Digital Commons Network^™

Methods For Inference And Analysis Of Gene Networks From Rna Sequencing Data, Himangi Srivastava

Theses and Dissertations

RNA (Ribonuceic Acid) sequencing technology is a powerful technology used to give re- searchers essential information about the functionality of genes. The transcriptomic study and downstream analysis highlight the functioning of the genes associated with a specific biological process/treatment. In practice, differentially expressed genes associated with a particular treatment or genotype are subjected to downstream analysis to find some critical set of genes. This critical set of genes/ genes pathways infers the effect of the treatment in a cell or tissue. This disserta- tion describes the multiple stages framework of finding these critical sets of genes using different analysis methodologies …

Uncertainty-Aware Deep Learning For Prediction Of Remaining Useful Life Of Mechanical Systems, Samuel J. Cornelius

Theses and Dissertations

Remaining useful life (RUL) prediction is a problem that researchers in the prognostics and health management (PHM) community have been studying for decades. Both physics-based and data-driven methods have been investigated, and in recent years, deep learning has gained significant attention. When sufficiently large and diverse datasets are available, deep neural networks can achieve state-of-the-art performance in RUL prediction for a variety of systems. However, for end users to trust the results of these models, especially as they are integrated into safety-critical systems, RUL prediction uncertainty must be captured. This work explores an approach for estimating both epistemic and heteroscedastic …

The Development Of Authentic Virtual Reality Scenarios To Measure Individuals’ Level Of Systems Thinking Skills And Learning Abilities, Vidanelage L. Dayarathna

Theses and Dissertations

This dissertation develops virtual reality modules to capture individuals’ learning abilities and systems thinking skills in dynamic environments. In the first chapter, an immersive queuing theory teaching module is developed using virtual reality technology. The objective of the study is to present systems engineering concepts in a more sophisticated environment and measure students learning abilities. Furthermore, the study explores the performance gaps between male and female students in manufacturing systems concepts. To investigate the gender biases toward the performance of developed VR module, three efficacy measures (simulation sickness questionnaire, systems usability scale, and presence questionnaire) and two effectiveness measures (NASA …

Bonded Or Broken? An Expansion Of Goodman And Gotlib’S Depressive Symptom Transmission Model Extended To Foster Parents And Grandparent Caregivers, Acacia Lopez

Theses and Dissertations

Current literature establishes a relationship between maternal depression and offspring depression. Goodman and Gotlib’s “Developmental Model for Understanding Mechanisms of Transmission” suggests possible mechanisms including attachment. Prior research also demonstrates a link between fathers’ depression and pediatric psychopathology risk, but further research is needed to elucidate the effect of other non-parental caregivers. Children raised by both types of non-parental caregivers are vulnerable to attachment disruptions due to separation from their parental caregivers and the prevalence of children residing with these caregivers is on the rise in recent years. Using the Goodman and Gotlib framework, this study examined the relation between …

Initial Characterization Of Prna From Burkholderia Ambifaria: Developing An Nadph-Dependent Activity Assay For Tryptophan Halogenation, Mahmuda Akter

Theses and Dissertations

Some bacteria produce a potent antifungal agent (pyrrolnitrin) from tryptophan using four dioxygen dependent steps to outcompete other microbes. Each step of this process is catalyzed by an oxygenase encoded by the prnABCD cassette. The first enzymatic step in pyrrolnitrin biosynthesis is the regioselective chlorination of tryptophan to form 7-chlorotryptophan. This halogenation is catalyzed by PrnA, a Flavin dependent oxygenase, which has been isolated and characterized from P. fluorescens. The pyrrolnitrin biosynthesis pathway (prnABCD) has been also observed in the Burkholderia genus. This thesis comprises my studies on the expression, purification, and characterization of PrnA from Burkholderia ambifaria. Beyond the …

Relationship Of Winter Hair Coat Shedding Ability Of Purebred Angus Dams With Mineral Status, Apparent Forage Digestibility, Uterine Artery Hemodynamics, And Calf Growth And Development, Randy Hunter Burnett

