Digital Commons Network^™

Longitudinal Assessment Of The Bovine Ocular Bacterial Community Dynamics In Calves, Alison Bartenslager, Nirosh D. Aluthge, John Dustin Loy

Department of Animal Science: Faculty Publications

Background: Infectious Bovine Keratoconjunctivitis (IBK), commonly known as pinkeye, is one of the most significant diseases of beef cattle. As such, IBK costs the US beef industry at least 150 million annually. However, strategies to prevent IBK are limited, with most cases resulting in treatment with antibiotics once the disease has developed. Longitudinal studies evaluating establishment of the ocular microbiota may identify critical risk periods for IBK outbreaks or changes in the microbiota that may predispose animals to IBK.

Results: In an attempt to characterize the establishment and colonization patterns of the bovine ocular microbiota, we conducted a longitudinal study …

Prediction Of Alzheimer’S Disease-Specific Phospholipase C Gamma-1 Snv By Deep Learning-Based Approach For High-Throughput Screening, Sung Hyun Kim, Sumin Yang, Key Hwan Lim, Euiseng Ko, Hyun Jun Jang, Mingon Kang, Pann Ghill Suh, Jae Yeol Joo

Computer Science Faculty Research

© 2021 National Academy of Sciences. All rights reserved. Exon splicing triggered by unpredicted genetic mutation can cause translational variations in neurodegenerative disorders. In this study, we discover Alzheimer’s disease (AD)-specific single-nucleotide variants (SNVs) and abnormal exon splicing of phospholipase c gamma-1 (PLCγ1) gene, using genome-wide association study (GWAS) and a deep learning-based exon splicing prediction tool. GWAS revealed that the identified single-nucleotide variations were mainly distributed in the H3K27ac-enriched region of PLCγ1 gene body during brain development in an AD mouse model. A deep learning analysis, trained with human genome sequences, predicted 14 splicing sites in human PLCγ1 gene, …

Computational Study Of Helical And Helix-Hinge-Helix Conformations Of An Anti-Microbial Peptide In Solution By Molecular Dynamics And Vibrational Analysis, Faramarz Joodaki, Lenore M. Martin, Michael L. Greenfield

Chemical, Biomolecular, and Materials Engineering Faculty Publications

Many classical antimicrobial peptides adopt an amphipathic helical structure at a water-membrane interface. Prior studies led to the hypothesis that a hinge near the middle of a helical peptide plays an important role in facilitating peptide-membrane interactions.Here, dynamics and vibrations of a designed hybrid antimicrobial peptide LM7-2 in solution were simulated to investigate its hinge formation.Molecular dynamics simulation results on the basis of the CHARMM36 force field showed that the $\alpha$-helix LM7-2 bent around two or three residues near the middle of the peptide, stayed in a helix-hinge-helix conformation for a short period of time, and then returned to a …

Microplastic Abundance, Composition And Distribution On Selected Beaches, Seafloor And In Marine Animals Of Perhentian Islands, Terengganu, Lim Ying Wei

Student Works (2020-2029)

Small pieces of plastic with sizes less than 5mm is known as microplastic. Accidental intake of microplastic could disturb an organism’s digestive and hormone systems. Of all the landscapes, islands are especially vulnerable to microplastic pollution due to their distinctive geographical and meteorological characteristics. Perhentian Islands in Terengganu state of Peninsular Malaysia was chosen as the study site for microplastic research as it harbours diverse marine species and consistently receives high number of tourist arrival. This project studies microplastic abundance attached to beach and seafloor sediments, within Acropora spp. coral, and in randomly collected marine animal carcasses during both Southwest …

The Constitutional Status Of The Administrative State, Kate Glover Berger

All Papers

This paper considers the constitutional status of the administrative state. It argues that, after decades of growth in size, reach, and power, the administrative state can now be understood as an architectural feature of the Canadian constitution. To make this argument, the paper first provides an account of the concept of architecture in Canadian constitutional law and the analytical framework it offers for thinking through the status question. It then looks to developments in Canadian public law that shed light on the status of the administrative state. The analysis focuses on three such developments: the expansion of the role of …

Faculty Senate Executive Committee Agenda, January 19, 2021, Utah State University

Faculty Senate & Faculty Senate Executive Committee

• EPC Monthly Report
• PRPC Subcommittee 400 Code Rewrite
• Office of Research Annual Report
• School of Graduate Studies Annual Report
• USUSA Annual Report
• 404.3.6 Code Changes (second reading)

Article, Gulfport’S Capt. Barney Waterbury Wonders About The Future Of Florida’S Tree Canopy, January 19, 2021, Amanda Hagood

Creekshed: City Wilds

An article by Amanda Hagood about Barney Waterbury and tree climbing in St. Petersburg, Florida.

