Digital Commons Network^™

Holocene Rice Rats (Genus Oryzomys) From The Upper Mississippi River Drainage Basin, Hugh H. Genoways

Zea E-Books Collection

The expansion and collapse of the geographic range of the Texas rice rat (Oryzomys texensis) in the upper Mississippi River drainage basin at the end of the Holocene was a unique event in North American mammals. In a period of about 4000 years with a point of origin near the American Bottom in Illinois, these small rodents extended their geographic range in a straight-line distance of over 950 km to the west into Nebraska and the same distance to the east into Pennsylvania. Then in less than 400 years this range expansion collapsed back to a point where …

The Effect Of Heat Treatment And Chemical Treatment On Natural Fibre To The Durability Of Wood Plastic Composites – A Review, Nuratiqah Asyiqin Mohd Nasharudin, Nur Fatihah Sulaiman, Nurul Aziemah Mohammad, Wan Nor Raihan Wan Jaafar, Falah Abu Dr., Siti Norasmah Surip

Journal of Materials Exploration and Findings

The application of WPC is not only limited to indoor applications but has been extended to exterior applications where properties of WPC could compromise during service life. WPC was derived from wood fiber of various sizes to reinforce polymers. Wood fiber has the advantage of a cheaper price, being abundantly available, and ease of processing, however, the critical factor is its hydrophilic nature, where moisture absorption is likely to occur. Thus, treatments for reducing the hydrophilicity of wood fibers are applied. By treatment of wood fiber, the surface impurities were removed, leaving the roughened surface of fibers, thus providing a …

Neural Mechanisms Of Resiliency And Susceptibility After Repeated Social Defeat, Christy R. Wayne

LSU Doctoral Dissertations

Social defeat is a powerful experience leading to drastic changes in physiology and behavior, many of which are negative. For example, repeated social defeat in vertebrates results in reduced reproductive success, sickness, and behavioral abnormalities that threaten individual survival and species persistence. However, little is known about what neural mechanisms are involved in determining whether an individual is resilient or susceptible to repeated social defeat stress. I used a resident-intruder experiment in the African cichlid fish, Astatotilapia burtoni, to create and investigate the behavior and neural correlates of these two opposing groups. Resilient fish used both searching and freezing behaviors …

Glucose-Enhanced Oxidative Stress Resistance—A Protective Anticipatory Response That Enhances The Fitness Of Candida Albicans During Systemic Infection, De Larcombe, Im Bohovych, A Pradhan, Q Ma, E Hickey, I Leaves, G Cameron, Gm Avelar, Lj De Assis, Ds Childers, Jm Bain, K Lagree, Ap Mitchell, Mg Netea, Lp Erwig, Nar Gow, Ajp Brown

Peninsula Medical School

Most microbes have developed responses that protect them against stresses relevant to their niches. Some that inhabit reasonably predictable environments have evolved anticipatory responses that protect against impending stresses that are likely to be encountered in their niches–termed “adaptive prediction”. Unlike yeasts such as Saccharomyces cerevisiae, Kluyveromyces lactis and Yarrowia lipolytica and other pathogenic Candida species we examined, the major fungal pathogen of humans, Candida albicans, activates an oxidative stress response following exposure to physiological glucose levels before an oxidative stress is even encountered. Why? Using competition assays with isogenic barcoded strains, we show that “glucose-enhanced oxidative stress resistance” phenotype …

Accumulation Of Chronic Disease Among Survivors Of Childhood Cancer Predicts Early Mortality, Adam J Esbenshade, Lu Lu, Debra L Friedman, Kevin C Oeffinger, Gregory T Armstrong, Kevin R Krull, Joseph P Neglia, Wendy M Leisenring, Rebecca Howell, Robyn Partin, Amy Sketch, Leslie L Robison, Kirsten K Ness

Faculty, Staff and Student Publications

Purpose: Cancer survivors develop cancer and treatment-related morbidities at younger than normal ages and are at risk for early mortality, suggestive of an aging phenotype. The Cumulative Illness Rating Scale for Geriatrics (CIRS-G) is specifically designed to describe the accumulation of comorbidities over time with estimates of severity such as total score (TS) which is a sum of possible conditions weighted by severity. These severity scores can then be used to predict future mortality.

