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2023

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Timber Island: A Screenplay, Lucas Cunningham Jan 2023

Timber Island: A Screenplay, Lucas Cunningham

Pomona Senior Theses

A screenplay about the legacy of land use in the Pacific Northwest:

A family from old timber money looking to sell their expansive Pacific Northwest island estate. Two Parks Service surveyors, a Native American scientist, and a developer competing for the bid. A forest with its own agenda.

Against a backdrop of cedar trees and saltwater, tensions boil, ideologies clash, and buried secrets bubble to the surface.

Who will walk away with the deed to Timber Island? And what will it cost?


Hope Is A Discipline: Feminism, Dichotomy, And The Ethics Of Transformative Justice, Mariama Sidime Jan 2023

Hope Is A Discipline: Feminism, Dichotomy, And The Ethics Of Transformative Justice, Mariama Sidime

Pomona Senior Theses

Senior thesis submitted in partial fulfillment of the Bachelor's of Arts in English


Tools For Collective Thought: Augmenting Collaborative Sensemaking, Jacob Zimmerman Jan 2023

Tools For Collective Thought: Augmenting Collaborative Sensemaking, Jacob Zimmerman

Pomona Senior Theses

As some pioneers of personal computing argue, we have yet to reach the potential that computing offers to enhance our cognition. Some modern scholars of tools for thought give a prerogative to develop transformative tools for thought (Matuschak & Nielsen, 2019), recognizing that the tools we may use enable new thought patterns and thus new cognitive abilities. As cognition is mediated both by our tools and by the minds of others, I evaluate the current state of literature on tools built to support collaborative sensemaking, a domain of collective cognition characterized by various interdependent cognitive processes. To apply and test …


Seventy Years Of Commitment To Dental Progress, Loma Linda University School Of Dentistry Jan 2023

Seventy Years Of Commitment To Dental Progress, Loma Linda University School Of Dentistry

Articulator (Dentistry)

Seventy years of dental progress at Loma Linda University, School of Dentistry, 1953-2023.

3 | Dedication to Dr. Melvin Lund
4 | Introduction
6 | Reducing Pain and Anxiety
9 | What is Dental Caries?
10 | Restoring Teeth - Innovative Methods & Materials
12 | Replacing Missing Teeth - Dental Implants
14 | Periodontics - The Loma Linda Group
15 | Orthodontics - Innovative Use of Computer Tomography
16 | Biocentric Cements - A Major Endodontic Innovation
17 | Advances in Oral & Maxillofacial Surgery
17 | The Role of Pediatric Dentistry in Orofacial Clefts
18 | Progress in …


“Should Wellbeing Be The Same As Perfection?” A Case Study On Student Wellbeing In Higher Mathematics Education, Marcelo Alonso Almora Rios Jan 2023

“Should Wellbeing Be The Same As Perfection?” A Case Study On Student Wellbeing In Higher Mathematics Education, Marcelo Alonso Almora Rios

Graduate Student Theses, Dissertations, & Professional Papers

Previous research has given the impression that reticent is our hunt for optimal teaching practices, educational goals, and nature of mathematical workings. In this regard, we have (seemingly) ended up with the following inquiries:

  • What could the math classroom be for? and
  • What has the math classroom been for?

These two questions touch on the scary horns of two other charged philosophical dandruffs. Namely:“What are the aims of teaching mathematics?” and “What should be our objectives in learning it?”

The term ‘positive education’ refers to an educational system engendering both the skills of positive wellbeing and traditional, academic achievement (Seligman …


Reterritorialization And Enclavic Tourism Development: A History Of Zoning And Its Impacts In Corbett Tiger Reserve Landscape, India, Rajiv Bhartari Jan 2023

Reterritorialization And Enclavic Tourism Development: A History Of Zoning And Its Impacts In Corbett Tiger Reserve Landscape, India, Rajiv Bhartari

Graduate Student Theses, Dissertations, & Professional Papers

Zoning has become the sine qua non in protected area management around the world. Yet zoning as an assemblage of policies, practices and especially politics is not well understood, especially through a critical geographical/political ecology lens. In this research, I used the concepts of territorialization, reterritorialization and enclavization as a framework for examining the creation and impacts of zoning in the Corbett Tiger Reserve (CTR) landscape over past five decades (1973-2023). The Corbett Tiger Reserve landscape has the largest wild tiger (Panthera tigris tigris) population in any protected area in the world. The framework helped to understand successive …


