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Ua.Fa_Charles H. Mcnutt Papers Finding Aid

Special Collections Finding Aids

The collection is comprised of research materials, class lecture notes, documents related to archaeological projects, and historic materials related to the University of Memphis administration and student life. The collection details archaeological projects related to the Southeastern United States, and includes material related to Native American Graves Protection and Repatriation Act (NAGPRA). While most of the collection will focus on the career of Dr. McNutt, there are some materials related to his education in Anthropology.

Red Drum And Spotted Seatrout Live-Release Tournament Mortality And Dispersal, T. Reid Nelson, Crystal Hightower, Sean P. Powers

University Faculty and Staff Publications

Although catch-and-release fishing tournaments undoubtedly reduce mortality of target species, postrelease mortality and fish stockpiling at release sites remain common concerns related to these tournaments. The impacts of liverelease tournaments on freshwater species have been widely studied. However, research on estuarine sport fishes is lacking even though catch-and-release tournaments targeting these species are prevalent and popular recreational fisheries exist. Therefore, we estimated the post-weigh-in mortality and dispersal of Red Drum Sciaenops ocellatus and Spotted Seatrout Cynoscion nebulosus released from the 2016–2018 Alabama Deep Sea Fishing Rodeo live-weigh-in categories using acoustic telemetry. To concurrently estimate overall post-weigh-in mortality and dispersal, we …

Documentation Of Atlantic Tarpon (Megalops Atlanticus) Space Use And Move Persistence In The Northern Gulf Of Mexico Facilitated By Angler Advocates, J. Marcus Drymon, Matthew B. Jargowsky, Michael A. Dance, Mitchell Lovell, Crystal L. Hightower, Amanda E. Jefferson, Andrea M. Kroetz, Sean P. Powers

University Faculty and Staff Publications

Atlantic tarpon (Megalops atlanticus, hereafter tarpon) are facing a multitude of stressors and are considered Vulnerable by the IUCN; however, significant gaps remain in our understanding of tarpon space use and movement. From 2018 to 2019, citizen scientists facilitated tagging of 23 tarpon with SPOT tags to examine space use and movement across the northern Gulf of Mexico. Movement-based kernel densities were used to estimate simplified biased random bridge-based utilization distributions and a joint move persistence model was used to estimate a behavioral index for each fish. Tarpon showed consistent east–west movement from the Alabama/Florida border to Louisiana, and utilization …

Front Matter

SMU Law Review

No abstract provided.

No Name, Lawrence M. Friedman

SMU Law Review

No abstract provided.

The Fate Of Intercountry Adoptions Following Covid-19, Ambrosia Wilkerson

The International Lawyer

No abstract provided.

Eu-Acp Economic Partnership Agreements After Brexit: The (Neglected) Case Of Legitimate Expectations And Fundamental Change Of Circumstances, Regis Y. Simo

The International Lawyer

No abstract provided.

From Protecting Water Quality To Protecting States’ Rights: Fifty Years Of Supreme Court Clean Water Act Statutory Interpretation, Stephen Johnson

SMU Law Review

In 1972, a bipartisan Congress enacted the Clean Water Act “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” Almost fifty years have passed since Congress enacted the law, and during that time, the Supreme Court has played a significant role in the administration and evolution of the law. Since the dawn of the environmental era in the 1970s, the Supreme Court has heard more cases involving the Clean Water Act than any other environmental law. However, the manner in which the Court has analyzed the law has changed substantially over the last half century. …

The Constitutional Basis For Inmate Gender Confirmation Surgery, Bryce Couch

SMU Law Review

Transgender refers to “people whose gender identity, gender expression, or behavior does not conform to what is socioculturally accepted as, and typically associated with, the legal and medical sex to which they were assigned at birth.” Despite representing a small percentage of the U.S. population (0.58%), the transgender community is disproportionately represented in the prison system. Studies suggest that one-in-six transgender people (16%) have been incarcerated in their lifetime, compared to 2.8%–6.6% of the general U.S. population. In total, transgender individuals comprise 0.24% of the U.S. prison and jail population.

