Digital Commons Network^™

Cruise, A Tool For The Detection Of Iterons In Circular Rep-Encoding Single-Stranded Dna Viruses, Adam Jones, George W. Kasun, Joel Stover, Kenneth M. Stedman, Ignacio De La Higuera

Biology Faculty Publications and Presentations

Iterons are short, repeated DNA sequences that are important for the replication of circular single-stranded DNA viruses. No tools that can reliably predict iterons are currently available. The CRUcivirus Iteron SEarch (CRUISE) tool is a computational tool that identifies iteron candidates near stem-loop structures in viral genomes.

Suicide At The Intersection Of Race And Gender, Marina Geider

Masters Theses

Sociological studies have examined suicide rate differences between groups since the work of Durkheim in 1897, and current literature still draws on his classic theories and methods. Although research has begun identifying the social factors that affect the suicides of Black and White populations differentially, little progress has been made towards an understanding of Black female suicide. The present study takes an intersectional approach to Durkheim's social integration-regulation thesis to bridge this gap. Several negative binomial regression analyses were employed to model suicide counts for Black men, Black women, non-Hispanic White men, and non-Hispanic White women in the United States. …

Evolution Of Journal Of Medical Education To Open Access, Ming-Been Lee

Journal of Medical Education

Modern medical education in Taiwan began in 1897. The National Taiwan University College of Medicine (NTUCM) led medical education reform by introducing a new curriculum and small class teaching in August 1992. To celebrate the 100th anniversary of Taiwan medical education, the NTUCM published the Journal of Medical Education (JME) in Mandarin in 1997, hoping to share the education reform and further improve the quality of medical education in Taiwan. For more than 26 years, the JME has grown and served as the platform that supports the work of medical education researchers, medical professionals, administrators, and policymakers. Along with our …

Dnp Final Report: Multimodal Pain Management To Improve Patient Satisfaction In Total Joint Replacement Patients, Dana A. Carns

DNP Final Reports

Pain is a costly result of total joint replacement (TJR) surgery. The effect of pain can extend not only to chronic medical problems for patients but also to the hospital’s bottom line by decreasing patient satisfaction. A systematic literature search was performed, and evidence was appraised that supported the efficacy of a standardized multimodal pain management protocol to decrease pain and improve satisfaction in TJR patients. The evidence-based multimodal pain management protocol was implemented during a one-month period in patients undergoing total knee or total hip replacements. Key outcomes were examined and compared to the body of evidence and to …

Cell Division Dynamics Of Escherichia Coli In Extreme Environments, Steven P. Murray

Graduate Theses and Dissertations

Life is remarkable in how resilient it can be. Many organism, classified as ex- tremophiles, can not only survive in extreme environments, but they can thrive in them. In the search for extraterrestrial life, the best candidates to harbor life exist with some kind of extreme condition. Europa, for example, is a favorite for the possibility of accommodating life as we know it within our solar system. Thought there is believed to be a liquid ocean under its icy surface, this habitat would be under immense pressures and high salinity. To best know where to look for extraterrestrial life, it …

Amino Acid Nutrition In Broiler Breeders, Jordan Weil

Graduate Theses and Dissertations

Amino acids (AA) are commonly referred to as the building blocks of protein due to their role in the synthesis of proteins. Considering these nutrients are involved in growth and metabolism, much emphasis is placed on determining the dietary requirements of amino acids. Therefore, an experiment was conducted to evaluate the amino acid requirements of performance parameters such as egg weights, egg production, egg mass, feed conversion ratios, and body weight gain in two age groups of broiler breeders. In this experiment, 648 Cobb 700 broiler breeder hens were placed in individual cages to determine the amino acid requirements of …

