Digital Commons Network^™

Parp2 Promotes Break Induced Replication-Mediated Telomere Fragility In Response To Replication Stress, Daniela Muoio, Natalie Laspata, Rachel L Dannenberg, Caroline Curry, Simone Darkoa-Larbi, Mark Hedglin, Shikhar Uttam, Elise Fouquerel

Department of Biochemistry and Molecular Biology Faculty Papers

PARP2 is a DNA-dependent ADP-ribosyl transferase (ARTs) enzyme with Poly(ADP-ribosyl)ation activity that is triggered by DNA breaks. It plays a role in the Base Excision Repair pathway, where it has overlapping functions with PARP1. However, additional roles for PARP2 have emerged in the response of cells to replication stress. In this study, we demonstrate that PARP2 promotes replication stress-induced telomere fragility and prevents telomere loss following chronic induction of oxidative DNA lesions and BLM helicase depletion. Telomere fragility results from the activity of the break-induced replication pathway (BIR). During this process, PARP2 promotes DNA end resection, strand invasion and BIR-dependent …

Maldi-Msi Identification Of Tissue-Level N-Glycomic And Proteomic Molecular Biomarkers Of Aggressive Prostate Cancer, Jordan Paige Hartig

MUSC Theses and Dissertations

Prostate Cancer (PCa) poses a significant clinical challenge, characterized by debates on screening efficacy and continuous issues with distinguishing aggressive from non-aggressive tumors. Despite treatment advancements, poor patient outcome at late stages and clinical overtreatment of indolent disease emphasizes the urgent need for markers of PCa aggression. Aberrant glycosylation and extracellular matrix (ECM) remodeling are two complex molecular processes necessary for PCa progression, highlighting a novel area for biomarker discovery. Leveraging formalin-fixed paraffin-embedded tissues, tissue microarrays (TMAs), and matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI), distinct N-glycan and ECM profiles are identified. Elevated bisecting, multi-antennary, and fucosylated N-glycans indicate early …

Programs Committee Agenda 4-2-24, Angela Brock

Programs Committee (PC)

No abstract provided.

Program Review Report 4-2-24, Angela Brock

Program Review Committee

No abstract provided.

Investigating The Molecular Function Of Mutated Arabidopsis As2 Gene, Tara Phelps-Durr, Cadee A. Haugsness

SACAD: Scholarly Activities

This study aims to more deeply understand the role of the ASYMMETRIC LEAVES 2 (AS2) gene in Arabidopsis. During leaf development, the AS2 protein keeps the KNOX genes turned off so that leaves can develop. We use CRISPR technology to create mutations in specific regions of AS2. These mutations are predicted to change the protein structure of AS2, which may result in a mutated leaf. The analysis of the mutation allows us to better understand how AS2 keeps the KNOX genes off.

Analisis Spasial Faktor Risiko Difteri Di Provinsi Lampung Tahun 2022 Dan 2023, Nada Izzata Kamilla, Feranita Utama, Noviani Noviani

Jurnal Biostatistik, Kependudukan, dan Informatika Kesehatan

Difteri merupakan penyakit menular yang disebabkan oleh bakteri Corynebacterium diphtheriae. Bila ditemukan satu kasus difteri di suatu wilayah maka dapat ditetapkan sebagai KLB. Provinsi Lampung terus mengalami kenaikan kasus dan suspek difteri sejak 2020 dan turut menyumbang angka kematian akibat difteri pada tahun 2023. Kasus difteri dipengaruhi oleh beberapa faktor risiko. Penelitian ini bertujuan untuk mendapatkan gambaran distribusi dan faktor risiko kasus difteri di Provinsi Lampung dengan memetakan kabupaten/kota berdasarkan persebaran dan faktor risikonya. Penelitian ini menggunakan desain studi ekologi dengan metode deskriptif analitik dengan aplikasi Quantum GIS versi 3.28.3. Hasil menunjukan distribusi kejadian difteri di Provinsi …

Impact Of Fads Genotype On Polyunsaturated Fatty Acid Content In Human Milk Extracellular Vesicles: A Genetic Association Study, John J. Miklavcic, Natalie Paterson, Jennifer Hahn-Holbrook, Laura M. Glynn

Food Science Faculty Articles and Research

Background

Extracellular vesicles in human milk are critical in supporting newborn growth and development. Bioavailability of dietary extracellular vesicles may depend on the composition of membrane lipids. Single-nucleotide polymorphisms (SNPs) in the fatty acid desaturase gene cluster impact the content of long-chain polyunsaturated fatty acids in human milk phospholipids. This study investigated the relation between variation in FADS1 and FADS2 with the content of polyunsaturated fatty acids in extracellular vesicles from human milk.