Unfortunately, research indicates that the prison system is “ill-prepared to …

“Just Give Us A Chance”: Supports And Challenges To Maintaining Employment As Experienced By People Who Have Been In Prison, Amy Moore

Theses and Dissertations (Comprehensive)

People who have been in prison tend to struggle to find meaningful employment (Opsal, 2012). While research delves into the topic of how criminalized people attain employment (Ricciardelli & Mooney, 2017; Anazodo et al., 2017), there is little known about their experiences maintaining employment. Therefore, the objective of this study is to identify the supports and challenges to maintaining employment after release from a Canadian women’s federal prison.

Following Research Ethics Board (REB) approval, semi-structured interviews lasting up to 90 minutes were completed with each of six participants. Participants included two Indigenous women, three White women, and one White transgender …

A Comprehensive Review On Genetic Diversity And Phylogenetic Relationships Amongnative Turkish Cattle Breeds Based On Microsatellite Markers, Eymen Demi̇r, Taki̇ Karsli, Murat Soner Balcioğlu

Turkish Journal of Veterinary & Animal Sciences

Many local breeds belonging to different livestock species such as cattle are in danger of extinction, since farmers prefer high-yielding breeds as well as intensive selection pressure. This fact leads to conduct suitable breeding and conservation programs in worldwide. Revealing genetic diversity is the first step for applying breeding and conservation programs. In this respect, this is the first comprehensive study aimed to review current genetic diversity and phylogenetic relationships among native Turkish cattle breeds based on previous microsatellite marker studies. Compared to other local cattle breeds reared in different regions of the world, native Turkish cattle breeds hold a …

Pelvic Limb Thermography In Dogs Submitted To Different Thermotherapy Modalities, Samyla Paiva De Albuquerque, Orimacelio Da Costa Martins, Ariel De Aguiar, Lorena Oliveira Silva, Acácio Duarte Pacheco, Lourdes Marina Bezerra Pessoa, Luís Eduardo Maggi, Soraia Figueiredo De Souza

Turkish Journal of Veterinary & Animal Sciences

Veterinary physiatry is an area in need of further studies and a discipline in which the protocols used in the veterinary clinical routine are often extrapolated from studies in medicine. This study aimed to evaluate the effectiveness of different types of thermotherapy and massage, through thermography, in promoting heating or cooling in the pelvic limb of healthy dogs. Five healthy adult dogs (male and female) of different breeds were subjected to 5 treatments: G1: massage without oil; G2: oil massage; G3: heating with a thermal bag at 43 ± 1 °C; G4: cryotherapy with ice pack; and G5: therapeutic ultrasound. …

Effect Of Eggshell Temperatures On Hatching Performance, Egg Production, And Bonemorphology Of Laying Hens, Serdar Kamanli, Zi̇şan Servet Yalçin, Ahmet Nuri̇ Taşdemi̇r, Bülent Tarim, Engi̇n Tülek, Hüseyi̇n Aygören, Öğünç Meral, Bi̇rkan Karsli, Tansel Ansal Balci, Mehmet Bozkurt

Turkish Journal of Veterinary & Animal Sciences

The present study aims to evaluate the effect of lower or higher eggshell temperatures from days 7 to 21 on hatching performance, bone and blood parameters, and egg production along with the age of laying chickens. A total of 3150 eggs obtained from a white egg-type breeder were divided randomly into 3 groups of 1050 eggs. From 7 to 21 days, eggs were incubated at one of three eggshell temperatures: Control (IC) 37.5 °C, low (IL) 36.9 °C, and high (IH) 38.5 °C. At hatch, chicks were weighed, and blood was collected to measure total Ca, inorganic P, and ALP …