The Analysis Of Ancient Dna: From Mitochondria To Pathogens, Tre Joseph Marcus Blohm Jan 2023

The Analysis Of Ancient Dna: From Mitochondria To Pathogens, Tre Joseph Marcus Blohm

Graduate Student Theses, Dissertations, & Professional Papers

Ancient DNA (aDNA) is arguably one of the most difficult science fields to work in due to the constant battle against contamination and degradation; however, it is also one of the most rewarding. aDNA researchers have consistently garnered interest the world over with their findings and sparking the curiosity of many who wish to know more about who we are as Homo sapiens. Mitochondrial DNA (mtDNA) and pathogen DNA were used in this dissertation to understand more about where populations came from, how they moved, and what their environment was like through the identification of their maternally inherited mtDNA and …


Old Invisible Presence: Nonhuman Intelligence And Artificial Nature In A Coast Of Trees By A. R. Ammons And S*Perm**K*T By Harryette Mullen, Miles Jochem Jan 2023

Old Invisible Presence: Nonhuman Intelligence And Artificial Nature In A Coast Of Trees By A. R. Ammons And S*Perm**K*T By Harryette Mullen, Miles Jochem

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.


A Multidisciplinary Approach To The Management Of A Non-Native Trout Species, Kaeli Alexis Davenport Jan 2023

A Multidisciplinary Approach To The Management Of A Non-Native Trout Species, Kaeli Alexis Davenport

Graduate Student Theses, Dissertations, & Professional Papers

Non-native freshwater fish are considered a significant threat to the survival of native freshwater fish populations. Traditional management strategies for dealing with non-native fish such as chemical or mechanical removal have limitations and can be unsuccessful. A novel method for the removal of non-native fish is a technique where the addition of non-native male fish with a YY genotype (MYY) theoretically results in a shift of the population sex ratio towards all or mostly all males, driving population extirpation. However, many aspects that affect the success of this method have not been thoroughly tested. My doctoral research incorporated multiple disciplines …


Impacts Of Eating Disorder Recovery On Communication Of Identity Through Food, Rosemary Willett Jeter Jan 2023

Impacts Of Eating Disorder Recovery On Communication Of Identity Through Food, Rosemary Willett Jeter

Graduate Student Theses, Dissertations, & Professional Papers

Using the Communication Theory of Identity as a framework, the purpose of this thesis was to investigate how the experience of eating disorder recovery (EDR) impacts one’s communication of identity through and about food, and perceptions of others’ communication about and through food. Purposive sampling yielded 20 adult participants who self-identified as having been in EDR for at least one year. Results from a phronetic iterative data analysis of semi-structured interviews yielded several themes. When considering how EDR influences personal communication through food, main themes include: (a) the inability to share meals creates a gap between the enacted and relational …


Evaluating The Use Of Environmental Tracers To Reduce Conceptual Model Uncertainty Of Hydrogeologic Models, Andrew Nordberg, Jon Graham, W. Payton Gardner Jan 2023

Evaluating The Use Of Environmental Tracers To Reduce Conceptual Model Uncertainty Of Hydrogeologic Models, Andrew Nordberg, Jon Graham, W. Payton Gardner

Graduate Student Theses, Dissertations, & Professional Papers

Environmental tracer concentrations for CFC12, SF6, and tritium are used in groundwater simulations to assess the ability of these tracers to reduce conceptual model uncertainty due to uncertainty of a site’s geologic and recharge characterization. The resulting groundwater simulations are characterized by site-specific hydrologic and geologic data, and with coordination from a field team with years of knowledge about the site. First-order (conceptual) uncertainty is directly addressed by using a stochastic modeling approach for spatial variability of the proposed subsurface configurations. Simulations of environmental tracer concentrations and water levels are used to assess six alternate conceptual models that are based …


Meta-Analysis Of Scent Detection Canines And Potential Factors Influencing Their Success Rates, Molly Marie Jaskinia Jan 2023

Meta-Analysis Of Scent Detection Canines And Potential Factors Influencing Their Success Rates, Molly Marie Jaskinia

Graduate Student Theses, Dissertations, & Professional Papers

Objective: This is a meta-analysis focused on the success rates of scent detection canines and potential factors that could influence their accuracy. A series of statistical analyses were conducted to determine if certain demographic factors, such as the dog’s gender, age, and breed, have an effect on a scent dog’s accuracy during a search. Or if more circumstantial factors, like the dog’s level of experience in scent work, the type of target scent, and their handler’s awareness of the target’s location, affect the outcome of the search.