Scalable Fabrication Of Post-Drawn Bio-Based And Petroleum-Based Nanofibers With Tunable Fiber Alignment, Morphology, And Mechanical Properties Via An Automated Track Approach, Dave Jao

Theses and Dissertations

We propose to expand nanomanufacturing capabilities and develop processing methods to produce advanced nanofiber materials with enhanced macromolecular and functional properties. Over the past decade, there has been a tremendous increase in the demand for polymeric nanofibers, which are promising candidates for a wide range of technological applications, including tissue engineering, protective clothing, filtration/absorption materials, and sensors/electronic devices, batteries/energy harvest, and fiber-reinforced composites [1]. However, the accessibility of nanofiber materials is limited because it is impossible to produce polymer nanofibers using conventional techniques. Typically, conventional polymer fibers are manufactured by mechanical extrusion with a secondary post-drawing step that stretches the …

Self-Administered Behavioral Skills-Based At-Home Virtual Reality Therapy For Chronic Low Back Pain: Protocol For A Randomized Controlled Trial., Laura Garcia, Beth Darnall, Parthasarathy Krishnamurthy, Ian Mackey, Josh Sackman, Robert Louis, Todd Maddox, Brandon Birckhead

Articles, Abstracts, and Reports

BACKGROUND: Chronic pain is one of the most common and debilitating health conditions. Treatments for chronic low back pain typically focus on biomedical treatment approaches. While psychosocial treatments exist, multiple barriers prevent broad access. There is a significant unmet need for integrative, easily accessible, non-opioid solutions for chronic pain. Virtual reality (VR) is an immersive technology allowing innovation in the delivery of behavioral pain treatments. Behavioral skills-based VR is effective at facilitating pain management and reducing pain-related concerns. Continued research on these emerging approaches is needed.

OBJECTIVE: In this randomized controlled trial, we seek to test the efficacy of a …

Temperature But Not Ocean Acidification Affects Energy Metabolism And Enzyme Activities In The Blue Mussel, Mytilus Edulis, Omera B. Matoo, Gisela Lannig, Christian Bock, Inna M. Sokolova

School of Biological Sciences: Faculty Publications

1. In mosaic marine habitats, such as intertidal zones, ocean acidification (OA) is exacerbated by high variability of pH, temperature, and biological CO2 production. The nonlinear interactions among these drivers can be context-specific and their effect on organisms in these habitats remains largely unknown, warranting further investigation. 2. We were particularly interested in Mytilus edulis (the blue mussel) from intertidal zones of the Gulf of Maine (GOM), USA, for this study. GOM is a hot spot of global climate change (average sea surface temperature (SST) increasing by >0.2°C/year) with >60% decline in mussel population over the past 40 years. 3. …

Hajdu Cheney Syndrome Due To Notch2 Defect - First Case Report From Pakistan And Review Of Literature, Sibtain Ahmed, Aahan Arif, Saadia Abbas, Muhammad Osama Khan, Salman Kirmani, Aysha Habib Khan

Department of Pathology and Laboratory Medicine

Introduction and importance: Hajdu Cheney Syndrome (HCS) is a rare skeletal disease characterized by severe, progressive focal bone loss with osteoporosis, variable craniofacial, vertebral anomalies and distinctive facial features. It is inherited as an autosomal dominant disease although sporadic cases have been described in literature. Identifying these cases in clinical practice is important for proper diagnosis and management.
Case presentation: We report a case of a 36-year-old male patient presented at metabolic bone disease clinic at the Aga Khan University Hospital with history of multiple fragility fractures and juvenile osteoporosis since childhood. DNA sequence analysis of the NOTCH2 coding sequence …

January 19, 2021, Saint Mary's College Of California

The Collegian

No abstract provided.