Methods: CIRS-G scores were calculated in cancer survivors and their siblings from Childhood Cancer Survivor Study cohort members from two time points 19 years apart and …

A Critical Perspective Over Whether And How To Acknowledge The Use Of Artificial Intelligence (Ai) In Qualitative Studies, Prokopis Christou

The Qualitative Report

There has been a rise in scepticism regarding the use of Artificial Intelligence (AI) in qualitative research tasks such as critical reviews, conceptualization, thematic and content analysis, and potentially theory development. Concerns have been raised over the possibility that researchers intentionally avoid discussing or even mentioning the use of AI in their studies for a variety of reasons, including the "fear" of criticism and rejection of their papers. The purpose of this paper, which is guided by critical perspective principles, is to examine the controversy surrounding the appropriate recognition of AI in theoretical discussions and qualitative research, including conceptual, critical …

The Effects Of Ketones On Brain Metabolism And Cognition, Erin Reiko Saito

Theses and Dissertations

The brain is one of the most energetically demanding organs within the human body and is cognitively susceptible to energetic deficits such that the rise in obesity, insulin resistance, and Alzheimer’s disease in recent decades pose a substantial threat to cognitive longevity. The therapeutic efficacy of ketones are well-established in epilepsy and are currently being applied to other disease states. Alzheimer’s disease is characterized by impairments in brain glucose uptake and metabolism in regions relevant to learning, memory, and cognition that progress with the disease. While brain glucose uptake is impaired, ketone uptake is unaltered, potentially enabling ketones to fuel …

Unmasking Structural Racism In U.S. Medical Education: Advancing Equity For Underrepresented Medical Students, Daryl O. Traylor, Eboni E. Anderson, Destiney Kirby, Asia Nichole Hodges, Brianna Clark, Stephen Sinatra Jr.

Journal of Social, Behavioral, and Health Sciences

The COVID pandemic cast a harsh light on the structural and systemic health inequalities that exist in American society and in U.S. medical education. Black and Brown communities were disproportionately affected, and the pandemic highlighted the need for a diverse physician and healthcare workforce. Both the lack of equitable, high-quality healthcare in underrepresented communities and the obstacles that students who are underrepresented in medicine (URiM) experience in medical school are direct consequences of the structural racism that flourishes in U.S. medical schools and healthcare institutions. In this article, we explain structural racism and how it has manifested itself in medical …

Biological Formation Of Ethylene, Robert P. Hausinger, Simahudeen Bathir Jaber Sathik Rifayee, Midhun George Thomas, Shramana Chatterjee, Jian Hu, Christo Christov

Michigan Tech Publications

This review summarizes the structures, biochemical properties, and mechanisms of two major biological sources of ethylene, the ethylene-forming enzyme (EFE) and 1-aminocyclopropane-1-carboxylic acid (ACC) oxidase (ACCO). EFE is found in selected bacteria and fungi where it catalyzes two reactions: (1) the oxygen-dependent conversion of 2-oxoglutarate (2OG) to ethylene plus three molecules of CO2/bicarbonate and (2) the oxidative decarboxylation of 2OG while transforming l-arginine to guanidine and l-Δ1-pyrroline-5-carboxylic acid. ACCO is present in plants where it makes the plant hormone by transforming ACC, O2, and an external reductant to ethylene, HCN, CO2, and water. Despite catalyzing distinct chemical reactions, EFE and …

Mct4-Dependent Lactate Secretion Suppresses Antitumor Immunity In Lkb1-Deficient Lung Adenocarcinoma, Yu Qian, Ana Galan-Cobo, Irene Guijarro, Minghao Dang, David Molkentine, Alissa Poteete, Fahao Zhang, Qi Wang, Jing Wang, Edwin Parra, Apekshya Panda, Jacy Fang, Ferdinandos Skoulidis, Ignacio I Wistuba, Svena Verma, Taha Merghoub, Jedd D Wolchok, Kwok-Kin Wong, Ralph J Deberardinis, John D Minna, Natalie I Vokes, Catherine B Meador, Justin F Gainor, Linghua Wang, Alexandre Reuben, John V Heymach