Materials and Methods: A dataset was created from 37 different articles consisting of …


An Examination Of The Food System, Foodscape, Dietary Patterns, And Accolated Health Outcomes Of Salish People Within The Confederated Salish And Kootenai Nation, Joshua William Brown Jan 2023

An Examination Of The Food System, Foodscape, Dietary Patterns, And Accolated Health Outcomes Of Salish People Within The Confederated Salish And Kootenai Nation, Joshua William Brown

Graduate Student Theses, Dissertations, & Professional Papers

Often an individualistic, consumerist strategy is promoted as the solution to decrease the growing prevalence of diet-related diseases. Unfortunately, this logic is ahistorical and apolitical while privileging pathological individualism, capitalistic consumerism, and prevalent diets within the United States. This reasoning fails to recognize diet construction across time by ideologies, policies, and practices. Such an outlook misses the reality that many people cannot escape the grip of the modern, pervasive, ultra-processed food system.

Several Native American populations find themselves plagued with high rates of diet-related diseases. Standard mantra shoulders these communities with their plight, often framing the discourse as personal responsibility …


Synthesis And Characterization Of Novel Biomaterials: The Use Of Hyaluronan For Otologic Applications And Silk Fibroin For Sensing Applications, Elizabeth Marie Arrigali Jan 2023

Synthesis And Characterization Of Novel Biomaterials: The Use Of Hyaluronan For Otologic Applications And Silk Fibroin For Sensing Applications, Elizabeth Marie Arrigali

Graduate Student Theses, Dissertations, & Professional Papers

We have developed four projects using biomaterials including hyaluronan (HA) and silk fibroin (SF) for biomedical applications. First, we investigated an HA-antioxidant conjugate for topical application in sensorineural hearing loss (SNHL). Drug delivery to the ear is very difficult. Systemic approaches usually result in low concentration to the ear and topical approaches are difficult with the two anatomical membranes of the ear: the tympanic membrane (TM) and the round window membrane (RWM). We have chosen an HA-based drug conjugate as HA has been shown to permeate through anatomical membranes like the skin. Our hypothesis was that an antioxidant like DMethionine …


Regulation Of Innate Immune Responses To Rift Valley Fever Virus Infection Through Alternative Splicing Of Riok3, Thomas Charles Bisom Jan 2023

Regulation Of Innate Immune Responses To Rift Valley Fever Virus Infection Through Alternative Splicing Of Riok3, Thomas Charles Bisom

Graduate Student Theses, Dissertations, & Professional Papers

Work in this dissertation focuses on how innate immune responses are activated, dysregulated, evaded, and co-opted during Rift Valley fever virus (RVFV) infection. To better understand how innate immune responses are affected during RVFV infection, we placed a particular emphasis on understanding the functions of the atypical kinase RIOK3 in innate immune responses. RIOK3 was previously shown by our group and other groups to be involved in the antiviral type 1 interferon (IFN) and the inflammatory NFκB innate immune responses, but its exact functions in these responses were not clear. Prior research in our group also showed that RIOK3 mRNA …


Traditional Ecological Philosophy, Michael J. Desrosier Jan 2023

Traditional Ecological Philosophy, Michael J. Desrosier

Graduate Student Theses, Dissertations, & Professional Papers

A collection of creative essays that span a range of topics centered on Indigenous environmental wisdom.


Magnetic Bistability For A Wider Bandwidth In Vibro-Impact Triboelectric Energy Harvesters, Qais Qaseem, Alwathiqbellah Ibrahim Jan 2023

Magnetic Bistability For A Wider Bandwidth In Vibro-Impact Triboelectric Energy Harvesters, Qais Qaseem, Alwathiqbellah Ibrahim

Mechanical Engineering Faculty Publications and Presentations

Mechanical energy from vibrations is widespread in the ambient environment. It may be harvested efficiently using triboelectric generators. Nevertheless, a harvester’s effectiveness is restricted because of the limited bandwidth. To this end, this paper presents a comprehensive theoretical and experimental investigation of a variable frequency energy harvester, which integrates a vibro-impact triboelectric-based harvester and magnetic nonlinearity to increase the operation bandwidth and improve the efficiency of conventional triboelectric harvesters. A cantilever beam with a tip magnet was aligned with another fixed magnet at the same polarity to induce a nonlinear magnetic repulsive force. A triboelectric harvester was integrated into the …