Ultrasound Mediated Tissue Growth In Bioinspired Scaffolds, Marco Fielder

Graduate Theses and Dissertations

Porous scaffolds mechanically stimulated with ultrasound are used for the treatment of bone conditions such as osteoporosis or traumatic bone injury. However, one current issue in these treatment techniques is designing a scaffold structure with a high structural integrity that also does not impede tissue growth. A larger ultrasound wave transmission would also allow more of a scaffold to receive mechanical stimulation from ultrasound. Controlling mesenchymal stem cell seeding of tissue scaffolds also has potential for developing optimal seeding patterns to maximize or control tissue growth in the scaffold based on an individual’s physiology. There is also a need for …

Exploring Change And Stability In Counterterrorism Policy, Prosecution, And Sentencing Of Terrorists In America Over The Last Three Decades In The United States, Georgianna Grace Bettis

Graduate Theses and Dissertations

The purpose of the current study is to investigate the effects of legislation changes on how terrorists are adjudicated in American federal courts. The overarching question is: how have prosecutorial and sentencing outcomes changed in response to homeland security policy shifts over the last few decades? The project examines the impact of policy on changes to terrorists’ sentencing in three time periods, marked by three major events: The 1993 World Trade Center Attack, the 1995 Oklahoma City Bombing, and the attack on the Twin Towers (9/11/2001). In addition to terrorists’ demographic and background attributes (i.e., gender, age, terrorism category), the …

The Pacifican December 2022, University Of The Pacific

All Issues - Student Newspaper, The Pacifican, Pacific Weekly

No abstract provided.

Assessment Of Blood Pressure And Postural Control Mechanisms In Parkinson’S Disease During An Orthostatic Challenge, Rabie Fadil

Theses and Dissertations

Upon standing, 500–1000 mL of blood shifts from the central body compartments to the lower extremities and splanchnic circulation, leading to a decreased venous return to the heart, reduced cardiac output, and a consequent decline in blood pressure. In healthy individuals, the drop in blood pressure is quickly compensated via regulatory mechanisms. On the other hand, people with Parkinson’s disease may experience impaired reflex responses and a persistent drop in blood pressure (orthostatic hypotension, OH), leading to visual disturbances, loss of consciousness, postural instability, and fainting. Parkinson’s disease patients have impaired balance and gait control as a symptom of the …

Management Of Multisystem Inflammatory Syndrome In Children (Mis-C) In Resource Limited Settings: The Kenyan Experience, Angela Migowa, Pauline Samia, Del-Rossi Sean, Oliver Ombeva Malande, Jasmit Shah, Chemutai Kenei, Joy Ayaya, Daisy Jeruto, Laura Oyiengo, Laura Lewandowski

Paediatrics and Child Health, East Africa

Background: Since the onset of the recent COVID-19 pandemic, there have been growing concerns regarding multisystem inflammatory syndrome in children (MIS-C). This study aims to describe the clinico-epidemiological profile and challenges in management of MIS-C in low-middle income countries by highlighting the Kenyan experience.

Methods: A retrospective study at the Aga Khan University Hospital Nairobi, Avenue Hospital Kisumu and Kapsabet County Referral Hospital was undertaken to identify cases of MIS-C. A detailed chart review using the World Health Organization (WHO) data collection tool was adapted to incorporate information on socio-demographic details and treatment regimens.

Findings: Twenty children with MIS-C were …

Blackwater Fever And Acute Kidney Injury In Children Hospitalized With An Acute Febrile Illness: Pathophysiology And Prognostic Significance, Andrea Conroy, Michael Hawkes, Aleksandra Leligdowicz, Ivan Mufumba, Michelle Starr, Kathleen Zhong, Sophie Namasopo, Robert Opoka, Chandy John, Kevin C. Kain

Paediatrics and Child Health, East Africa

Background: Acute kidney injury (AKI) and blackwater fever (BWF) are related but distinct renal complications of acute febrile illness in East Africa. The pathogenesis and prognostic signifcance of BWF and AKI are not well understood.