Methods

Milk was obtained from a cohort of mothers (N = 70) at 2–4 weeks of lactation. SNPs in the FADS gene locus were determined using …

Ai Is A Viable Alternative To High Throughput Screening: A 318-Target Study, Izhar Wallach, Denzil Bernard, Kong Nguyen, Gregory Ho, Adrian Morrison, Adrian Stecula, Andreana Rosnik, Ann Marie O’Sullivan, Aram Davtyan, Ben Samudio, Bill Thomas, Brad Worley, Brittany Butler, Christian Laggner, Desiree Thayer, Ehsan Moharreri, Greg Friedland, Ha Truong, Henry Van Den Bedem, Ho Leung Ng, Kate Stafford, Krishna Sarangapani, Kyle Giesler, Lien Ngo, Michael Mysinger, Mostafa Ahmed, Nicholas J. Anthis, Niel Henriksen, Arthur L. Haas, Et Al

School of Medicine Faculty Publications

High throughput screening (HTS) is routinely used to identify bioactive small molecules. This requires physical compounds, which limits coverage of accessible chemical space. Computational approaches combined with vast on-demand chemical libraries can access far greater chemical space, provided that the predictive accuracy is sufficient to identify useful molecules. Through the largest and most diverse virtual HTS campaign reported to date, comprising 318 individual projects, we demonstrate that our AtomNet® convolutional neural network successfully finds novel hits across every major therapeutic area and protein class. We address historical limitations of computational screening by demonstrating success for target proteins without known binders, …

Bayesian Approach Of Clustering One-Dimensional Data And Identifying Pattern Of Two-Dimensional Data Via Standardized Statistics, Luhang Han

Electronic Theses and Dissertations Archive

High dimensional data is widely studied in many areas, such as in epigenetic study and biological science. However, there is challenging to develop and apply clustering methods to high dimensional data. In this dissertation, we propose two clustering methods to study DNA methylation (DNAm) data in one-dimensional and stochastic optical reconstruction microscopy (STORM) image data in two-dimensional. DNAm changes are known to be associated with different age stages, and the mapped genes could be linked to incidence of diseases. Thus, learning the features of DNAm at different CpG sites will benefit subsequent epigenetic epidemiological studies on marker detections for health …

Genetic Ancestry And Radical Prostatectomy Findings In Hispanic/Latino Patients, Natalia L. Acosta-Vega, Rodolfo Varela, Jorge Andrés Mesa, Jone Garai, Alberto Gómez-Gutiérrez, Silvia J. Serrano-Gómez, Jovanny Zabaleta, María Carolina Sanabria-Salas, Alba L. Combita

School of Medicine Faculty Publications

Background: African ancestry is a known factor associated with the presentation and aggressiveness of prostate cancer (PC). Hispanic/Latino populations exhibit varying degrees of genetic admixture across Latin American countries, leading to diverse levels of African ancestry. However, it remains unclear whether genetic ancestry plays a role in the aggressiveness of PC in Hispanic/Latino patients. We explored the associations between genetic ancestry and the clinicopathological data in Hispanic/Latino PC patients from Colombia. Patients and methods: We estimated the European, Indigenous and African genetic ancestry, of 230 Colombian patients with localized/regionally advanced PC through a validated panel for genotypification of 106 Ancestry …

Implementing A Solar Photovoltaic Station In Watering Systems Utilizing Complex Software, Akbarxon Sarvar O'G'Li Uroqov, Faxriddin Jaylovovich Nosirov, G'Olibjon Pardayevich Arzikulov, Zarina Amriddin Qizi Sayfutdinova