Faculty, Staff and Student Publications

Inactivating STK11/LKB1 mutations are genomic drivers of primary resistance to immunotherapy in KRAS-mutated lung adenocarcinoma (LUAD), although the underlying mechanisms remain unelucidated. We find that LKB1 loss results in enhanced lactate production and secretion via the MCT4 transporter. Single-cell RNA profiling of murine models indicates that LKB1-deficient tumors have increased M2 macrophage polarization and hypofunctional T cells, effects that could be recapitulated by the addition of exogenous lactate and abrogated by MCT4 knockdown or therapeutic blockade of the lactate receptor GPR81 expressed on immune cells. Furthermore, MCT4 knockout reverses the resistance to PD-1 blockade induced by LKB1 loss in syngeneic …

Revisional Bariatric Surgery For Weight Recurrence Or Surgical Nonresponse, Erin Briggs, Sunjay Kumar, Francesco Palazzo, Talar Tatarian

Department of Surgery Faculty Papers

No abstract provided.

Leptopilina Heterotoma Responds To A Change In Host Species With Specific Altered Protein Expression, Dakota Fuss

Theses and Dissertations

Leptopilina heterotoma is a generalist endoparasitoid wasp that parasitizes Drosophila spp. worldwide. When L. heterotoma oviposits within the prey larvae it also injects venom to suppress the melanotic encapsulation immune response of the host. Without the venom to protect the egg(s) from host immunity, the parasitism would result in failure. L. heterotoma venom is composed of proteins, non-protein compounds, and virus-like particles (VLPs), of which proteins make up the majority of the venom and are the main determining factor conferring venom function (Goecks et al. 2013, Heavner et al. 2013, Moreau and Asgari 2015, Small et al. 2012). Previous studies …

Potential Biomarker Of Brain Response To Opioid Antagonism In Adolescents With Eating Disorders: A Pilot Study., Stephani L. Stancil, Hung-Wen Yeh, Morgan G. Brucks, Amanda S. Bruce, Michaela Voss, Susan Abdel-Rahman, William M. Brooks, Laura E. Martin

Manuscripts, Articles, Book Chapters and Other Papers

BACKGROUND: Eating Disorders (ED) affect up to 5% of youth and are associated with reward system alterations and compulsive behaviors. Naltrexone, an opioid antagonist, is used to treat ED behaviors such as binge eating and/or purging. The presumed mechanism of action is blockade of reward activation; however, not all patients respond, and the optimal dose is unknown. Developing a tool to detect objective drug response in the brain will facilitate drug development and therapeutic optimization. This pilot study evaluated neuroimaging as a pharmacodynamic biomarker of opioid antagonism in adolescents with ED.

METHODS: Youth aged 13-21 with binge/purge ED completed functional …

Who Puts The "Support" In Supportive Housing? The Impact Of Housing Staff On Resident's Well-Being, And The Potential Moderating Role Of Self-Determination, Kenna Estell Dickard

Dissertations and Theses

The provision of residential and community-based services for individuals with serious mental illness (SMI) has become increasingly important following the deinstitutionalization movement. Much of the existing research on supportive housing focuses on housing outcomes rather than exploring how the program helps its residents thrive in the broader community. This study draws upon data collected from 176 people with SMI residing in 16 supportive housing locations in Portland, Oregon. Analyses employed an ecological approach, exploring how housing staff support relates to residents' well-being at three levels of analysis: loneliness (interpersonal level), residential satisfaction (housing and neighborhood level), and sense of community …

Roving Methyltransferases Generate A Mosaic Epigenetic Landscape And Influence Evolution In Bacteroides Fragilis Group, Michael J Tisza, Derek D N Smith, Andrew E Clark, Jung-Ho Youn, Pavel P Khil, John P Dekker

Faculty, Staff and Students Publications

Three types of DNA methyl modifications have been detected in bacterial genomes, and mechanistic studies have demonstrated roles for DNA methylation in physiological functions ranging from phage defense to transcriptional control of virulence and host-pathogen interactions. Despite the ubiquity of methyltransferases and the immense variety of possible methylation patterns, epigenomic diversity remains unexplored for most bacterial species. Members of the Bacteroides fragilis group (BFG) reside in the human gastrointestinal tract as key players in symbiotic communities but also can establish anaerobic infections that are increasingly multi-drug resistant. In this work, we utilize long-read sequencing technologies to perform pangenomic (n = …

The Role Of Metallothioneins In Copper Homeostasis In Arabidopsis, Matthew Vandal