Methods: A prospective observational cohort study was conducted to evaluate the association between BWF and AKI in children hospitalized with an acute febrile illness. Secondary objectives were to examine the association of AKI and BWF with (i) host response biomarkers and (ii) mortality. AKI was defned using the Kidney Disease: Improving Global Outcomes criteria and BWF was based on parental report of tea-colored urine. Host …

Addressing Meloidogyne Enterolobii Spread In The Sweetpotato Industry: Development Of A High Throughput Survey Detection Method For Root-Knot Nematodes And Quantification Of M. Enterolobii Damage On Storage Roots In Long-Term Assays, Julianna Culbreath

All Theses

Meloidogyne enterolobii is an aggressive root-knot nematode (RKN) species that has emerged as a significant pathogen of sweetpotato in the Southeastern US. Meloidogyne enterolobii is spread through the movement of infected ‘seed’ sweetpotatoes used for propagation, and the RKN resistance in commercial sweetpotato cultivars has proven ineffective against this nematode. This has prompted regulatory agencies to impose quarantines on regions infected with M. enterolobii. Sweetpotato storage roots can be rendered unmarketable due to M. enterolobii infection, resulting in potential overall yield loss. Visual detection of RKN in sweetpotato can be unreliable, and further distinguishing M. enterolobii from other RKN species …

Sources Of Calcium At Connexin 36 Gap Junctions In The Retina, Pui Man Rosalind Lai, Jee-Yeon Ryu, Sang-Cheol Park, Bradley A Gross, Lawrence D Dickinson, Sarajune Dagen, Mohammad Ali Aziz-Sultan, Alan S Boulos, Daniel L Barrow, H Hunt Batjer, Spiros Blackburn, Edward F Chang, P Roc Chen, Geoffrey P Colby, Garth Rees Cosgrove, Carlos A David, Arthur L Day, Kai U Frerichs, Mika Niemela, Steven G Ojemann, Nirav J Patel, Xiangen Shi, Edison P Valle-Giler, Anthony C Wang, Babu G Welch, Edie E Zusman, Scott T Weiss, Rose Du

Faculty, Staff and Student Publications

Background and Objectives

While somatic mutations have been well-studied in cancer, their roles in other complex traits are much less understood. Our goal is to identify somatic variants that may contribute to the formation of saccular cerebral aneurysms.

Methods

We performed whole-exome sequencing on aneurysm tissues and paired peripheral blood. RNA sequencing and the CRISPR/Cas9 system were then used to perform functional validation of our results.

Results

Somatic variants involved in supervillin (SVIL) or its regulation were found in 17% of aneurysm tissues. In the presence of a mutation in the SVIL gene, the expression level of SVIL …

Description Of Audiologic, Developmental, Ophthalmologic, And Neurologic Diagnoses At A Primary Care Clinic For Children In Foster Care, Jill Mcleigh, Lauren Malthaner, Melissa Reynoso, Kimberly Stone

Health Status, Outcomes, and Literacy and Healthcare Utilization

This study aimed to describe the prevalence of medically diagnosed audiologic, developmental, ophthalmologic, and neurologic conditions in a foster care primary care clinic and to identify any associations among these diagnoses and patient characteristics, placement type, and maltreatment type.

For questions about this study or others, please email [email protected]

childrens.com/fostercare

Germination And Early Seedling Growth Attributes Of Rice (Oryza Sativa L.) Cultivars Under Different Salinity (Nacl) Stresses [Research Note], Shahid Hussain, Shuli Liu, Rui Zhang, Yinglong Chen, Altaf Adil, Qigen Dai

The Philippine Agricultural Scientist

This study investigated the impact of different salinity stresses [0, 6.4, 12.8, 19.2, and 25.6 dS/m (NaCl)] on the final germination percentage, speed of germination, germination capacity, shoot and root length, seedling vigor index, and total plant dry weight of ten rice cultivars at germination and early seedling stages. Salinity stress significantly decreased the final germination percentage, speed of germination, germination capacity, shoot and root length, and seedling dry weight in all cultivars, with the most severe effects from level 19.2 and 25.6 dS/m NaCl. Rice cultivars were classified as tolerant, moderately tolerant, moderately susceptible, and susceptible based on reduction …