The Curative Effects Of Dietary Yeast Beta-1,3/1,6-Glucan On Oxidative Stress And Apoptosis In Laying Quails (Coturnix Coturnix Japonica) Exposed To Lead, İsmai̇l Seven, Pinar Tatli Seven, Seda İflazoğlu Mutlu, Gözde Arkali, Nurgül Bi̇rben, Aslihan Sur Arslan, Mesut Aksakal

Turkish Journal of Veterinary & Animal Sciences

The objective of this study was to investigate the effects of supplementation of beta-glucan to the basal diet of laying quails exposed to lead (Pb) toxicity. A total of 112 birds were randomly divided into 4 groups. The first group was fed a corn-soybean based basal diet without any supplementation (control). The second (Pb) and third (beta-glucan) groups were supplemented with 100 mg/kg of Pb (as Pb acetate) and 100 mg/kg of beta-glucan, respectively. The fourth group (Pb + beta-glucan) was fed a basal diet supplemented with 100 mg/kg of Pb and 100 mg/kg of beta-glucan. It was determined that …

Oviductal Cells Adhesion Test For Bull Semen Quality Assessment And Fertility Prediction Ofendangered Breeds: Proposal Of A Simplified Method, Calogero Stelletta, Koray Teki̇n, Beste Çi̇l, Juri Vencato, Giulia Gollin, Giancarlo Bertoli, Lucillo Cestaro, Stefano Romagnoli, Ali̇ Daşkin

Turkish Journal of Veterinary & Animal Sciences

Classical procedures for semen evaluation in breeding soundness examination require time and are costly. The evaluation techniques with CASA are limited due to the lack of standardization among laboratories and data analysis methods. Recent studies have contradictory conclusions on the actual predictive ability of this method alone regarding fertility. Finding a simple and objective test that can give the maximum correlation between in vitro and in vivo results has been the main focus of novel research. In this study, we aimed to develop a repeatable protocol of sperm adhesion test using oviductal explant (AOC) and the results were compared with …

The Prevalence Of Seven Crucial Honeybee Viruses Using Multiplex Rt-Pcr And Theirphylogenetic Analysis, Abdurrahman Anil Çağirgan, Zafer Yazici

Turkish Journal of Veterinary & Animal Sciences

Honey bee viruses may be of severe adverse effect on bee colonies. Till now, more than twenty honey bee viruses have been identified. The aim of this study was to investigate the prevalence of seven honey bee viruses, namely Israeli acute paralysis virus (IAPV), deformed wing virus (DWV), sacbrood virus (SBV), acute bee paralysis virus (ABPV), black queen cell virus (BQCV), Kashmir bee virus (KBV), and chronic bee paralysis virus (CBPV) using a multiplex reverse transcription polymerase chain reaction (mRT-PCR). A total of 111 apiaries were randomly selected and adult bees and larvae samples were obtained from seemingly healthy colonies …

The Effect Of Ellagic Acid On Performance, Digestibility, Egg Quality, Cecal Bacterial Flora,Antioxidant Activity, And Some Blood Parameters In Laying Quails Reared At Differenttemperatures, Seda İflazoğlu Mutlu, Talat Güler

