Digital Commons Network^™

Identification Of Novel Mites (Miniature Inverted-Repeat Transposable Elements) In Coxiella Burnetii: Implications For Protein And Small Rna Evolution, Shaun Wachter, Rahul Raghavan, Jenny Wachter, Michael F. Minnick

Biological Sciences Faculty Publications

Background: Coxiella burnetii is a Gram-negative gammaproteobacterium and zoonotic agent of Q fever. C. burnetii’s genome contains an abundance of pseudogenes and numerous selfish genetic elements. MITEs (miniature invertedrepeat transposable elements) are non-autonomous transposons that occur in all domains of life and are thought to be insertion sequences (ISs) that have lost their transposase function. Like most transposable elements (TEs), MITEs are thought to play an active role in evolution by altering gene function and expression through insertion and deletion activities. However, information regarding bacterial MITEs is limited.

Results: We describe two MITE families discovered during research on small non-coding …

Superresolved Three-Dimensional Analysis Of The Spatial Arrangement Of The Human Immunodeficiency Virus Type-1 (Hiv-1) Envelope Glycoprotein At Sites Of Viral Assembly, Carmen Anne Buttler

Electronic Theses and Dissertations

Human Immunodeficiency Virus type 1 (HIV-1) replicates by forcing infected host cells to produce new virus particles, which assemble form protein components on the inner leaflet of the host cell's plasma membrane. This involves incorporation of the essential viral envelope glycoprotein (Env) into a structural lattice of viral Gag proteins. The mechanism of Env recruitment and incorporation is not well understood. To better define this process, we seek to describe the timing of Env-Gag encounters during particle assembly by measuring angular positions of Env proteins about the surfaces of budding particles. Using three-dimensional superresolution microscopy, we show that Env distributions …

Ms Environmental Biology Capstone Project, Annamaria Marcel

Regis University Student Publications (comprehensive collection)

Due to the worldwide decline of biodiversity, protected nature reserves are necessary for species facing extinction. Many frog species have been experiencing rapid population decline and extinction due to the threat of the fungus Batrachochytrium dendrobatidis (Bd), which inflicts the highly transmittable and deadly disease chytridiomycosis. Chytridiomycosis causes increased skin tissue growth which disrupts respiration and the maintenance of water balance, which can ultimately lead to death. Certain ecological and geographical characteristics have been studied in order to assess their influence on Bd’s prevalence. Specifically, it is hypothesized that high elevations, lotic habitats, and low species richness have a positive …

A New Model Of Wheezing Severity In Young Children Using The Validated Isaac Wheezing Module: A Latent Variable Approach With Validation In Independent Cohorts., Steven M. Brunwasser Phd, Tebeb Gebretsadik, Diane R Gold, Kedir N Turi, Cosby A Stone, Soma Datta, James E Gern, Tina V Hartert

College of Science & Mathematics Departmental Research

BACKGROUND: The International Study of Asthma and Allergies in Children (ISAAC) Wheezing Module is commonly used to characterize pediatric asthma in epidemiological studies, including nearly all airway cohorts participating in the Environmental Influences on Child Health Outcomes (ECHO) consortium. However, there is no consensus model for operationalizing wheezing severity with this instrument in explanatory research studies. Severity is typically measured using coarsely-defined categorical variables, reducing power and potentially underestimating etiological associations. More precise measurement approaches could improve testing of etiological theories of wheezing illness.

METHODS: We evaluated a continuous latent variable model of pediatric wheezing severity based on four ISAAC …

Voices Of Usu: An Anthology Of Student Writing, Vol. 11, Utah State University Department Of English

Voices of USU

This collection of student writing represents the voices of over 2,000 students who enroll each academic year in Utah State University’s second-year composition course, Intermediate Writing: Research Writing in a Persuasive Mode. Voices of USU celebrates excellence in writing by providing undergraduate students of diverse backgrounds and disciplines the opportunity to have their work published.

Implementing Parallel Spreadsheet Models For Health Policy Decisions: The Impact Of Unintentional Errors On Model Projections, Stephanie L. Bailey, Rose S. Bono, Denis Nash, April D. Kimmel

Health Policy Publications

Background

Spreadsheet software is increasingly used to implement systems science models informing health policy decisions, both in academia and in practice where technical capacity may be limited. However, spreadsheet models are prone to unintentional errors that may not always be identified using standard error-checking techniques. Our objective was to illustrate, through a methodologic case study analysis, the impact of unintentional errors on model projections by implementing parallel model versions.

Methods

We leveraged a real-world need to revise an existing spreadsheet model designed to inform HIV policy. We developed three parallel versions of a previously validated spreadsheet-based model; versions differed by …

Unm Pathology Pathfinder Winter 2018, Unm Department Of Pathology

Newsletters

No abstract provided.

Abstracts From Proceedings Of The 14th North American Crane Workshop

Proceedings of the North American Crane Workshop

CRANES AND AGRICULTURE: A DELICATE BALANCE. Jane E. Austin and Kerryn M. Morrison 149

NOCTURNAL ROOSTING BEHAVIOR OF SANDHILL CRANES ON THE PLATTE RIVER, NEBRASKA. David A.Brandt, Pamela J. Pietz, Deborah A. Buhl, Wesley E. Newton, Gary L. Krapu, and Aaron T. Pearse 149

USING HOME RANGES AND SITE FIDELITY TO IDENTIFY AREAS OF IMPORTANCE FOR OVERWINTERING SANDHILL CRANES ON THE SOUTHERN HIGH PLAINS Kathryn Brautigam, Blake A. Grisham, William Johnson, Nicole Athearn, David L. Boren, Dan P. Collins, Shaun Oldenburger, Jude Smith, and Warren Conway 150