Technical science and innovation

This article explores the benefits of transitioning from traditional agricultural irrigation systems to more cost-effective alternatives powered by renewable energy sources. By integrating solar photovoltaic technology into irrigation processes, significant reductions in resource wastage, estimated at 45-50%, are achievable through the implementation of drip irrigation techniques. This results in enhanced agricultural productivity. Moreover, the utilization of solar panels in green zones mitigates surface temperature increases, contributing to a 2-5% boost in electricity production. Currently, irrigation facilities primarily rely on the main energy grid. However, transitioning to renewable energy sources decreases reliance on non-renewable fuels, reduces greenhouse gas emissions, and fosters …

Globular Protein For Surface Modification Of Cellulosecontaining Materials, Nodira Saydaliyeva

Technical science and innovation

The purpose of this work is the chemical modification of cotton fabrics with natural globular protein. Modification was carried out in the process of finishing cotton fabrics, after decoction and bleaching in a continuous mode. The effect of modification on the strength, protein content and functional groups of cotton fabric has been studied. According to the results obtained using the AUTOGRAPH AGS-N machine, it was found that the modification of cotton fabrics with a solution of globular protein increases the strength of the treated fabrics, depending on the concentration of the modifier and the temperature regime. Treatment with a highly …

Secrets, Soviets, And Sverdlovsk: Critiques Of The Biological Weapons Convention And Biosecurity In The 1970s And 1980s, Morgan Kelley

Departmental Honors & Graduate Capstone Projects

The Biological Weapons Convention, initially ratified in 1975, banned the production and stockpiling of biological weapons; however, it has faced considerable modern criticism for being unenforceable and not strong enough to ensure states' compliance. These modern critiques are based on the knowledge that the Soviet Union was in violation of the Convention, which was not confirmed until 1989. By analyzing the reactions to the Biological Weapons Convention by scholars and scientists, American intelligence officials, and American news media, it becomes clear that concerns about the Convention did exist prior to 1989, even when for many it was not certain that …

Approved Programs 4-2-24, Angela Brock

Programs Committee (PC)

No abstract provided.

Dying Of Natural Silk Deglued By Various Methods, Venera Djavdatovna Khamidova

Technical science and innovation

Products made of natural silk are indispensable for their hygienic properties and will always be in great demand. To obtain an even and intense coloration on a textile material, it is necessary to ensure its effective preparation with the most complete removal of hydrophobic contaminants (both natural and silicone oils applied during the weaving process, lubricants, etc.), which hinder the dyeing of the substrate and reduce the color characteristics of the obtained colors. Therefore, the issue of preparing natural silk for dyeing is relevant. In view of the sensitivity of the main fiber-forming component of natural silk - fibroin to …

Patient Perspectives On The Use Of Artificial Intelligence In Health Care: A Scoping Review, Sally Moy, Mona Irannejad, Stephanie Jeanneret Manning, Mehrdad Farahani, Yomna Ahmed, Ellis Gao, Radhika Prabhune, Suzan Lorenz, Raza Mirza, Christopher Klinger

Journal of Patient-Centered Research and Reviews

Purpose

Artificial intelligence (AI) technology is being rapidly adopted into many different branches of medicine. Although research has started to highlight the impact of AI on health care, the focus on patient perspectives of AI is scarce. This scoping review aimed to explore the literature on adult patients’ perspectives on the use of an array of AI technologies in the health care setting for design and deployment.

Methods

This scoping review followed Arksey and O'Malley’s framework and Preferred Reporting Items for Systematic Reviews and Meta-Analysis for Scoping Reviews (PRISMA-ScR). To evaluate patient perspectives, we conducted a comprehensive literature search using …

Executive Committee - Minutes, 4/2/2024, Academic Senate

Academic Senate Minutes

No abstract provided.

Executive Committee - Agenda 4/2/2024, Academic Senate

Academic Senate Agendas

No abstract provided.

Ucc Minutes 4-2-24, Angela Brock

UCC Agendas/Minutes

No abstract provided.

Conceptual Competence In Psychiatric Training: Building A Culture Of Conceptual Inquiry, Awais Aftab

Faculty Scholarship

Building a culture of conceptual inquiry in psychiatric training requires the development of conceptual competence: the ability to identify and examine assumptions that constitute the philosophical foundations of clinical care and scientific investigation in psychiatry. In this article, we argue for the importance of such competence and illustrate approaches to instilling it through examples drawn from our collective experiences as psychiatric educators.

