence of a glucose analyte, we characterized the power generation and biosensing capabilities. This system is developed on a flexible substrate in bacterial nanocellulose with gold nanoparticles used as a conductive ink for piezoelectric deposition based printing. The abiotic glucose fuel cell is constructed using colloidal platinum on gold (Au-co-Pt) and a composite of silver oxide nanoparticles and carbon nanotubes as the anodic and cathodic materials. At a concentration of 20 mM glucose, the glucose fuel cell produced a maximum open circuit voltage …

Investigating Arrhythmia Potential In Cardiac Myocytes In Presence Of Long Qt Syndrome, Victoria Lin Lam

Biomedical Engineering Theses & Dissertations

Long QT Syndrome (LQTS) is an increasingly studied condition that leads to potentially fatal heart rhythm disorders, called arrhythmias, and sudden cardiac death. The alterations in the electrocardiograms (ECGs) seen in LQTS patients is caused by mutations to genes related to ion channels in cardiac cells. Computational modeling allows the mechanistic study of these ion channel mutations in LQTS by providing quantitative predictors of cardiac behavior in human and rabbit heart models. This work hypothesizes that the repolarization reserve in cardiac Purkinje cells (PC), that form the cardiac conduction system, is lower than that of ventricular myocytes (VM), resulting in …

5-Axis Milling For Micro-Machining Of Implantable Flow Sensor, Devin Kot-Thompson

Honors Scholar Theses

5 axis milling is a manufacturing process utilizing CNC technology. It has been widely supported as an effective tool for micro machining throughout multiple industries. In medical manufacturing specifically, there is a large demand for high accuracy at the microscale level as the geometries of medical devices are often highly complex. 5-axis milling offers the means to develop such complex features including curved faces and steep walls. This thesis covers the conversion of a generic 3-axis milling machine into a 5-axis machine. Through testing, the modified device effectively demonstrated its ability to run 5-axis tool paths required for complex designs. …

Basketball Shooting Performance Is Maximized By Individual-Specific Optimal Release Strategies, Nathan Slegers

Faculty Publications - Biomedical, Mechanical, and Civil Engineering

This study investigated the relationship between optimal basketball release angles and individual release distributions and whether individuals seek their optimal or minimum velocity release strategy. Sixteen male basketball players (height 183 ± 9 cm, age 22.6 ± 7 years) were recorded shooting 75 three-point shots. Ball release angle and velocity estimates were used in a nonparametric kernel density estimator (KDE) to identify individual-specific release distributions and optimal release angles. Optimal releases varied among individuals and were 4.3 ± 2.1° higher than minimum velocity releases. Mean release angles were 3.9° higher than the minimum velocity angle (p < 0.001) and only 0.4° below the optimal (p = 0.5). …

Evaluating The Use Of Nintendo Labo As A Rehabilitation Tool, Jacob Colwell, Logan Suiter, Amanda Wells

ONU Student Research Colloquium

Serious gaming is the practice of using video games, either commercial or specifically designed, for physical rehabilitation. Serious games have emerged in the last decade as a way to increase patient involvement in rehabilitation, increase the likelihood of patients continuing treatment after progress stalls, and generally increase mental health during treatment. However, the current literature has not kept pace with the evolution of technology and therefore the use of next-generation consoles for serious gaming is underdeveloped.

The Nintendo Switch could provide new avenues for serious gaming because of the advanced sensing ability of its controllers (Joy-Cons) and the engaging ways …

Nanoparticulate Carriers For Drug Delivery, Samantha Lokelani Crossen, Tarun Goswami

Biomedical, Industrial & Human Factors Engineering Faculty Publications

Drug delivery with nanoparticulate carriers is a new and upcoming research area that is making major changes within the pharmaceutical industry. Nanoparticulate carriers are discussed, particularly, engineered nanoparticulate carriers used as drug delivery systems for targeted delivery. Nanoparticulate carriers that are used for drug delivery systems include polymers, micelles, dendrimers, liposomes, ceramics, metals, and various forms of biological materials. The properties of these nanoparticulate carriers are very advantageous for targeted drug delivery and result in efficient drug accumulation at the targeted area of interest, reduced drug toxicity, reduced systemic side effects, and more efficient use of the drug overall. Nanoparticlulate …