LSU Doctoral Dissertations

Copper (Cu) is a transition metal that is an essential nutrient for plants and is required for a number of critical processes. Therefore, proper homeostasis of copper is vital for plant life and must be tightly regulated. Metallothioneins are small molecular weight proteins, rich in cysteine residues and have the capability of binding to several different transition metals such as copper. Cu induces the expression of MTs, therefore they are believed to be involved in Cu transport, however their true functions have yet to be resolved. T-DNA insertions were identified in four Arabidopsis MT genes expressed in vegetative tissues, and …

“Why We Play The Game”: An Exploration Of Sport Employees’ Conceptualizations Of Meaningful Work, Nathan Baer

LSU Doctoral Dissertations

Modern sport management scholars have looked to pair the fields of positive organizational behavior (POB) and human resource development (HRD) with sport management to enhance the productivity of sport organizations through their employees (see Kim et al., 2019; Kim et al., 2023a; Kim et al., 2023b; Kim et al., 2017; Oja et al., 2015, 2020; Oja et al., 2022; Schuetz et al., 2022; Zvosec et al., 2021). One area of study that has received recent attention amongst sport management scholars is meaningful work (Baer et al., 2021; Oja et al., 2022), an emerging employee well-being metric whose definition is often …

Sportsman's Paradox: Conservationism And Social Progress In Modern Louisiana, Jacob T. Gautreaux

LSU Doctoral Dissertations

Over the nineteenth and early twentieth centuries, sportsmen increasingly identified Louisiana as a destined paradise due to the abundant flora and fauna. Confirmed in the legendary visits of Theodore Roosevelt in the early 1900s, the conception soon served a dual purpose as individuals like the Tabasco Sauce patriarch, E. A. McIlhenny, coopted the visualization as a lure for business investment into the nascent industrial interests within the coastal region of the state. However, it should be noted that in the 1930s and beyond, cultural conservationists like McIlhenny and Caroline Dormon preserved elements of under-documented cultures throughout the state, although usually …

Reef Fish Movement Dynamics And Recruitment To Artificial Habitat, Jade Carver

LSU Master's Theses

Artificial reefs provide critical habitat for fish in areas lacking benthic structure, yet our understanding of how artificial reefs function and develop is limited. Here, changes in reef fish community assemblages were monitored using baited remote underwater video (BRUV) surveys (n=6) before and after a new artificial reef was deployed. Movement of red snapper (Lutjanus campechanus, n=20) and gray snapper (Lutjanus griseus, n=20) between nearby platforms (n=3) and the new artificial reef was examined using acoustic telemetry, and residency was calculated for fish associated with platforms and the artificial reef …

Myc Regulates Csf1 Expression Via Microrna 17/20a To Modulate Tumor-Associated Macrophages In Osteosarcoma, Bikesh K Nirala, Tajhal D Patel, Lyazat Kurenbekova, Ryan Shuck, Atreyi Dasgupta, Nino Rainusso, Cristian Coarfa, Jason T Yustein

Faculty, Staff and Students Publications

Osteosarcoma (OS) is the most common primary bone tumor of childhood. Approximately 20%-30% of OSs carry amplification of chromosome 8q24, which harbors the oncogene c-MYC and correlates with a poor prognosis. To understand the mechanisms that underlie the ability of MYC to alter both the tumor and its surrounding tumor microenvironment (TME), we generated and molecularly characterized an osteoblast-specific Cre-Lox-Stop-Lox-c-MycT58A p53fl/+ knockin genetically engineered mouse model (GEMM). Phenotypically, the Myc-knockin GEMM had rapid tumor development with a high incidence of metastasis. MYC-dependent gene signatures in our murine model demonstrated significant homology to the human hyperactivated MYC OS. We established that …

“I Have Learned That Things Are Different Here”: Understanding The Transitional Challenges With Technology Use After Relocating To The Usa, Prakriti Dumaru, Ankit Shrestha, Rizu Paudel, Arezou Behfar, Hanieh Atashpanjeh, Mahdi Nasrullah Al-Ameen

Computer Science Student Research

In the age of globalization, international students from developing countries (for brevity, we term them as ‘international students’ in this paper, unless otherwise specified) have become an integral part of the U.S. education system. After relocation to the USA, first-generation international students undergo not only societal differences but also experience changes in the technology space – posing unique challenges for them. Our semi-structured interviews with 26 participants who were pursuing education at the time of our study, or had recently graduated informed us of their adaptation to the technology landscape in the USA; our analysis revealed the underlying challenges in …