Dialogue Journals In Assessment Of Student Writing, Brigid Elise Ovitt

Special Education ETDs

Because writing is complex and draws upon so many psychological and cognitive processes, learning to write is even more challenging for students with disabilities than it is for typically developing students. Nonetheless, writing research in the field of education and special education lags behind that of many other academic subjects. The body of research that does exist, indicates that affective factors (attitude toward writing, evaluation of self as writer, enjoyment of writing) impacts students’ writing achievement. This paper proposes a multiple baseline across settings study to determine whether including a response journal element as part of classroom writing assessment writing …

Chiral Recognition Of Chiral (Hetero)Cyclic Derivatives Probed By Tetraaza Macrocyclic Chiral Solvating Agents Via ¹H Nmr Spectroscopy, Yu Wang, Hongmei Zhao, Chunxia Yang, Lixia Fang, Li Zheng, Hehua Lv, Pericles Stavropoulos, Lin Ai, Jiaxin Zhang

Chemistry Faculty Research & Creative Works

In the Field of Chiral Recognition, Chiral Cyclic Organic Compounds, Especially Heterocyclic Organic Compounds, Have Attracted Little Attention and Have Been Rarely Studied as Chiral Substrates by Means of 1H NMR Spectroscopy. in This Paper, Enantiomers of Thiohydantoin Derivatives, Representing Typical Five-Membered N,N-Heterocycles, Have Been Synthesized and Utilized for Assignment of Absolute Configuration and Analysis of Enantiomeric Excess. All Enantiomers Have Been Successfully Differentiated with the Assistance of Novel Tetraaza Macrocyclic Chiral Solvating Agents (TAMCSAs) by 1H NMR Spectroscopy. Surprisingly, Unprecedented Nonequivalent Chemical Shift Values (Up to 2.052 Ppm) of the NH Proton of Substrates Have Been Observed, a New …

Adult Development And Associated Health Risks, Elizabeth C. Halloran

Journal of Patient-Centered Research and Reviews

Much has been learned about adult development in recent decades. Adults go through stages of development (emerging adulthood, young adulthood, middle adulthood, post-retirement, and very old age) with certain challenges at each stage. Viewing patients through a developmental lens is part of providing patient-centered care. Knowing the prominent issues, stressors, and risks at each stage of development is important in understanding patients. This knowledge can help customize medical advice to patients regarding obesity, disability, sleep, substance use, relationships, and age-related declines. This paper summarizes an updated view of adult development and discusses its relevance to health risks and patient-centered care …

Identification Of Colorectal Cancer Cell Stemness From Single-Cell Rna Sequencing, Kangyu Lin, Saikat Chowdhury, Mohammad A Zeineddine, Fadl A Zeineddine, Nicholas J Hornstein, Oscar E Villarreal, Dipen M Maru, Cara L Haymaker, Jean-Nicolas Vauthey, George J Chang, Elena Bogatenkova, David Menter, Scott Kopetz, John Paul Shen

Faculty, Staff and Student Publications

UNLABELLED: Cancer stem cells (CSC) play a critical role in metastasis, relapse, and therapy resistance in colorectal cancer. While characterization of the normal lineage of cell development in the intestine has led to the identification of many genes involved in the induction and maintenance of pluripotency, recent studies suggest significant heterogeneity in CSC populations. Moreover, while many canonical colorectal cancer CSC marker genes have been identified, the ability to use these classical markers to annotate stemness at the single-cell level is limited. In this study, we performed single-cell RNA sequencing on a cohort of 6 primary colon, 9 liver metastatic …

Neutrophil Elastase Remodels Mammary Tumors To Facilitate Lung Metastasis, Amriti R Lulla, Said Akli, Cansu Karakas, Joseph A Caruso, Lucas D Warma, Natalie W Fowlkes, Xiayu Rao, Jing Wang, Kelly K Hunt, Stephanie S Watowich, Khandan Keyomarsi

Faculty, Staff and Student Publications

Metastatic disease remains the leading cause of death due to cancer, yet the mechanism(s) of metastasis and its timely detection remain to be elucidated. Neutrophil elastase (NE), a serine protease secreted by neutrophils, is a crucial mediator of chronic inflammation and tumor progression. In this study, we used the PyMT model (NE+/+ and NE-/-) of breast cancer to interrogate the tumor-intrinsic and -extrinsic mechanisms by which NE can promote metastasis. Our results showed that genetic ablation of NE significantly reduced lung metastasis and improved metastasis-free survival. RNA-sequencing analysis of primary tumors indicated differential regulation of tumor-intrinsic actin cytoskeleton signaling pathways …