Convolution Neural Networks For Phishing Detection, Arun D. Kulkarni Jan 2023

Convolution Neural Networks For Phishing Detection, Arun D. Kulkarni

Computer Science Faculty Publications and Presentations

Phishing is one of the significant threats in cyber security. Phishing is a form of social engineering that uses e-mails with malicious websites to solicitate personal information. Phishing e-mails are growing in alarming number. In this paper we propose a novel machine learning approach to classify phishing websites using Convolution Neural Networks (CNNs) that use URL based features. CNNs consist of a stack of convolution, pooling layers, and a fully connected layer. CNNs accept images as input and perform feature extraction and classification. Many CNN models are available today. To avoid vanishing gradient problem, recent CNNs use entropy loss function …


Should Pharma Companies Waive Their Covid-19 Vaccine Patents? A Legal And Ethical Appraisal, Tammy W. Cowart, Gregory L. Bock Jan 2023

Should Pharma Companies Waive Their Covid-19 Vaccine Patents? A Legal And Ethical Appraisal, Tammy W. Cowart, Gregory L. Bock

Accounting, Finance, Information Systems, and Business-Law Faculty Publications and Presentations

Pharmaceutical companies, like many other types of companies, are incentivized to create, manufacture, and distribute new products, in part due to the legal protections of patent law. However, the tension between patent rights and the public good has been heightened as pharma companies developed new vaccines to combat the COVID-19 pandemic. Wealthy governments paid well for vaccines and received ample supplies, while low- and middle-income countries struggled to obtain access to any vaccines. Some countries called for pharmaceutical companies to waive their patent protections for vaccines in order to facilitate the worldwide manufacture and distribution of COVID-19 vaccines. This paper …


Ruslan And Lolita: Nabokov's Pursuit Of Pushkin's Monsters, Maidens, And Morals, Ludmila Lavine Jan 2023

Ruslan And Lolita: Nabokov's Pursuit Of Pushkin's Monsters, Maidens, And Morals, Ludmila Lavine

Faculty Journal Articles

This article discusses the Russian precursor to Humbert’s explicit “kingdom by the sea”: Pushkin’s mock-epic Ruslan and Liudmila (RL). An amalgam of Slavic and Western folklore that scandalized the reading public in its day, Pushkin’s work underpins Nabokov’s own transnational position as a writer whose splash onto the Anglophone scene was accompanied by similar outcries of smut and pornography. In addition to a multitude of fairy-tale sources already documented in the scholarship, Lolita’s cluster of mermaids, sleeping beauties, dark magic, invisibility, pursuit and captivity, physical topography, and “brothers”-rivals finds in Pushkin’s RL a synthesizing subtext. Moreover, Pushkin’s play …


What Kills The Virtually Immortal Palms Of The Florida Scrub?, Warren G. Abrahamson Ii Jan 2023

What Kills The Virtually Immortal Palms Of The Florida Scrub?, Warren G. Abrahamson Ii

Faculty Journal Articles

Premise: Life span varies greatly across plants, with some species being capable of extreme longevity. Yet even long‐lived individuals are susceptible to climatic events, fire, and other challenges. We examined rare mortality events and their causes in two long‐lived palmettos over four decades. Methods: We monitored the survival of the clonal Serenoa repens and non‐clonal, Florida‐endemic Sabal etonia from 1981 to 2022 in four habitats along an elevational gradient within the globally imperiled Florida scrub ecosystem. We considered several challenges to palmetto survival, including extreme fires, shading due to lack of fire, droughts, periods of high precipitation, and possible pathogens. …


Vinyl Chloride Accident Unleashes A Toxic Legacy, Chengjun Li, Peng Gao, Riqing Yu, Huan Zhong, Mengjie Wu, Su Shiung Lam, Christian Sonne Jan 2023

Vinyl Chloride Accident Unleashes A Toxic Legacy, Chengjun Li, Peng Gao, Riqing Yu, Huan Zhong, Mengjie Wu, Su Shiung Lam, Christian Sonne

Biology Faculty Publications and Presentations

A railroad accident on February 3, 2023, led to the release and combustion of 115,580 gallons, equivalent to over 437,000 L, of vinyl chloride monomer (VCM) in East Palestine, Ohio [1]. This monomer is used in polyvinyl chloride (PVC) production, and its burning produces additional toxins such as hydrochloric acid and lethal phosgene, known as a notorious chemical weapon during World War I