In Vitro Characterization Of Novel Compounds With Anti-Cancer Activity, Edgar Alonso Borrego Puerta

Open Access Theses & Dissertations

Two libraries of chemical compounds were analyzed for their cytotoxic activity against cancer and non-cancerous cell lines. In chapter 1, fourteen novel piperidones were tested on a panel of different cell lines to identify their cytotoxic activity. These compounds were found to have cytotoxic activity toward cancer cells with a cytotoxic concentration 50 (CC50) in the micromolar range. Furthermore, these fourteen compounds have selectivity preferentially towards cancer cells. Based on selectivity, and cytotoxicity, four compounds were selected for further characterization in the HL-60 cell line. The four compounds elicit apoptosis as measured by the externalization of the phospholipid phosphatidylserine (PS), …

Black And Brown Carbon Optical Characterization In The El Paso - Ciudad Juarez Airshed, Pamela I. Lara

Open Access Theses & Dissertations

Black (EBC) and Brown (BrC) Carbon are ubiquitous constituents of atmospheric particulate matter that affect peopleâ??s health, disrupt ecosystems, and modulate local and global climate. Tracking the local deposition and sources of these aerosol particles is essential to better understanding their multidimensional environmental impact. The main goal of the current study is to measure the absorption coefficient (Babs) of particles within the Planetary Boundary Layer (PBL) of the El Paso (US)–Ciudad Juárez (Mexico) airshed and assess the contribution of black and brown carbon particles to the total optical absorption. Measurements were taken during winter (January, 2022), spring (May, 2022), and …

Insights On The Behavior Of Nano-Copper In The Agroecosystem: Mycorrhizal Associations With Spearmint (Mentha Spicata), Suzanne Annette Apodaca

Open Access Theses & Dissertations

Nanotechnology offers significant potential benefits to our society, including the agriculture sector. With the advancement of nano-enabled agrochemicals towards sustainable and efficient agricultural practices, it is essential to address environmental issues associated with the use of nanoscale materials. The same properties that give promise to applications of nanotechnology in modern agriculture could have unintended consequences on ecosystem dynamics. A point of concern for risk management is the impact of engineered nanomaterials (ENMs) to beneficial microbial communities, which support a variety of ecosystem services.

Use of copper (Cu) products in agriculture are based on their abundance, role as a micronutrient, and …

The Relationship Among Learners’ At-Risk Indicators And Ninth Grade Algebra I Achievement, Sara E. Tudon

Theses and Dissertations

The purpose of this research is to examine the relationship between at-risk indicators including socioeconomic status, English language learners (ELL), and gender to student performance in the Algebra I End of Course assessment. The research questions presented in the non-experimental quantitative research design were: (1) What is the impact of socioeconomic status on the Algebra I EOC exam? (2) What is the success rate of ninth grade students identified as English Language Learners (ELL) compared to non-identified ninth grade students in Algebra I? and (3) What is the difference in ninth grade Algebra I achievement between males and females? (4) …

Rheological Properties And Postharvest Behavior Of Onion (Allium Cepa L. 'Superex') Subjected To Different Preharvest Treatments To Control Armyworm [Spodoptera Exigua (Hubner Lepidoptera: Noctuidae], Daphne Cassandra Gonzales, Ryan Anthony Lualhati, Kim John Nate, Cielo Azul Dumlao, Emmanuel Amatorio, Elda Esguerra, Bonifacio Cayabyab

The Philippine Agricultural Scientist

Heavy reliance on synthetic pesticides has led to insecticide resistance of pests such as the onion armyworm, leading to the use of alternative strategies such as biopesticides. While studies on the efficacy of these biopesticides on pest control and yield exist, their subsequent effects on the quality and postharvest behavior of bulb onions during cold storage need to be determined. Allium cepa L. ‘Superex’ yellow type onion plants were subjected to preharvest treatments of microbial (NPV crude), botanical (neem oil), synthetic insecticide (chlorfenapyr), and Farmer’s Practice (control) for the control of onion armyworm (Spodoptera exigua (Hubner)). Bulbs were then …