Theses and Dissertations

Winter hair coat shedding ability in southern U.S. cattle production has previously been associated with differences in adjusted birth and weaning weights of calves from dams that shed by June or later (Gray et al., 2011; Cauble et al., 2019). This study was developed to research possible avenues of why these relationships exist with winter hair coat shedding ability. The primary objectives of the following experiments were to: 1) evaluate how mineral status relates to winter hair coat shedding ability, 2) evaluate how winter hair coat shedding ability relates to apparent digestibility of forage, 3) evaluate winter hair coat shedding …

Examining Negative Thinking Styles And Thought Control Strategies Within Borderline Personality Disorder, Courtney K. Mason

Theses and Dissertations

Components of Borderline Personality Disorder (BPD) include emotion and cognitive dysregulation. The Emotional Cascade Model (Selby & Joiner, 2009; Selby et al., 2009) suggests negative affect and the cognitive process of rumination could be interchangeably increasing over time, leading to maladaptive behaviors. The current study evaluated negative thinking styles (i.e., anger rumination, sadness rumination, worry, catastrophizing) and thought control strategies (i.e., brooding, reflection, thought suppression) in relation to BPD traits using path analyses in a college student sample (N = 204). Results indicated anger rumination, sadness rumination, and worry indirectly predicted BPD traits through thought suppression, brooding, and reflection. However, …

The Effects Of Grazing Cover Crops On Animal Performance, Soil Characteristics, And Subsequent Soybean Production In East-Central Mississippi, Bronson Scott Bass

Theses and Dissertations

Integrated crop-livestock systems (ICLS) incorporate cropping systems and livestock production by grazing cover crops. With a growing awareness in recent years regarding agricultural sustainability, these systems have begun to be re-introduced into the southeastern U.S. This study evaluated cover cropping systems under grazed no-till (GNT), un-grazed no-till (UNT), and un-grazed conventional tillage (UCT) management, in Mississippi. Beef cattle (Bos spp.) performance was significantly less in the cover crop treatment of oats (Avena sativa) + crimson clover (Trifolium incarnatum) + radish (Raphanus sativus; OCR) in both average daily gain (ADG; 3.03 lb hd^{-1 …}

Characterization Of Small Molecules And Ions By Atmospheric Pressure Ionization-Mass Spectrometry, Maleesha De Silva

Theses and Dissertations

Mass spectrometry (MS) has become a widely used technique for the characterization of a wide range of substances in diverse fields. The selection of appropriate ionization techniques, source parameters, charge carriers based on the analyte’s polarity is essential in MS as only the ions are detected. When using a soft ionization technique, single stage-MS at best provides only chemical composition; thus, tandem MS is needed to determine structural information and dissociation pathways. This dissertation focuses on the characterization of various small molecules and ions using different ionization techniques, charge carriers, and collision-induced dissociation (CID).

In Chapter II, commercially available ionic …

Study Of Alloy And Process Modifications To Design Hydrogen Resilient High Hardness Steels, William R. Williams

Theses and Dissertations

High hardness steels (HHS) are vulnerable to hydrogen embrittlement, which can lead to rapid degradation of mechanical properties. Improved resistance to hydrogen embrittlement would be beneficial to many industries including construction, automotive, and military. A comparison study was performed to assess the hydrogen susceptibility of select commercially available and in-house designed HHS alloys. Slow strain rate tensile tests, performed with specimens charged with various levels of hydrogen, provided a macroscopic view of the onset of hydrogen embrittlement. Hydrogen permeation and thermal desorption spectroscopy tests determined the uptake and diffusivity of hydrogen through the material. The evaluation of hydrogen susceptibility for …

Evaluating The Effects Of Pine And Miscanthus Biochar On Water Activity And Escherichia Coli Populations In Commercial Broiler Litter, Christopher Austin Marty

Theses and Dissertations

The decrease in subtherapeutic antibiotic administration in poultry has increased the need to address production challenges caused by pathogens, such as E. coli. One potential way to improve bird health and reduce bacterial infection is through the addition of litter amendments that absorb moisture. Biochar (BC) has previously been shown to increase water holding capacity in poultry litter, but its effects on E. coli mitigation are unknown. The objectives of this research were to 1) evaluate water activity of poultry litter amended with pine and miscanthus BC, and 2) determine the effects of different BC inclusion rates on litter …