Machine Learning-Driven Exploration Of Drug Therapies For Triple-Negative Breast Cancer Treatment, Aman Chandra Kaushik, Zhongming Zhao Jan 2023

Machine Learning-Driven Exploration Of Drug Therapies For Triple-Negative Breast Cancer Treatment, Aman Chandra Kaushik, Zhongming Zhao

Faculty, Staff and Student Publications

Breast cancer is the second leading cause of cancer death in women among all cancer types. It is highly heterogeneous in nature, which means that the tumors have different morphologies and there is heterogeneity even among people who have the same type of tumor. Several staging and classifying systems have been developed due to the variability of different types of breast cancer. Due to high heterogeneity, personalized treatment has become a new strategy. Out of all breast cancer subtypes, triple-negative breast cancer (TNBC) comprises ∼10%-15%. TNBC refers to the subtype of breast cancer where cells do not express estrogen receptors, …


Integrating Feminist Approaches In Counseling Work With Adult Women, Kristen M. Toole Jan 2023

Integrating Feminist Approaches In Counseling Work With Adult Women, Kristen M. Toole

Adultspan Journal

The scope of ‘women’s issues’ in counseling is an ever-evolving landscape. Recent events such as the reversal of Roe v. Wade and the disproportionate impact of COVID-19 on women serve as powerful reminders of the necessity of this focus while underscoring a deep-rooted history of oppressive patriarchal structures. Therefore, counselors must remain informed of the unique considerations surrounding adult women in counseling and acquire proficiency in versatile techniques to meet this population’s nuanced needs. This article examines the complexity of contemporary womanhood and explores the fundamentals of Feminist Counseling Theory (FCT), a holistic, multiculturally conscious, social justice theory in counseling. …


Recognizing Ableism And Practicing Disability Humility: Conceptualizing Disability Across The Lifespan, Katherine M. Atkins, Tamekia Bell, Tilottama Roy-White, Maria Page Jan 2023

Recognizing Ableism And Practicing Disability Humility: Conceptualizing Disability Across The Lifespan, Katherine M. Atkins, Tamekia Bell, Tilottama Roy-White, Maria Page

Adultspan Journal

Disability culture is often misunderstood by counselors who lack extensive training in working with individuals with disabilities (IWDs) (Stuntzner & Hartley, 2014). This quantitative study used the Counseling Clients with Disability Survey (CCDS) to explore the beliefs and perceived knowledge of counselors-in-training (CITs), counselors, and counselor educators regarding preparation to counsel IWDs, which is particularly important as disability status can change across the lifespan, and given that the Council for Accreditation of Counseling and Related Educational Programs (CACREP) Standards Review Committee provided a guide to the draft standards incorporating the infusion of disability concepts. Results indicate that counselors were competent …


A Clinical Practice Guideline For Managing Behavioral Problems In Persons With Dementia, Ken J. Brinker Jan 2023

A Clinical Practice Guideline For Managing Behavioral Problems In Persons With Dementia, Ken J. Brinker

Walden Dissertations and Doctoral Studies

AbstractAs the baby boom generation ages, the demand for effective nursing care for patients diagnosed with dementia has greatly increased. The challenges associated with dementia include a patient’s inability to focus, pay attention, and follow conversations. Patients often become forgetful, angry, frustrated, and aggressive with family members and caregivers. The medical providers and administrators at a long-term care facility needed assistance in developing a clinical practice guideline for managing behaviors demonstrated by patients with dementia. The project question centered on the identification of current evidence supporting a clinical practice guideline for nursing practice for unpredictable behaviors demonstrated by residents diagnosed …


Pathways To Sustainability: Industry, Development, Business, Agriculture, Economy, And Politics, Andreas Hernandez, Pablo Arias-Benavides, Dayana C.M. Machada, Ousmane Pame, Alice Main, Per Moller Jan 2023

Pathways To Sustainability: Industry, Development, Business, Agriculture, Economy, And Politics, Andreas Hernandez, Pablo Arias-Benavides, Dayana C.M. Machada, Ousmane Pame, Alice Main, Per Moller

Geography and Environmental Studies Faculty Publications

In this chapter we examine six compelling on-the-ground experiences, which are demonstrating pathways to sustainability, resilience and regeneration. Each case opens a pathway to sustainability in a key sphere of human activity: industry, development, business, agriculture, economy and politics. These experiences are creating new social imaginaries embodied in the practical forms of new politics and economics aimed at profound democratizations of human life, and towards a creative realignment of humans with the rest of the web of life. These social imaginaries are both open and encompassing. They are open in the sense that they can be filled with new possibilities …