Turkish Journal of Veterinary & Animal Sciences

In this study, the effect of ellagic acid on the performance, egg quality, digestibility, cecal microflora, serum malondialdehyde (MDA) level, and biochemical parameters in quails reared under normal conditions and at high environmental temperatures was investigated. The animals (n = 240; 5-weeks old) reared at 2 environmental temperatures [thermoneutral (TN) and heat stress (HS)] and in 4 diet groups containing different ellagic acid doses (0, 100, 200, and 400 mg/kg) were randomly assigned to 8 groups according to the 2 × 4 factorial design. Feed intake, egg weight, and egg production were higher (P < 0.001) and feed conversion (P < 0.01) was better in the TN groups compared to the HS groups. Egg (P < 0.01) and shell weights (P < 0.001) were higher in the TN groups compared to the HS groups. The effect of ellagic acid supplementation on shell weight was statistically significant in the TN and HS groups (P < 0.05). The effects of environmental temperature and the supplementation of ellagic acid on digestibility of dry matter (P < 0.05), ether extract (P < 0.01), and crude protein (P < 0.01) were statistically significant in the TN and HS groups. Supplementation of ellagic acid reduced the total coliform bacteria count (P < 0.01) and increased the total lactic acid bacteria count (P < 0.001) in the cecum. Serum MDA levels increased with heat stress (P < 0.001) and decreased with the supplementation of ellagic acid (P < 0.001). The effect of environmental temperature on serum glucose (P < 0.001), cholesterol (P < 0.05), total protein (P < 0.05), alanine aminotransferase (ALT) (P < 0.001), sodium (P < 0.05), and magnesium was significant. In conclusion, the supplementation of ellagic acid decreased oxidative stress and total coliform bacteria count and improved the feed conversion and egg quality in quails under heat stress. Moreover, ellagic acid increased the digestibility of nutrients and had a positive effect on lactic acid bacteria. It was observed in this study that these beneficial effects of ellagic acid increased with an increasing dose, and 400 mg/kg was the most effective dose.

Mortality In Some Domesticated Pigeons (Columba Livia) From Jammu, India, Syed Mehmood, Nawab Nashiruddullah, Jafrin Ara Ahmed

Turkish Journal of Veterinary & Animal Sciences

Although pigeons are reared for recreational purposes in Jammu region, disease occurrence is sparsely documented. Based on clinical signs, lesions and laboratory investigation, approximately 600 out of 4000 (15%) domestic pigeons were found to be disease affected. Necropsy of 60 birds was conducted to determine the cause of death. Haemoproteus columbae demonstrated within erythrocytes and various development stages in tissue and endothelial schizogony caused majority deaths due to pneumonia and hepatitis (45%) accompanied by severe vascular and tissue reaction. Newcastle disease (20%) confirmed by positive serum haemagglutination inhibition manifested in a severe neurological form with characteristic cerebral malacia and demyelination. …

Effect Of Light Sources On Productivity, Welfare Aspects, And Economic Evaluation Ofcommercial Layers, Fazal Raziq, Jibran Hussain, Athar Mahmud, Khalid Javed

Turkish Journal of Veterinary & Animal Sciences

The present study was aimed to evaluate the influence of incandescent, fluorescent, and light emitting diode (LED) lights on the productive efficiency and economic aspects of laying hens. For this, 216 laying hens were distributed into three groups of light sources with six replicates each. Each replicate consisted of 12 birds. The data were analyzed in SAS 9.1 (SAS InstituteInc., Cary, NC, USA) by applying one-way ANOVA technique, and significant means were compared through least significant difference test. In the present study, LED light significantly improved the body weight, body weight gain, percentage of egg production, FCR per dozen and …

Investigation Of G1 (C.260g>A) Polymorphism In Exon 1 Of Gdf9 Gene In Turkish Sheepbreed Karayaka, Koray Kirikçi, Mehmet Aki̇f Çam, Levent Mercan

Turkish Journal of Veterinary & Animal Sciences

GDF9 is an essential gene for normal follicular development and prolificacy in sheep. The aim of this study was to determine the genetic polymorphism and G1 mutation of GDF9 gene exon 1 in 100 Karayaka ewes, belonging to four subpopulations in the Black Sea Region provinces of Turkey. Based on DNA sequence results, two alleles (A and G) and two genotypes (GG and GA) were determined with the restriction fragment length polymorphism analysis of PCR-amplified fragments (PCR-RFLP) method. The frequencies of mutant (A) and wild-type (G) alleles were detected as 0.10 and 0.90. The frequencies of GG and GA genotypes …

Efficacy Of Convalescent Plasma According To Blood Groups In Covid-19 Patients, Tuba Hacibeki̇roğlu, Yasi̇n Kalpakçi, Ahmed Ci̇had Genç, İlhan Hacibeki̇roğlu, Cenk Sunu, Adem Saricaoğlu, Yakup Tomak, Oğuz Karabay, Mehmet Köroğlu