Association Of Presenting Symptoms With Abnormal Laboratory Values For Vector-Borne Illness — Experience In An Urban Gastroenterology Practice, Michael D. Erdman, Niloofar Kossari, Jessica Ye, Kristen H. Reynolds, Emily Blodget, B. Robert Mozayeni, Farshid Sam Rahbar

Journal of Patient-Centered Research and Reviews

Background: In the clinical setting, it is not common practice to consider a vector bite, such as from a tick or flea, to be a contributing factor to chronic digestive symptoms. This article investigates associations we have observed among symptomatic patients and positive blood tests for vector-borne illness (VBI).

Methods: Patients who visited an urban gastroenterology clinic over a 3-year period were retrospectively reviewed. A total of 270 patients presenting with a constellation of digestive symptoms — and who had no apparent digestive pathology and reported no prior diagnosis or treatments for VBI — were analyzed. Before the initial visit, …

Influence Of A One-Time Web-Based Provider Intervention On Patient-Reported Outcomes After The Well-Child Visit: A Feasibility Study, Chad M. Coleman, Gwen L. Alexander, Charles Barone, Andrew S. Bossick, Zeinab Kassem, Mei Lu, Yueren Zhou, Andrea E. Cassidy-Bushrow

Journal of Patient-Centered Research and Reviews

Purpose: Patient-centered care promotes positive health outcomes in pediatrics. We created a provider-focused intervention and implemented it in a pragmatic clustered randomized controlled trial to improve health-related quality of life (HRQOL) among pediatric patients.

Methods: A one-time (1–1.5-hour) webinar focusing on patient-centered care and motivational interviewing, using obesity screening as an example, was developed. Pediatric providers were recruited and randomized to either intervention (webinar) or control (usual care) arms. All well-child visits to these providers for a period of up to 5 months following webinar completion (or study enrollment for controls) were identified, and these family/patients were invited to complete …

“An Hundred Stories In Ten Days”: Covid-19 Lessons For Culture, Learning, And Copyright Law, Carys J. Craig, Bob Tarantino

Osgoode Hall Law Journal

In the face of a pandemic, copyright law may seem a frivolous concern; but its importance lies in the ever-expanding role that it plays in either enabling or constraining the kinds of communicative activities that are critical to a flourishing life. In this article, we reflect on how the cultural and educative practices that have burgeoned under quarantine conditions shed new light on a longstanding problem: The need to recalibrate the copyright system to better serve its purposes in the face of changing social and technological circumstances. We begin by discussing how copyright restrictions have manifested in a variety of …

January 19, 2021, The Daily Mississippian

Daily Mississippian (all digitized issues)

No abstract provided.

A Methodological Approach To Utilize Egyptian Colloquial Arabic As A Source For Ancient Egyptian Linguistic Analysis, Ahmed Osman

Theses and Dissertations

Traces of the ancient Egyptian language can still be observed in modern Egyptian colloquial Arabic, which is the form of Arabic adopted by Egyptians as their native spoken language. This thesis aims to better understand the ancient Egyptian language through the analysis of its lexical survivals. It presents a new methodological approach to utilize ancient Egyptian lexical survivals as a source to study the ancient Egyptian language. A selected set of fifty-five ancient Egyptian lexical survivals was computed by matching ancient Egyptian and documented Egyptian colloquial Arabic words having the same semantic fields. While it was generally assumed that the …

Complications And Comorbidities In Hispanic Patients Who Develop Traumatic And Nontraumatic Acute Compartment Syndrome, Jorge Alejandro Bernal, Annelyn Torres-Reveron, Jose Andres Gonzales

School of Medicine Publications

Acute compartment syndrome (ACS) is a medical emergency that remains under-recognized and understudied. This study aimed to identify risk factors for the traumatic and non-traumatic presentation of ACS within a majority Hispanic population. A four-year retrospective analysis of medical records in a single institution revealed 26 with traumatic and 21 non-traumatic patients presenting with ACS. Traumatic ACS occurred in younger males following fractures, as previously described in the field. After controlling for age differences, non-traumatic ACS occurred in older patients with multiple comorbidities, increased use of statins, and anticoagulants as compared to the traumatic ACS group. A large proportion (80%) …