Bio-Ionic Liquid Functionalized Hydrogels Towards Smart Tissue Regeneration, Vaishali Krishnadoss

Theses and Dissertations

A blend of scaffolds, biologically active molecules, and cells are required to assemble functional constructs to repair and regenerate damaged tissue or organ via tissue engineering. The scaffold supports cell growth and proliferation and acts as a medium for diverse cellular activities. Even though hydrogel's high-water content and flexible nature make it a pronounced applicant as a scaffold, they exhibit significant technical limitations such as the absence of cell-binding motifs, lack of oxygen, conductivity, adhesive properties, growth of cells in a 3-dimensional (3D) microenvironment. In this thesis, a novel material platform is evaluated and studied to address the concerns mentioned …

Europium-Doped Cerium Oxide Nanoparticles For Microglial Aβ Clearance And Homeostasis, Jatin Machhi, Pravin Yeapuri, Milica Markovic, Milankumar Patel, Wenhui Yan, Yaman Lu, Jacob D. Cohen, Mahmudul Hasan, Mai Mohamed Abdelmoaty, You Zhou, Huangui Xiong, Xinglong Wang, R. Lee Mosley, Howard E. Gendelman, Bhavesh D. Kevadiya

Nebraska Center for Biotechnology: Faculty and Staff Publications

Alzheimer’s disease (AD) is the most common neurodegenerative disorder. Pathologically, it is characterized by the deposition of amyloid beta (Aβ) plaques and presence of neurofibrillary tangles. These drive microglia neuroinflammation and consequent neurodegeneration. While the means to affect Aβ plaque accumulation was achieved how it affects disease outcomes remains uncertain. Cerium oxide (CeO₂) reduces Aβ plaques, oxidative stress, inflammation, and Alzheimer’s disease (AD) signs and symptoms. Specifically, CeO₂ nanoparticles (CeO₂NPs) induces free radical scavenging and cell protective intracellular signaling. This can ameliorate the pathobiology of an AD-affected brain. In order to investigate, CeO₂NPs …

Antiviral Polymers: A Review, Ali Akbari, Ashkan Bigham, Vahid Rahimkhoei, Sina Sharifi, Esmaiel Jabbari

Faculty Publications

Polymers, due to their high molecular weight, tunable architecture, functionality, and buffering effect for endosomal escape, possess unique properties as a carrier or prophylactic agent in preventing pandemic outbreak of new viruses. Polymers are used as a carrier to reduce the minimum required dose, bioavailability, and therapeutic effectiveness of antiviral agents. Polymers are also used as multifunctional nanomaterials to, directly or indirectly, inhibit viral infections. Multifunctional polymers can interact directly with envelope glycoproteins on the viral surface to block fusion and entry of the virus in the host cell. Polymers can indirectly mobilize the immune system by activating macrophages and …

Optimizing The Self-Healing Efficiency Of Hydrogel Encapsulated Bacteria In Concrete, Ricardo Hungria

LSU Master's Theses

Calcium carbonate precipitation through microbial means is a promising pathway for concrete self-healing technologies, mainly for its microcrack sealing attributes. The main goal of this project was to study and optimize the crack healing efficiency of hydrogel encapsulated bacteria in concrete. To achieve this purpose, Bacillus pseudiformus was implemented as the bacteria strain at a concentration of 10⁸ cells/ml. This bacterium strain along with yeast extract was combined along with three different mineral precursors corresponding to magnesium acetate, calcium lactate, and sodium lactate. All these three precursors were evaluated at two concentrations (67.76 mM/l and 75 mM/l). For each …

Fabrication Of Microfluidic Devices To Study Confined Collective Migration Of Breast Cancer Cells, Linh Luong

Symposium of Student Scholars

Cells in our body mostly exist in confined environments. They are surrounded by neighboring cells, tissues, and the extracellular matrix. The changes in these surrounding environments influence cell behaviors. Therefore, studying cell mechanics plays a significant role to understand how cancer cells migrate and what primary factors that control cancer metastasis. Many studies have been developed to study how cancer cells migrate in the body. However, these experiments in vivo are complicated and incredibly challenging. Another approach is to perform experiments in vitro instead. However, to obtain relevant results, a specific experimental apparatus must be designed to confine cells. Glass …