Turkish Journal of Medical Sciences

Background/aim: In this study, we aim to investigate the efficacy of convalescent plasma (CP) according to blood groups (BGs) in the treatment of critically ill patients diagnosed with COVID-19. Materials and methods: Twenty-eight critically ill and laboratory-confirmed COVID-19 patients who were admitted to the intensive care unit (ICU) of Sakarya University, Medical Faculty were included in the study. Patients were divided into 2 groups: patients who received anti-A antibody (Ab) containing CP (BG O and B) and those who did not receive CP containing anti-A Ab (BG A and AB). Results: Among the 28 patients, 13 patients received anti-A Ab …

Projecting The Course Of Covid-19 In Turkey: A Probabilistic Modeling Approach, Aybar Can Acar, Ahmet Görkem Er, Hüseyi̇n Cahi̇t Burduroğlu, Seher Nur Sülkü, Yeşi̇m Aydin Son, Levent Akin, Serhat Ünal

Turkish Journal of Medical Sciences

Background/aim: The COVID-19 pandemic originated in Wuhan, China, in December 2019 and became one of the worst global health crises ever. While struggling with the unknown nature of this novel coronavirus, many researchers and groups attempted to project the progress of the pandemic using empirical or mechanistic models, each one having its drawbacks. The first confirmed cases were announced early in March, and since then, serious containment measures have taken place in Turkey. Materials and methods: Here, we present a different approach, a Bayesian negative binomial multilevel model with mixed effects, for the projection of the COVID-19 pandemic and we …

Prognostic Factors For 30-Days Mortality In Eighty Years Aged And Older Critically Illpatients: A Single Center Retrospective Cohort Study, Umut Sabri̇ Kasapoğlu, Osman Kaçmaz, Abdullah Gök, Meri̇h Yildiz Eglen, Hasan Şayan, Fati̇h Çolak

Turkish Journal of Medical Sciences

Background/aim: Nowadays, with the rise in average life expectancy, the rate of hospitalization of the older population in intensive care unit (ICU) is gradually increasing. Unfortunately, there are no ideal combination of prognostic factors predicting the mortality in older patients admitted to the ICU. In the present study, we aim to determine the prognostic factors and their impacts on short-time mortality in older critically ill patients. Materials and methods: This retrospective cohort study was performed between January 2019 and February 2020. We included 133 patients aged ≥80 years and hospitalized ≥24 h in the ICU. Results: A total of 133 …

Analysis Of Subtelomeric Rextal Assemblies Using Quast, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman

Computer Science Faculty Publications

Genomic regions of high segmental duplication content and/or structural variation have led to gaps and misassemblies in the human reference sequence, and are refractory to assembly from whole-genome short-read datasets. Human subtelomere regions are highly enriched in both segmental duplication content and structural variations, and as a consequence are both impossible to assemble accurately and highly variable from individual to individual. Recently, we developed a pipeline for improved region-specific assembly called Regional Extension of Assemblies Using Linked-Reads (REXTAL). In this study, we evaluate REXTAL and genome-wide assembly (Supernova) approaches on 10X Genomics linked-reads data sets partitioned and barcoded using the …

Systematizing Confidence In Open Research And Evidence (Score), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, Et Al., Score Collaboration

Computer Science Faculty Publications

Assessing the credibility of research claims is a central, continuous, and laborious part of the scientific process. Credibility assessment strategies range from expert judgment to aggregating existing evidence to systematic replication efforts. Such assessments can require substantial time and effort. Research progress could be accelerated if there were rapid, scalable, accurate credibility indicators to guide attention and resource allocation for further assessment. The SCORE program is creating and validating algorithms to provide confidence scores for research claims at scale. To investigate the viability of scalable tools, teams are creating: a database of claims from papers in the social and behavioral …