Flowering Habit And Photoperiodic Flowering Response Of Stevia (Stevia Rebaudiana Bertoni) In The Philippines, Kennilyn May Balbin-De Luna, Bong Salazar

The Philippine Agricultural Scientist

Stevia is a perennial shrub commercially cultivated for the sweet-tasting compounds known as steviol glycosides (SVglys). SVglys are extracted from the green leaves, thus maintenance of vegetative growth is critical in stevia production. This study was conducted to describe the flowering habit and response of potted stevia plants to different photoperiods under Philippine conditions. Photoperiodic treatments (10, 11, 12, 13, and 14 h) were provided using light chambers. Stevia has both terminal and axillary flowering habits. It has five white florets enclosed in a capitulum and exhibits an opposite branching pattern. Results showed that stevia is a facultative short-day plant …

Determination Of Some Seed Characteristics Of False Flax (Camelina Sativa L. Crantz) Genotypes Grown Under Semi-Temperate Conditions, İlhan Subaşı, Yusuf Arslan, Tamer Eryigit, Vahdettin Çiftçi, Mahmut Çamlıca

The Philippine Agricultural Scientist

Camelina is an alternative low-input oil plant grown in marginal areas in Turkey. This study aimed to determine some quality characteristics of 39 camellia genotypes in ecological conditions in Bolu, Turkey. The field experiments were carried out in an augmented design with randomized blocks. In this work, some important properties such as thousand seed weight, oil content, fatty acid composition, and protein ratio were investigated. Results showed that mean data for thousand seed weight, oil ratio, and protein ratio were 0.63 – 1.5 g, 26.69 – 39.17%, and 21.81 – 29.81%, respectively. Considering the oil content of the genotypes used …

Sub-Acute Oral Toxicity Evaluation Of Philippine Bignay (Antidesma Bunius (L.) Spreng Cv. ‘Kalabaw’) Fruit In Icr Mice, Jonina Marie Tengco, Liezl Atienza, Maria Amelita Estacio, Mark Joseph Desamero, Roxanne Gapasin, Jonna Rose Maniwang, Katherine Ann Castillo-Israel, Rohani Navarro, Dianne Jane Sunico, James Ryan Aranzado, Ann Cayetano, Joan Delomen, Loraine Ancheta

The Philippine Agricultural Scientist

This study evaluated the safety of Bignay (Antidesma bunius (L.) Spreng cv. ‘Kalabaw’) fruits through a sub-acute oral toxicity test in male and female ICR mice. The evaluation was done through oral gavage of the aqueous fruit sample at 2,000 mg kg^-1 body weight dose for 28 d. Results showed that there were no significant changes in feed and water intake of male and female ICR mice as compared to the control groups that received distilled water (p < 0.05). Blood chemistry and hematology values for all mice groups were comparable to the controls and published values. All mice groups also had appreciable body weight gain (10.89% – 21.69%) with zero morbidity and mortality. Lastly, the gross and microscopic examination of the brain, heart, lungs, GI tract, liver, spleen, and kidneys showed normal architecture and histology, suggesting that the fruits did not induce any morphological abnormalities. Results of this study showed that Bignay (cv. ‘Kalabaw’) fruits are safe for consumption with an LD₅₀ of greater than 2,000 mg kg^-1 body weight.