Evaluation Of Salvinia Weevil Establishment, Dispersal, And Environmental Pressures Impacting The Giant Salvinia Biological Control Program, Korey Danielle Pham

LSU Master's Theses

Giant salvinia (Salvinia molesta Mitchell), an invasive free-floating aquatic fern, invaded the Toledo-Bend reservoir along the Texas-Louisiana border in the 1990s. The rapid spread threatens critical ecosystems, economies, and cultural services by altering water quality, and impacting fishing, hunting, and navigation. To combat this issue, the LSU AgCenter has been rearing and distributing the salvinia weevil (Cyrtobagous salviniae Calder and Sands), which has demonstrated effectiveness in reducing giant salvinia populations within a matter of months to a few years. The first study assessed the impact of propagule pressure on salvinia weevil effectiveness in outdoor mesocosms and revealed that …

The Contribution Of Various In Vitro Methodologies To Comprehending The Filling Ability Of Root Canal Pastes In Primary Teeth, Claire El Hachem, Jean C.A. Chedid, Walid Nehme, Marc K. Kaloustian, Nabil Ghosn, Morgane Rabineau, Naji Kharouf, Youssef Haikel, Davide Mancino

Pacific Faculty Work

A void-free obturation during root canal treatment on primary teeth is currently very difficult to attain. In this study, the pulpectomy filling abilities of Bio-C Pulpecto (Angelus, Basil, Londrina, Paraná, Brazil) and of zinc oxide eugenol, or “ZOE” (DenPro, Prevest, New York, NY, USA), were compared using several in vitro techniques. Therefore, 30 primary anterior teeth were used in the present in vitro study. Analysis of variance (ANOVA), including a multiple comparison procedure (Holm-Sidak method, Dunn’s Method, or Tukey test), was used. On micro-CT, Bio-C Pulpecto exhibited higher void percentages than did ZOE (10.3 ± 3.8%, and 3.5 ± 1.3%), …

Plant Sentience: Not Now, Maybe Later?, Helen Tiffin

Animal Sentience

Segundo-Ortin’s target article provides compelling evidence for physiological and behavioral complexity in plants, bringing us closer to a recognition of some kind of plant cognition – but it does not as yet offer firm grounds for inferring sentience (feeling) in plants, The recent history of the scientific demonstration and recognition of animalsentience in invertebrates, for example, does not entirely rule out the possibility that further research might provide support for plant sentience. Should this ever turn out to be the case, the ethical problems raised are not insurmountable, and would not threaten the now proven case for animal sentience

Susceptibility Of Spodoptera Frugiperda Populations In The Southern Region Of The U.S. To Common Bt Proteins And Performance Of A Dual-Gene Resistant Helicoverpa Zea Strain On Common Pyramided Bt Corn Traits, Tiago H. Da Silva

LSU Master's Theses

The fall armyworm (Spodoptera frugiperda) and corn earworm (Helicoverpa zea) are two polyphagous pests that, in the Americas, are targeted by transgenic corn and cotton expressing Bacillus thuringiensis (Bt) proteins. A previous study during 2011-2013 demonstrated practical resistance to Cry1F corn in S. frugiperda in the southeastern seaboard of the U.S., while resistance of H. zea to Bt corn and cotton containing cry1A and cry2A genes has widely occurred in the U.S. The first objective of this study was to investigate the current susceptibility status to four Bt proteins commonly expressed in Bt corn plants, including …

Arda Remade (And Remade, And Remade…); Or, Entropy, Einstein’S Blackboard, And R=Cⅇ^(Α(T-T_0 )∕3) [Sin⁡〖Β/2 (T-T_0 )〗 ]^(2∕3), Being An Exploration Of Overlapping Themes In The Venn Diagram Of The History Of Middle-Earth, The History Of Middle-Earth, And The History Of Twentieth Century Cosmology, Kristine Larsen

Journal of Tolkien Research

The concept of the "long defeat" in Tolkien's works has been widely studied, and connections drawn to the scientific idea of entropy. This paper extends those studies through the lenses of the history and popularization of science in Tolkien's lifetime, in particular drawing connections to the so-called phoenix or cyclic universe models. In addition, previously published work on cyclical time in Tolkien's works is extended to include scientific concepts of the three arrows of time.