Ecologies Of Hope: Understanding Educational Success Among Black Males In An Urban Midwestern City, Willie C. Harmon, Marlon C. James, Rasheedah Farooq

Journal of Multicultural Affairs

The American Psychological Association's Task Force on Resilience and Strength in Black Children and Adolescents (2008) called for resilience frameworks particularly designed to understand African American development. Thus, the present study explores the lives of seven academically successful Black males in an urban midwestern city. Using a Critical Race Theory framework, the researchers center the counterstories of men of color who matriculated through college from a "failing" high school in a challenging urban community. Using constant comparative analysis, two critical themes emerged: extended family and extended kinship support networks. A synthesis of these themes resulted in an emergent framework entitled …

Conservation Of Indigenous Tribal Culture At Tripura, India: A Proposed Model In E-Environment, Sudip Bhattacharjee

Library Philosophy and Practice (e-journal)

The tribal communities (indigenous groups) of Tripura have their respective arts and cultures or folklores or folktales which are initially oral and passed down to the younger generations by the senior members from generation to generation. Due to the modernization and influx of migrated people from the neighboring country to Tripura, created threats among the tribal communities for maintaining their unique identity and traditional cultures. Their enriched culture is getting mix-up and they are wondering to save their culture for the next generation. The present study discusses the issues and challenges faced by tribal communities to maintain their enriched arts …

Development Of Polymorphic Markers In The Immune Gene Complex Loci Of Cattle, K Bakshy, D Heimeier, J C. Schwartz, E J. Glass, S Wilkinson, R A. Skuce, A R. Allen, J Young, J C. Mcclure, J B. Cole, D J. Null, J A. Hammond, T P.L. Smith, D M. Bickhart

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The addition of cattle health and immunity traits to genomic selection indices holds promise to increase individual animal longevity and productivity, and decrease economic losses from disease. However, highly variable genomic loci that contain multiple immune-related genes were poorly assembled in the first iterations of the cattle reference genome assembly and underrepresented during the development of most commercial genotyping platforms. As a consequence, there is a paucity of genetic markers within these loci that may track haplotypes related to disease susceptibility. By using hierarchical assembly of bacterial artificial chromosome inserts spanning 3 of these immune-related gene regions, we were able …

The Presence Of Persistent Bovine Viral Diarrhea Virus Infection And A Novel Bosavirus In A Bison Herd, Ben M. Hause, Julia F. Ridpath, Angela E. Pillatzki, Tom Bragg, Christopher C.L. Chase

SDSU Beef Day 2021 Summary Publication

Objective
Bovine viral diarrhea virus (BVDV) is a significant pathogen of cattle, leading to losses due to reproductive failure, respiratory disease and immune dysregulation. An investigation was conducted in an American bison (Bison bison) herd dealing with reproductive issues in 2018-2019 calving season to determine likely cause of the losses.

Prevalence Of Bovine Viral Diarrhea Virus Subspecies Among Persistently Infected Samples From Cattle In The United States, Jessie Vallejo, Travis Clement, Matthew Dammen, Christopher C.L. Chase

SDSU Beef Day 2021 Summary Publication

Objective:
The focus of this survey was to determine the prevalence of BVDV subspecies in the United States.

Crow's Nest, January 18, 2021, Crow's Nest Staff

Crow's Nest

The January 18, 2021, issue of the Crow's Nest.

Nature In The Urban Context: Renaturalisation As An Important Dimension Of Urban Resilience And Planning, Steffen Lehmann

Architecture Faculty Research

How are our cities confronting the challenges posed by a warming climate, the loss of biodiversity and major resource depletion? ―This article discusses the opportunities and benefits of applying the concepts of renaturalisiation and rewilding of cities. It introduces Nature-Based Solutions (NBS) in urban planning that are integrated with the aim to enhance urban resilience and to slow down the biodiversity decline, which can be applied in two areas: through the conception of new green neighbourhoods; and through the regeneration and re-greening of existing but neglected parts of the city, such as postindustrial brownfields or economically weak districts. Contact to …