Development Of A Bioinspired Nugalbot For Precision Seeding Of Rice, Harsa Dhani

Theses and Dissertations

Many people around the world live in islands with mountainous lands. These people plant upland rice for their staple food. However, farming in these disadvantageous farms requires high input and gains low yield. One possible solution for improving productivity is by utilizing precision seeding. This study is focused on developing a robot for precision seeding of rice that is suitable for farming in rough terrain. A bioinspired human arm robot for picking seeds and making a hole on the ground was developed in accordance with Aalborg method for bioinspired design. Development of a mobile platform to carry the robot arm …

Testing Of Methods For Reducing Motivational Bias In Multi - Criteria Decision Analysis Problems, Chadwick Samuel Kerr

Theses and Dissertations

The idea of multi-criteria decision making has been around for quite a while. All judgement tasks are potential points of bias introduction. Each judgement task was assessed to identify common biases introduced through an extensive literature review for each task and bias. In several other studies, the distinction is made between cognitive and motivational biases. Cognitive biases are widely studied and well known with mitigations that have been validated. Motivational biases are judgements influenced by the decision maker’s desire for a specific outcome, also referred to as intentional bias, that are hard to correct and received very little testing and …

The Effects Of Cover Crops In An Integrated Livestock/Continuous Corn Cropping System In East-Central Mississippi, Ken Randolph Waddell

Theses and Dissertations

There is growing interest within the agricultural industry on how cover crop systems affect soil health and economic productivity in integrated crop-livestock systems. This study investigated the combined effects of cover crop species; no-till and conventional till; and grazed (G) and un-grazed (UG) in a continuous corn (Zea mays) production system in east-central Mississippi. Cover crops were established in the fall of 2019 and 2020 in two separate field studies. Corn yield was not affected by grazing or tillage but was affected by cover crop species. We then compared the difference in cover crop species treatments with their respective corn …

Design Of Plastic Contaminant Eliminator In Seed Cotton, Joshua H. Tandio

Theses and Dissertations

Plastic contamination in cotton is a problem in cotton industry and researchers have worked on this problem with different approaches. This thesis documents the design of mechanical and electronic real-time systems for detecting and removing plastic contaminants. The mechanical system was designed to expose plastic embedded inside the seed cotton to the sensor and to separate plastic contaminated cotton from the process stream. The detection system consisted of an embedded computer interfaced with a USB camera and Neural Network (NN) software running in it. Two NN models were tested, a transfer learning model and a built-from-scratch original model. The original …

Identity Formation Of Black Surinamese Dutch Women, Ashley Melcherts

Theses and Dissertations

This qualitative study explores the self-identification of young Black Surinamese Dutch women in the racialized context of Dutch society, how family and school contribute to identity formation, and how identity shapes the everyday lives of young women of color in predominantly white institutions in the Netherlands. Eight online in-depth interviews were conducted with Black Surinamese Dutch college women in the Netherlands about how they understand their identities, how they perceive the process of learning about their identities, and how their identities shape their everyday experiences in Dutch society. Findings illustrate the influence of family in shaping ideas about identity, the …

Virtual Reality And Postural Control: The Virtual Moving Room Paradigm, Hannah R. Freeman

Theses and Dissertations

Virtual reality (VR) is becoming increasingly important in balance training. However, the influence of VR generated visual perturbation, through the novel virtual moving room paradigm, is unknown. Thirty healthy individuals had their static balance assessed on a BTrackS balance plate under eight different conditions: baseline eyes open and eyes closed with and without VR, unexpected toward and away moving VR perturbation, and expected toward and away moving VR perturbation. Multiple statistical analyses were conducted, and the results revealed significantly higher postural sway variables in the unexpected moving toward trials compared to the other moving room conditions; significantly higher postural sway …

Systematics And Population Structure Of Amblyomma Maculatum Group Ticks And Rickettsia Parkeri, An Emerging Human Pathogen In Southern Arizona, Usa, Michelle E. J. Allerdice

Theses and Dissertations

The recent discovery of Amblyomma maculatum sensu lato (s. l.) ticks in southern Arizona has renewed discussions around species designations for members of the Amblyomma maculatum tick group. Amblyomma maculatum s. l. from Arizona appear to be morphologically intermediate between A. maculatum sensu stricto (s. s.) and A. triste s. s. At present there is no conclusive species designation for the ticks from Arizona. My research focused on analyzing the systematics of both A. maculatum s. l. and Rickettsia parkeri, a common bacterial pathogen transmitted by these ticks.