Hydrolysis Of Chlorogenic Acid In Sunflower Flour Increases Consumer Acceptability Of Sunflower Flour Cookies By Improving Cookie Color, Christine Lo Verde, Criselda Toto Pacioles, Natalie Paterson, Jamie Chin, Cedric P. Owens, Lilian W. Senger

Food Science Faculty Articles and Research

Sunflower meal, a byproduct of sunflower oil pressing, is not commonly used in alkaline baking applications. This is because chlorogenic acid, the main phenolic antioxidant in sunflower seeds, reacts with protein, giving the baked product a green discoloration. Our group previously demonstrated that a chlorogenic acid esterase from Lactobacillus helveticus hydrolyzes chlorogenic acid in sunflower dough cookie formulations, resulting in cookies that were brown instead of green. This study presents a sensory analysis to determine the acceptability of enzymatically upcycled sunflower meal as an alternative protein source for those allergic to meals from legumes or tree nuts. We hypothesized that …

Proteome Wide Association Studies Of Lrrk2 Variants Identify Novel Causal And Druggable Proteins For Parkinson's Disease, Bridget Phillips, Daniel Western, Lihua Wang, Jigyasha Timsina, Yichen Sun, Priyanka Gorijala, Chengran Yang, Anh Do, Niko-Petteri Nykänen, John C Morris, Suzanne E Schindler, Anne M Fagan, Joel S Perlmutter, Laura Ibanez, Richard J Perrin, Yun Ju Sung, Carlos Cruchaga, Et Al.

2020-Current year OA Pubs

Common and rare variants in the LRRK2 locus are associated with Parkinson's disease (PD) risk, but the downstream effects of these variants on protein levels remain unknown. We performed comprehensive proteogenomic analyses using the largest aptamer-based CSF proteomics study to date (7006 aptamers (6138 unique proteins) in 3107 individuals). The dataset comprised six different and independent cohorts (five using the SomaScan7K (ADNI, DIAN, MAP, Barcelona-1 (Pau), and Fundació ACE (Ruiz)) and the PPMI cohort using the SomaScan5K panel). We identified eleven independent SNPs in the LRRK2 locus associated with the levels of 25 proteins as well as PD risk. Of …

Thermosensitive And Antioxidant Wound Dressings Capable Of Adaptively Regulating Tgfβ Pathways Promote Diabetic Wound Healing, Hong Niu, Ya Guan, Ting Zhong, Liang Ma, Mohamed Zayed, Jianjun Guan

2020-Current year OA Pubs

Various therapies have been utilized for treating diabetic wounds, yet current regiments do not simultaneously address the key intrinsic causes of slow wound healing, i.e., abnormal skin cell functions (particularly migration), delayed angiogenesis, and chronic inflammation. To address this clinical gap, we develop a wound dressing that contains a peptide-based TGFβ receptor II inhibitor (PTβR2I), and a thermosensitive and reactive oxygen species (ROS)-scavenging hydrogel. The wound dressing can quickly solidify on the diabetic wounds following administration. The released PTβR2I inhibits the TGFβ1/p38 pathway, leading to improved cell migration and angiogenesis, and decreased inflammation. Meanwhile, the PTβR2I does not interfere with …

High-Resolution Cryo-Em Structure Of The Pseudomonas Bacteriophage E217, Fenglin Li, Chun-Feng Hou, Ravi K. Lokareddy, Ruoyu Yang, Francesca Forti, Federica Briani, Gino Cingolani

Department of Biochemistry and Molecular Biology Faculty Papers

E217 is a Pseudomonas phage used in an experimental cocktail to eradicate cystic fibrosis-associated Pseudomonas aeruginosa. Here, we describe the structure of the whole E217 virion before and after DNA ejection at 3.1 Å and 4.5 Å resolution, respectively, determined using cryogenic electron microscopy (cryo-EM). We identify and build de novo structures for 19 unique E217 gene products, resolve the tail genome-ejection machine in both extended and contracted states, and decipher the complete architecture of the baseplate formed by 66 polypeptide chains. We also determine that E217 recognizes the host O-antigen as a receptor, and we resolve the N-terminal portion …