Characterization Of Maize Near-Isogenic Lines With Enhanced Flavonoid Expression To Be Used As Tools In Diet-Health Complexity, Binning Wu, Haotian Chang, Rich Marini, Surinder Chopra, Lavanya Reddivari

Department of Food Science Faculty Publications

Increasing incidence of chronic diseases in the 21st century has emphasized the importance of developing crops with enhanced nutritional value. Plant-based diets are associated with reduced incidence of many chronic diseases. The growing population and increased food demand have prioritized the development of high-yielding commercial crop varieties at the expense of natural flavors as well as health-benefiting compounds including polyphenols. Flavonoids are a large subfamily of polyphenols abundant in the plant kingdom with known health-promoting effects, making them a promising trait to be re-introduced into elite lines. Given the vast array of flavonoids and the complexity of plant food metabolome …

Animals In Our Lives: An Interactive Well-Being Perspective, Nancy V. Wünderlich, Jill Mosteller, Michael B. Beverland, Hilary Downey, Karen Kraus, Meng-Hsien (Jenny) Lin, Henna Syrjälä

College of Business Faculty Publications and Presentations

Humans have long interacted with animals. Recently, market-based responses to societal challenges, including loneliness and mental well-being include the use of animals. Considerable research concerning consumer–animal relationships has also examined the benefits (micro, meso, and macro) of human-animal interaction and companionship. However, much of this research is fragmented and lacks a broader organizing framework. It also suffers from an anthropomorphic bias, whereby the interests of animals are excluded. To address this, we provide a macromarketing perspective on consumer–animal relations and explore the interdependencies of consumer–animal relationships on consumer, animal, and community well-being. We introduce and apply the Interactive Well-Being framework …

Male Fetal Sex Affects Uteroplacental Angiogenesis In Growth Restriction Mouse Model, Jessica F. Hebert, Jess A. Millar, Rahul Raghavan, Amie L. Romney, Jason Podrabsky, Monique Y. Rennie, Allison Felker, Perrie O'Tierney-Ginn, Mayu Morita, Elizabeth A. Dupriest, Terry K. Morgan

Biology Faculty Publications and Presentations

Abnormally increased angiotensin II activity related to maternal angiotensinogen (AGT) genetic variants, or aberrant receptor activation, is associated with small-for-gestational-age (SGA) babies and abnormal uterine spiral artery remodeling in humans. Our group studies a murine AGT gene titration transgenic (TG; 3-copies of the AGT gene) model, which has a 20% increase in AGT expression mimicking a common human AGT genetic variant (A[-6]G) associated with intrauterine growth restriction (IUGR) and spiral artery pathology. We hypothesized that aberrant maternal AGT expression impacts pregnancy-induced uterine spiral artery angiogenesis in this mouse model leading to IUGR. We controlled for fetal sex and fetal genotype …

Nnoboa And Rotated Susu As Agents Of Savings Mobilization: Developing A Theoretical Model Using Grounded Theory, Aborampah Amoah-Mensah Dr.

The Qualitative Report

In this study, I investigate nnoboa and rotated susu systems and how they operate as indigenous cooperatives that mobilize savings from its members. I employ a qualitative approach, comprising seven focus group meetings in seven communities in the Bibiani-Anhwiaso-Bekwai Municipality in the Western North Region of Ghana. The findings show that the rotated susu concept emanates from the nnoboa concept and the two systems are underpinned by the following values: trust, synergy, flexibility and empathy, commitment, tolerance and punctuality and promptness. Another finding of the study is that the nnoboa and rotated susu systems offer participants a lot of mileage: …

Language Of Witness: Survivor Testimony And Narrative Representation Of The Mauthausen Experience, Siegrun Wildner

Faculty Publications

This study analyses and compares how survivors of the Nazi concentration camp of Mauthausen (Austria) recount significant events or situations in the camp at specific times and places in their testimonies published, right after the liberation, between 1945 and 1950. As an initial and exploratory stage of a large-scale investigation into survivor narratives, this article highlights two intersecting events at the Mauthausen main camp, Himmler’s visits and the arrival of Dutch Jews, and addresses the question of how Gostner, Hoffmann, Schifko-Pungartnik, Stantke, and Wiesenthal in their written accounts assessed, understood, reconstructed, and transmitted similar events, and how these camp experiences …