Automated Filtering Of Eye Movements Using Dynamic Aoi In Multiple Granularity Levels, Gavindya Jayawardena, Sampath Jayarathna

Computer Science Faculty Publications

Eye-tracking experiments involve areas of interest (AOIs) for the analysis of eye gaze data. While there are tools to delineate AOIs to extract eye movement data, they may require users to manually draw boundaries of AOIs on eye tracking stimuli or use markers to define AOIs. This paper introduces two novel techniques to dynamically filter eye movement data from AOIs for the analysis of eye metrics from multiple levels of granularity. The authors incorporate pre-trained object detectors and object instance segmentation models for offline detection of dynamic AOIs in video streams. This research presents the implementation and evaluation of object …

A Tool For Segmentation Of Secondary Structures In 3d Cryo-Em Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, Jing He

Computer Science Faculty Publications

Although cryo-electron microscopy (cryo-EM) has been successfully used to derive atomic structures for many proteins, it is still challenging to derive atomic structures when the resolution of cryo-EM density maps is in the medium resolution range, such as 5–10 Å. Detection of protein secondary structures, such as helices and β-sheets, from cryo-EM density maps provides constraints for deriving atomic structures from such maps. As more deep learning methodologies are being developed for solving various molecular problems, effective tools are needed for users to access them. We have developed an effective software bundle, DeepSSETracer, for the detection of protein secondary structure …

Cellular Iron Storage And Trafficking Are Affected By Gtn Stimulation In Primary Glial And Meningeal Cell Culture, Lati̇fe Arzu Aral, Mehmet Ali̇ Ergün, Hayrunni̇sa Bolay Belen

Turkish Journal of Biology

A well-balanced intracellular iron trafficking in glial cells plays a role in homeostatic processes. Elevated intracellular iron triggers oxidative stress and cell damage in many neurological disorders, including migraine. This study aimed to investigate the effects of glyceryl trinitrate (GTN), on cellular iron homeostasis, matrixmetalloproteinase (MMP)-9, and calcitonin gene related peptide (CGRP) receptor (CRLR/CGRPR1) production in microglia, astrocyte, and meningeal cell cultures. Primary glial and meningeal cells in culture were exposed to GTN for 24 h. Messenger RNA expression was assessed using qPCR. Iron accumulation was visualized via modified Perl?s histochemistry. MMP-9 levels in cell culture supernatants were measured using …

Expression Profiles Of Interferon-Related Genes In Cells Infected With Influenza A Viruses Or Transiently Transfected With Plasmids Encoding Viral Rna Polymerase, Eli̇f Çağlayan, Kadi̇r Turan

Turkish Journal of Biology

Influenza A viruses frequently change their genetic characteristics, which leads to the emergence of new viruses. Consequently, elucidation of the relationship between influenza A virus and host cells has a great importance to cope with viral infections. In this study, it was aimed to determine expression profiles of interferon response genes in human embryonic kidney 293 (HEK293) cells infected with human (A/WSN-H1N1) and avian influenza A viruses (duck/Pennsylvania/10218/84/H5N2) or transfected with plasmids encoding viral RdRP subunits and, to obtain clues about the genes that may be important for the viral pathogenesis. The HEK293 cells cultured in a 12-well plate were …

Current Mutatome Of Sars-Cov-2 In Turkey Reveals Mutations Of Interest, Doğa Eski̇er, Evren Akalp, Özlem Dalan, Gökhan Karakülah, Yavuz Oktay

Turkish Journal of Biology

As the underlying pathogen for the COVID-19 pandemic that has affected tens of millions of lives worldwide, SARS-CoV-2 and its mutations are among the most urgent research topics worldwide. Mutations in the virus genome can complicate attempts at accurate testing or developing a working treatment for the disease. Furthermore, because the virus uses its own proteins to replicate its genome, rather than host proteins, mutations in the replication proteins can have cascading effects on the mutation load of the virus genome. Due to the global, rapidly developing nature of the COVID-19 pandemic, local demographics of the virus can be difficult …