Design And Computational Validation Of A Shear Stress Bioreactor For Conditioning Vascular Tissue To Time-Varying Multidirectional Fluid Shear Stress, Rajeshwari Raja, Philippe Sucosky, Jason Shar

Symposium of Student Scholars

Design and Computational Validation of a Shear Stress Bioreactor for Conditioning Vascular Tissue to Time-Varying Multidirectional Fluid Shear Stress

Author: Rajeshwari Raja Mentor: Dr. Jason A. Shar Department of Mechanical Engineering Kennesaw State University 1100 South Marietta Pkwy SE, 30060

Altered biological environments and conditions, such as microgravity and pregnancy, can impact vascular blood flow and, in turn, generate fluid wall shear stress (WSS; frictional force generated on the tissue surface due to blood flow) abnormalities. These abnormalities are known to affect cardiovascular tissue biology and can be replicated experimentally using a cone-and-plate shear stress bioreactor. This device exposes tissue …

Development Of A Wearable Device For Monitoring And Predicting Human Health In Emergencies, Mukhriddin Arabboev, Shohruh Begmatov, Khabibullo Nosirov, Jean Chamberlain Chedjou, Kyandoghere Kyamakya

Technical science and innovation

In recent years, natural disasters and various similar emergencies have caused many people to leave this world early. The need for the use of modern technologies in emergencies is growing day by day. Various modern devices, techniques and methods are used in post-disaster search and rescue operations. The issue of finding a survivor is very important in post-disaster operations. The vital signs of humans are very important in determining the survival of humans. Heart Rate (HR), Blood Pressure (BP), Respiration rate (breathing rate), and Body Temperature (BT) values are considered four essential vital signs that must be measured regularly. In …

Effects Of Weight-Bearing On Tibiofemoral, Patellofemoral, And Patellar Tendon Kinematics In Older Adults, Vasiliki Kefala, Azhar A. Ali, Landon D. Hamilton, Erin M. Mannen, Kevin B. Shelburne

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Quantification of natural knee kinematics is essential for the assessment of joint function in the diagnosis of pathologies. Combined measurements of tibiofemoral and patellofemoral joint kinematics are necessary because knee pathologies, such as progression of osteoarthritis and patellar instability, are a frequent concern in both articulations. Combined measurement of tibiofemoral and patellofemoral kinematics also enables calculation of important quantities, specifically patellar tendon angle, which partly determines the loading vector at the tibiofemoral joint and patellar tendon moment arm. The goals of this research were to measure the differences in tibiofemoral and patellofemoral kinematics, patellar tendon angle (PTA), and patellar tendon …

Medical Manikin Augmented Reality Simulation (M2ars), Pauline Delacruz, Jacob Gibson, Daniel Howard, Jaclyn Peacock, Kendall Robbins

Modeling, Simulation and Visualization Student Capstone Conference

The Medical Manikin Augmented Reality Simulation (M2ARS) is an augmented reality simulation application built for the Microsoft HoloLens 2 that uses the principles of anatomy transfer to overlay human anatomical structures onto a medical manikin digitally. These structures currently consist of the skeletal, muscular, and circulatory systems. In addition, a model of the lungs and an animated heart are also available within the simulation. M2ARS allows the user to view these structures in a manner that is both visually and spatially accurate to the human body. This application contains two modes; an augmented reality mode, which uses a manikin, and …

A Preliminary Comparative Study Of Molecular Visualization Software For Education, Ruoming Shen

Modeling, Simulation and Visualization Student Capstone Conference

Chemistry and biology are sciences vital for understanding metabolic processes, developing disease treatments, and improving environmental conditions. With extensive knowledge of biochemistry, we can take advantage of a material’s unique chemical composition and properties in various applications. Visualization software is essential for analyzing complex chemical and biological structures and predicting their interactions with each other. This paper presents a preliminary study of three open source molecular visualization software tools - Visual Molecular Dynamics (VMD), Jmol, and Mol*, and evaluates their strengths and deficiencies. This paper utilizes the March Molecule of the Month, Vascular Endothelial Growth Factor (VEGF), from the Protein …

Multi-Modality Breast Mri Segmentation Using Nn-Unet For Preoperative Planning Of Robotic Surgery Navigation, Motaz Alqaoud, John Plemmons Md, Eric Feliberti Md, Facs, Krishnanand Kaipa, Siqin Dong, Gabor Fichtinger, Yimming Xiao, Michel Audette