Evaluation Of Triticale Lines Compared To Wheat Cultivars In Terms Of Agronomic Traits Using Supervised Learning Methods And Multivariate Statistics, Sara Farokhzadeh, Hossein Shahsavand Hassani

The Philippine Agricultural Scientist

The first man-made cereal grain triticale merges the yield and quality potential of wheat with tolerance of rye against environmental stresses. To find the traits with the greatest impact on the superiority of triticale over wheat, four promising triticale lines and six bread wheat varieties were evaluated in a randomized complete block design (RCBD) with three replications in the field of the Agricultural Research Station of Shiraz University, Iran. Attribute weighting algorithms revealed main leaf width (MLW), grain number per spike (GN/S), spikelet number per spike (SN/S), 1000-grain weight (TGW), plant height (PHT), main leaf length (MLL), and grain yield …

Micropropagation Of Grammatophyllum Multiflorum Var. 'Tigrinum' Lindley And Evaluation Of Its Antimicrobial Activities, Eufrocinio Marfori

The Philippine Agricultural Scientist

Grammatophyllum multiflorum var. ‘tigrinum’ Lindley is an endangered orchid species endemic to the Philippines. To ensure its sustainable utilization as a source of phytochemicals, the types and concentrations of cytokinin, and auxin for shoot and root induction using nodal explants from in vitro germinated seedlings for its mass propagation were established. Seeds were germinated in vitro using MS medium without growth regulator. The nodal explants from the in vitro germinated seedlings were placed in MS medium containing different cytokinins and auxins to optimize multiple shoots and root formation, respectively. Thidiazuron (TDZ) at 2.5 μM was found to be the best …

Reccurent Neural Network For The Detection Of Odontocetes, Christopher Michael Foster

Master's Theses and Capstones

This research project explores the ability of a Recurrent Neural Network to detect Odontocetecalls. With the current degree of climate change impacting the planet, being able to better track and locate highly mobile endangered species is imperative. An example of such a species is the Sperm Whale, which is listed as endangered under the United States Endangered Species Act, that migrate annually and have a range that extends through all the world’s oceans. Current methods of detection require a great deal of manual interaction and skill on behalf of the identifier. Automating this process would enable easier tracking and aid …

Increased Bundle-Sheath Leakiness Of Co2 During Photosynthetic Induction Shows A Lack Of Coordination Between The C4 And C3 Cycles, Yu Wang, Samantha S. Stutz, Carl J. Bernacchi, Ryan A. Boyd, Donald R. Ort, Stephen P. Long

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Use of a complete dynamic model of NADP-malic enzyme C4 photosynthesis indicated that, during transitions from dark or shade to high light, induction of the C4 pathway was more rapid than that of C3, resulting in a predicted transient increase in bundle-sheath CO2 leakiness (ϕ). Previously, ϕ has been measured at steady state; here we developed a new method, coupling a tunable diode laser absorption spectroscope with a gas-exchange system to track ϕ in sorghum and maize through the nonsteady-state condition of photosynthetic induction. In both species, ϕ showed a transient increase to > 0.35 before declining to a steady state …

Epidemic Time Series Similarity Is Related To Geographic Distance And Age Structure, Tad Dallas, Grant Foster, Robert L. Richards, Bret D. Elderd

Faculty Publications

Objective

More similar locations may have similar infectious disease dynamics. There is clear overlap in putative causes for epidemic similarity, such as geographic distance, age structure, and population size. We compare the effects of these potential drivers on epidemic similarity compared to a baseline assumption that differences in the basic reproductive number (R₀) will translate to differences in epidemic trajectories.

Methods

Using COVID-19 case counts from United States counties, we explore the importance of geographic distance, population size differences, and age structure dissimilarity on resulting epidemic similarity.

Results

We find clear effects of geographic space, age structure, …

Improved Pressure Loss And Multiphase Flow Behavior Predictions For In-Line Gas-Liquid Contactors Using Experimental Measurements And Cfd Simulations, Evan Lowry

Theses and Dissertations

Treatment of gas by liquid absorption is a common unit operation in industry. Traditionally, contact between the gas and liquid is accomplished in co-current flow utilizing a tower or column. With the increased demand for natural gas and renewable gas, higher treating capacities for new installations and methods for de-bottlenecking existing plants are needed. Co-current gas treating with static mixers is an increasingly attractive alternative for process intensification. The corrugated plate (SMV-style) mixer is currently the most widely used mixing element for gas-continuous mixing with a liquid phase and has been recommended as the best standard option for this service. …