In the laboratory, A. maculatum s. l. from Arizona and A. maculatum …

Evaluation Of Alternate Wetting And Drying Irrigation Management In Rice, Richard Lee Atwill Ii

Theses and Dissertations

Water level declines in the Mississippi River Valley Alluvial Aquifer (MRVAA) are attributed largely to withdrawals for rice (Oryza sativa L.) irrigation. This study was performed to determine if alternative irrigation strategies for rice could reduce withdrawal from the MRVAA without having an adverse effect on grain yield, grain quality, control of barnyardgrass, and profitability. Research was conducted in Stoneville, MS and 19 on-farm locations across the Delta region of Mississippi from 2014 through 2017 to determine the irrigation threshold for alternate wetting and drying (AWD) rice irrigation, the effect of AWD management on barnyardgrass control, and effects of …

Mitigation Of Herbicide Resistance Development Among Weed Species In Cotton And Peanut, Justin S. Calhoun

Theses and Dissertations

Herbicide resistance development among weed populations in cotton and peanut is becoming increasingly difficult to manage. If resistant populations continue to persist, weed control practices for producers will become less efficient and more costly. The objective of this research was to evaluate alternative weed control techniques designed to mitigate herbicide resistance development for their agronomic and economic impact on weed management systems. Studies were conducted in 2019, 2020, and 2021 at multiple locations in Mississippi and Arkansas investigating multiple techniques including the addition of soil surfactants in herbicide tank mixtures, increasing SOAs utilized in peanut herbicide programs, applying non-labeled herbicides …

Feasibility Of Delivering Fall Prevention Intervention For People With Intellectual Disability In Group-Homes, Poram Choi

Theses and Dissertations

Adults with intellectual disability (ID) have a higher rate of falls than the general population, and changing health behaviors through exercise program could enhance health and reduce falls in this population. However, the feasibility study of fall prevention based on the theoretical framework for adults with ID has not been explored to date. This study examined the feasibility of a home-based exercise intervention for people with ID living in a residential setting. We provided an 8 week intervention consisting of a training workshop for support workers and sessions for adults with ID devoted to behavior reward, education about fall prevention …

Soybean (Glycine Max) Response To Multiple, Sublethal Exposures Of 2,4-D And Dicamba From Vegetative Through Reproductive Growth, Graham Robert Oakley

Theses and Dissertations

This study was conducted to determine whether soybean productivity is affected by multiple, sublethal herbicide exposures. The effects of dicamba and 2,4-D on soybean (Glycine max) productivity was investigated at 17 site-years. Relative to a single exposure of dicamba at R1, an additional exposure at either V3 or R3 reduced yield up to 23%. Three or more applications did not further decrease yields relative to an R1&R3 exposure. For 2,4-D, a single application to V3, R1, R3, or R5 soybean did not affect grain yield. However, two exposures of 2,4-D occurring from V3 through R3 reduced yield 5 to 7%. …

The Efficacy Of The Low-Fodmap Diet To Alleviate Symptoms Of Irritable Bowel Syndrome In Adults: A Systematic Review, Jacqueline Nicole Rustom

Theses and Dissertations

Irritable bowel syndrome (IBS) is a functional bowel disorder with 6.5% worldwide prevalence that causes gas production, abdominal distension, and abdominal pain or discomfort. This systematic review describes efficacy of the Low-Fermentable Oligosaccharides, Disaccharides, Monosaccharides And Polyols (FODMAP) diet (Low-FODMAP diet or LFD) to alleviate IBS symptoms using the PRISMA guidelines. Nine randomized controlled trials (RCT) and one non-RCT consecutive controlled study published between 2015 to 2019 were identified using PubMed and CENTRAL. Included studies involved adult IBS participants with symptoms of abdominal pain, constipation, and/or diarrhea. A total of 530 participants completed the interventions from the 10 studies included …

Examining The Need For Parental Satisfaction With The Msu Extension Equine Assisted Therapy Program, Ashlyn Ann Kiker

Theses and Dissertations

Animal assisted interventions are becoming more prevalent in our society. Animal interventions have become a popular therapy technique that exist to aid a variety of disabilities. Equine therapeutic riding has become one of the most popular forms of animal assisted therapy for both children and adults. While research shows the importance and benefits of animal assisted therapy for children, there is a lack of research concerning parental satisfaction within therapeutic riding programs.