Modeling, Simulation and Visualization Student Capstone Conference

Segmentation of the chest region and breast tissues is essential for surgery planning and navigation. This paper proposes the foundation for preoperative segmentation based on two cascaded architectures of deep neural networks (DNN) based on the state-of-the-art nnU-Net. Additionally, this study introduces a polyvinyl alcohol cryogel (PVA-C) breast phantom based on the segmentation of the DNN automated approach, enabling the experiments of navigation system for robotic breast surgery. Multi-modality breast MRI datasets of T2W and STIR images were acquired from 10 patients. Segmentation evaluation utilized the Dice Similarity Coefficient (DSC), segmentation accuracy, sensitivity, and specificity. First, a single class labeling …

Senior Subject Gait Analysis Using Self-Supervised Method, Haben Yhdego, Michel Audette

Modeling, Simulation and Visualization Student Capstone Conference

There are many issues regarding the technology used for fall detection gait analysis in the geriatric center of senior patients. The fall detection system used should examine the privacy of the patients and the flexibility of the system. Several researchers have developed fall detection using wearable sensors due to their flexibility and nature of privacy. Most of those developed methods are supervised deep learning methods. However, data annotation is expensive because we use camera video recording and playback of each participant’s recorded video to label the data. Moreover, labelling using a camera recording limits the flexible and private nature of …

Image Processing Algorithms For Detection Of Anomalies In Orthopedic Surgery Implants, Alexander William Wiese

Theses and Dissertations

Orthopedic implant procedures for hip implants are performed on 300,000 patients annually in the United States, with 22.3 million procedures worldwide. While most such operations are successfully performed to relieve pain and restore joint function for the duration of the patient's life, advances in medicine have enabled patients to outlive the life of their implant, increasing the likelihood of implant failure. There is significant advantage to the patient, the surgeon, and the medical community in early detection of implant failures.The research work presented in this thesis demonstrates a non-invasive digital image processing technique for the automated detection of specific arthroplasty …

Fumarate-Based Polymers: Oligo(Poly(Ethylene Glycol) Fumarate) And Poly(Butylene Fumarate) For Tissue Engineering Heart Valve And Bone Tissue, Christian T. Denny

Biomedical Engineering ETDs

Tissue engineering is an emerging field that came from the fields of medicine, materials science, and engineering. The foundation of tissue engineering uses a paradigm that incorporates cells, biomaterials, and exogenous factors to create living tissues for medical, pharmaceutical, and research purposes. Within the last 100 years, biomaterials have been developed to solve many medical and research problems. As biomaterials have developed throughout the years new materials have been developed to have specific properties appropriate for medical applications. Fumarate is a naturally derived molecule in the body and has been found useful for developing polyesters that can be crosslinked into …

Studying Dispersed Phase Holdup In A Pilot Plant Agitated Liquid–Liquid Mixer By Developing Online Expanded Laser Beam Based Technique, Kifah H. Abid, Jihane Mendil, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

Expanded Laser Transmission Technique (E-LTT), where a laser beam is used in conjunction with a beam expander large enough to cover the average drop size up to a few millimeters in the path of the laser in a liquid–liquid dispersion mixture, has been applied for online continuous measurement and investigation in a non-invasive manner of the drop phase volume fraction in an agitated flow mixer of a pilot plant scale. The limitations of beam scattering by the drops through the dispersion path were overcome by having liquids of matching refractive indices enabled by the temperature control system. This study reports …

Nanoparticle Quantification And Distribution On Fluorescently Coated Angioplasty Balloons, Allison Dobson Zieschang

Honors Capstones

No abstract provided.

Structural Health Monitoring Of Bioprinted Materials, Kathryn H. Mcintosh

Honors College Theses

Bioprinting is a new method that utilizes additive manufacturing to construct organs, tissues, and other biostructures. This method presents endless possibilities - less reliance on organ donors (according to the Health Resources and Services Administration, 17 people die each day waiting for an organ transplant in the U.S.), more transplant opportunities, and the ability to save significantly more lives. While bioprinting has opened a new frontier in the biomedical field, there may be some research issues that need to be addressed. For example, numerous researchers have focused on creating novel approaches to print complicated geometries. However, the structural integrity or …