Beyond Negation And Excluded Middle: An Exploration To Embrace The Otherness Beyond Classical Logic System And Into Neutrosophic Logic, Florentin Smarandache, Victor Christianto Jan 2023

Beyond Negation And Excluded Middle: An Exploration To Embrace The Otherness Beyond Classical Logic System And Into Neutrosophic Logic, Florentin Smarandache, Victor Christianto

Branch Mathematics and Statistics Faculty and Staff Publications

As part of our small contribution in dialogue toward better peace development and reconciliation studies, and following Toffler & Toffler’s War and Antiwar (1993), the present article delves into a realm of logic beyond the traditional confines of negation and the excluded middle principle, exploring the nuances of "Otherness" that transcend classical and Nagatomo logics. Departing from the foundational premises of classical Aristotelian logic systems, this exploration ventures into alternative realms of reasoning, specifically examining Neutrosophic Logic and Klein bottle logic (cf. Smarandache, 2005). The study challenges conventional boundaries and explores the implications of embracing paradoxes and self-reference in logic …


Disparate Population And Holobiont Structure Of Pocilloporid Corals Across The Red Sea Gradient Demonstrate Species-Specific Evolutionary Trajectories, Carol Buitrago-López, Anny Cárdenas, Benjamin C.C. Hume, Thierry Gosselin, Fabian Staubach, Manuel Aranda, Daniel J. Barshis, Yvonne Sawall, Christian R. Voolstra Jan 2023

Disparate Population And Holobiont Structure Of Pocilloporid Corals Across The Red Sea Gradient Demonstrate Species-Specific Evolutionary Trajectories, Carol Buitrago-López, Anny Cárdenas, Benjamin C.C. Hume, Thierry Gosselin, Fabian Staubach, Manuel Aranda, Daniel J. Barshis, Yvonne Sawall, Christian R. Voolstra

Biological Sciences Faculty Publications

Global habitat degradation heightens the need to better understand patterns of genetic connectivity and diversity of marine biota across geographical ranges to guide conservation efforts. Corals across the Red Sea are subject to pronounced environmental differences, but studies so far suggest that animal populations are largely connected, excepting evidence for a genetic break between the northern-central and southern regions. Here, we investigated population structure and holobiont assemblage of two common pocilloporid corals, Pocillopora verrucosa and Stylophora pistillata, across the Red Sea. We found little evidence for population differentiation in P. verrucosa, except for the southernmost site. Conversely, S. …


Global Phylogenomic Assessment Of Leptoseris And Agaricia Reveals Substantial Undescibed Diversity At Mesophotic Depths, J. C. Gijsbers, N. Englebert, K. E. Prata, M. Pichon, Z. Dinesen, R. Brunner, G. Eyal, F. L. González-Zapata, S. E. Kahng, K. R. W. Latijnhouwers, P. Muir, V. Z. Radice, J. A. Sánchez, M. J. A. Vermeij, O. Hoegh-Guldberg, S. J. Jacobs, P. Bongaerts Jan 2023

Global Phylogenomic Assessment Of Leptoseris And Agaricia Reveals Substantial Undescibed Diversity At Mesophotic Depths, J. C. Gijsbers, N. Englebert, K. E. Prata, M. Pichon, Z. Dinesen, R. Brunner, G. Eyal, F. L. González-Zapata, S. E. Kahng, K. R. W. Latijnhouwers, P. Muir, V. Z. Radice, J. A. Sánchez, M. J. A. Vermeij, O. Hoegh-Guldberg, S. J. Jacobs, P. Bongaerts

Biological Sciences Faculty Publications

Background: Mesophotic coral communities are increasingly gaining attention for the unique biological diversity they host, exemplified by the numerous mesophotic fish species that continue to be discovered. In contrast, many of the photosynthetic scleractinian corals observed at mesophotic depths are assumed to be depth-generalists, with very few species characterised as mesophotic-specialists. This presumed lack of a specialised community remains largely untested, as phylogenetic studies on corals have rarely included mesophotic samples and have long suffered from resolution issues associated with traditional sequence markers.

Results: Here, we used reduced-representation genome sequencing to conduct a phylogenomic assessment of the two dominant mesophotic …