This study tested a newly developed instrument for measuring parental satisfaction for therapeutic riding programs. The Parent/Caregiver Evaluation Tool (Kerr, 2021) was administered to parents/caregivers whose children participated …

The Art Of Amphibian Conservation: Linking In-Situ And Ex-Situ Populations Of Endangered Species Through Genome Banking, Isabella Joann Burger

Theses and Dissertations

Limited breeding success in captive breeding programs has necessitated the development of assisted reproductive technologies (ART) to preserve and increase genetic variation and population numbers of both captive and wild amphibian groups. ART has been shown to be successful in numerous anuran species, and current studies focus on the application of ART in ex-situ populations. The focus of this project is to show that linking in-situ and ex-situ amphibian populations through sperm cryopreservation, genome banking, and in-vitro fertilization is possible, with the goal of increasing gene diversity throughout groups in order to produce self-sustaining, wild populations in the future. Specific …

Urban-Rural Differences In Lifespan Variation In The United States, Benjamin H. Walker

Theses and Dissertations

Since the mid-1980s, mortality rate improvements in urban areas have outpaced those in rural areas, leading to substantial urban-rural disparities in mortality. Research on urban-rural mortality disparities has focused exclusively on differences in mortality between urban and rural areas and has not examined differences in the amount of inequality in the length of life within these areas. Lifespan variation is an important dimension of health inequality that complements traditional metrics of mortality (i.e., mortality rates and life expectancy) by indicating the amount of inequality of lifespans within a population. This dissertation provides several contributions to our understanding of urban-rural differences …

The Development Of An Immersive Virtual Exploratory Engine (Ivee) For Immersive Analytics, Sofia Karam

Theses and Dissertations

Due to increasing data complexity, researchers are struggling to visually explore data using traditional methods. Research has shown that a variety of analytics-related tasks can be enhanced using new emerging technologies (e.g., virtual reality [VR] and augmented reality [AR]). This paper provides a detailed design approach for developing an immersive virtual engine system for conducting exploratory and descriptive data analytics. This system is called the Immersive Virtual Exploratory Engine (IVEE), is a VR system that allows users to experience full intractability with its graphical elements and examines various datasets within the same immersive environment. Basic plots—such as histograms, line plots, …

Impacts Of Sea-Level Rise On Urban Properties In Tampa Due To Climate Change, Weiwei Xie

Theses and Dissertations

The fast urbanization produces a large and growing population in coastal areas. However, the rise of sea level, one of the most significant impacts of global warming, makes coastal communities much more vulnerable to flooding than before. This Master’s thesis study investigates sea-level rise impacts on parcel-level property in the specific coastal city of Tampa, Florida, USA. An improved sea-level rise model based on satellite altimeter data is first used to predict future sea levels. Based on high-resolution LiDAR digital elevation data and property map, flooded properties are identified to evaluate property damage cost. This empirical analysis provides an in-depth …

Detecting Malware In Memory With Memory Object Relationships, Demarcus M. Thomas Sr.

Theses and Dissertations

Malware is a growing concern that not only affects large businesses but the basic consumer as well. As a result, there is a need to develop tools that can identify the malicious activities of malware authors. A useful technique to achieve this is memory forensics. Memory forensics is the study of volatile data and its structures in Random Access Memory (RAM). It can be utilized to pinpoint what actions have occurred on a computer system.

This dissertation utilizes memory forensics to extract relationships between objects and supervised machine learning as a novel method for identifying malicious processes in a system …

Verification Of Acoustic Dissipation In Two-Phase Dilute Dispersed Flow Models In Computational Fluid Dynamics, Brennan Reeder

Theses and Dissertations

With existing numerical models for fluid particle systems in CHEM, the acoustic-particle interactions associated with two-phase dilute dispersed flow can be captured and the particle model can be validated using experimental and analytical data and verified using numerical techniques. The experimental and analytical data come from Zink and Delsasso and provides data for particles of diameters 5 to 15 microns for frequencies between 500Hz to 13600Hz. In the particle number density measurements by Zink and Delsasso there was a 10% estimated error range. Using the fourth order skew symmetric flux in CHEM and the built in Eulerian and Lagrangian particle …