Advancing Single-Cell Proteomics Through Innovations In Liquid Chromatography And Mass Spectrometry, Kei Grant Isaac Webber

Theses and Dissertations

Traditional proteomics studies can measure many protein biomarkers simultaneously from a single patient-derived sample, promising the possibility of syndromic diagnoses of multiple diseases sharing common symptoms. However, precious cellular-level information is lost in conventional bulk-scale studies that measure tissues comprising many types of cells. As single cells are the building blocks of organisms and are easier to biopsy than traditional bulk samples, performing proteomics on a single-cell level would benefit clinicians and patients. Single-cell proteomics, combined with mass spectrometry imaging, can be used to analyze cells in their microenvironment, preserving spatial information. We have previously used laser-capture microdissection to isolate …

Broken Promises: Prolonged Diminished Quality-Of-Life Among Liberian Ebola Survivors Half A Decade After The 2014-16 West African Outbreak, Jessi Hanson-Defusco, Decontee Davis, Meghana Bommareddy, Zainab Olaniyan

Journal of Social, Behavioral, and Health Sciences

The 2014–2016 Ebola outbreak left thousands of Liberian survivors with severely diminished quality of life. Applying a social determinants framework, this mixed method study investigates to what extent Ebola virus disease (EVD) survivors suffer long-haul psychosocial stress, diminished quality-of-life factors, and the impact of EVD-related service provisions on their ongoing healing. We present the results of a quantitative analysis survey of data collected from 19 Liberian EVD survivors in 2022 using snowball sampling. Additionally, a qualitative analysis of survivor statements helps triangulate key statistical findings and inform causal mechanisms. Survivors report experiencing 5.25 of a total of 7 ongoing stressors …

Reliability Of Using Secondary And Tertiary Treated Wastewater In Concrete Mixing And Curing, Amany G. Micheal Prof., Haidy Abd El Salam

Architectural Engineering

Water scarcity is a problem that faces many regions. In a developing and arid countries, the need for fresh water is exponentially increasing. One of the most water consuming industries is the construction industry, especially in concrete manufacturing. This research is an evaluation of the Reliability of recycled wastewater to be used in concrete manufacturing. Two different wastewater treatment regimens are implemented: secondary and tertiary treated wastewater. The treated wastewater, either secondary or tertiary, replaces potable water with percentages of 25%, 50%, and 100%. The mixture of the two types of water is used in concrete mixing and curing. Control …

We Need A Solid Scientific Basis For Nature-Based Climate Solutions In The United States, Kimberly A. Novick, Trevor F. Keenan, William R L Anderegg, Caroline P. Normile, Benjamin R K Runkle, Emily E. Oldfield, Gyami Shrestha, Margaret E K Evans, Dennis D. Baldocchi, James T. Randerson, Jonathan Sanderman, Margaret S. Torn, Anna T. Trugman, Christopher A. Williams

Geography

Opinion piece mapping the many challenges and variables around nature-based climate solutions (NbCS) in the United States, and the need to pinpoint large-scale strategies that will lead to significant, durable, and measurable net climate cooling. They must do so without simply displacing emissions to other locations.

The Fibromyalgia Pain Experience: A Scoping Review Of The Preclinical Evidence For Replication And Treatment Of The Affective And Cognitive Pain Dimensions, Cassie M. Argenbright, Alysia M. Bertlesman, Izabella M. Russell, Tracy L. Greer, Yuan B. Peng, Perry N. Fuchs

Psychological Science Faculty Publications

Fibromyalgia is a chronic, widespread pain disorder that is strongly represented across the affective and cognitive dimensions of pain, given that the underlying pathophysiology of the disorder is yet to be identified. These affective and cognitive deficits are crucial to understanding and treating the fibromyalgia pain experience as a whole but replicating this multidimensionality on a preclinical level is challenging. To understand the underlying mechanisms, animal models are used. In this scoping review, we evaluate the current primary animal models of fibromyalgia regarding their translational relevance within the affective and cognitive pain realms, as well as summarize treatments that have …