IN VITRO METHODS FOR EXAMINING MALE FERTILITY IN CRANE SPECIES Megan E. Brown, …

The Naked Mole Rat Possesses A Differently Phased Core Clock System Along With A Different Glucose Handling And Mtor Systems Compared To The Common Lab Mouse, Soumyaditya Ghosh

ETD Archive

INTRODUCTION The Naked Mole Rat [ Heterocephalus glaber] is a type of rodent -with the highest average lifespan-30 years-among all the rodent species. It lives underground in sealed burrow systems with little to no exposure to day-night transitions on the surface. It shows polyphasic round the clock activity within its subterranean burrow system. The activity and physiology of most animals are governed by the biological circadian clock. The biological circadian clock is a system that oscillates with a rough periodicity of 24 hours. Environmental zeitgebers regulate the entrainment of the circadian clock to the 24-hour day-night cycle and light is …

Emotional Responses To Opioid Public Service Announcements; Testing Trait Empathy’S Impact On Message Processing And Attitude Change, Olivia D. Cohen

ETD Archive

Addiction to opioids, including abusing prescription pain killers and using heroin, is on a dramatic rise in the United States. Communities across the country are in the process of adapting new ways of addressing the issue, which have been met with significant opposition from the general public. This study examined the impact an individual’s trait empathy has on whether persuasive public service announcements (PSAs) dealing with opioid addiction will be processed centrally or peripherally. Empathy has evolved, growing from an emotional experience, to a cognitive ability, to a function of both emotional and cognitive elements that can work both independently …

Relationships Between Hiv Testing, Knowledge, And Stigma Among Men: Reports From Belarus, Moldova, And Ukraine, Jildyz Urbaeva, Lynn Warner

Social Welfare Faculty Scholarship

A surge in heterosexual transmission of HIV among men in post-Soviet countries prompts the need to understand the determinants of HIV testing in the region. Survey data from Belarus (n = 2,769), Moldova (n = 1,545), and Ukraine (n = 3,620) were used to assess an influence of psychosocial determinants on testing among men. A mediation analysis for binary outcomes was used to assess effects of knowledge and stigma on testing. While knowledge had a positive influence on testing in each country, an indirect influence of knowledge through stigma was unique for each country. Implications for interventions …

Progress Toward The Synthesis Of Novel Bacterial Topoisomerase Inhibitors Derived From Fluoroquinolones. N-1 Alkyne Derivaties, Sara Biel, Michael Barbachyn

Summer Research

Bacterial resistance continues to be a growing threat throughout the world. In the US alone, 2 million people are infected by, and 23,000 die from antibiotic-resistant bacteria each year. 1 Developing antibiotics to treat infections caused by Gram-negative and Gram-positive bacteria has become the focus of research efforts worldwide. Fluoroquinolones are a large, marketed class of antimicrobial agents that are effective against both types of bacteria. They target DNA Gyrase and Topoisomerase IV, type II topoisomerase enzymes that are involved in DNA replication, specifically negative supercoiling and decatenation, respectively.

As fluoroquinolones have been clinically used since the mid 80’s, their …

A How-To Guide On Bringing Undergraduate Research To Community And Technical Colleges, Angelo Kolokithas, Olga Calderón

Publications and Research

Increasing the interest and participation of students in STEM is a priority for colleges, universities, and the nation as a whole. As new generations of students embark in training and in learning novel technologies to deal with the challenges of emerging infectious diseases, crop and food production, and the development of new and better sustainable alternatives in the face of a changing environment on our planet, we must also evolve our approach to teaching and learning. One strategy that may be found helpful as students face the challenges ahead is to instill inquiry and problem-solving skills as part of their …

Toward Better Keys For Lectin Locks: Glycoconjugates Versus Glycomimetics, Peng Wen

Wayne State University Dissertations

As one of the four major classes of macromolecule in living systems, the roles of carbohydrates as energy storage substances and structural components have long been recognized. However, the unique role of carbohydrates in cellular recognition processes has only been scrutinized since the 1960s, thanks to the progress in the research in both cell surface carbohydrates and carbohydrate-binding proteins (lectins). The advances in the research of such process demand the use of carbohydrates as basic tools. Therefore, the primary goal of glycochemistry has been to obtain complex carbohydrates and their analogs effectively. One common approach to the problem involves the …

Optimal Duration For Continuation Of Statin Therapy In Bacteremic Patients, Ajinkya M. Pawar, L. Laplante, Tristan T. Timbrook, Aisling R. Caffrey

Pharmacy Practice and Clinical Research Faculty Publications

Background: Evidence suggests statins may improve survival in patients with bloodstream infections. However, there is no consensus on optimal timing and duration of exposure.

Objectives: To quantify statin therapy duration associated with decreased mortality in bacteremic statin users.

Methods: We conducted a case-control study using OptumClinformatics™ with matched Premier hospital data (1 October 2009–31 March 2013). Cases who died during the hospitalization were matched 1:1 to survivors on disease risk scores (DRSs). Post-admission statin therapy duration was evaluated in patients with at least 90 days of pre-admission continuous statin use. Classification and regression tree (CART) analysis was …

Stevens-Johnson Syndrome And Toxic Epidermal Necrolysis With Antiepileptic Drugs: An Analysis Of The Food And Drug Administration Adverse Event Reporting System (Faers), Eric P. Borrelli, Y. Lee, Andrew M. Descoteaux, Stephen Jon Kogut, Aisling R. Caffrey

Pharmacy Practice and Clinical Research Faculty Publications

Objective

Stevens‐Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN) are rare and potentially fatal adverse skin reactions that are most commonly triggered by certain medications. One class of medications that has been highly associated with SJS/TEN reactions is antiepileptic drugs (AEDs). We sought to quantify the risk of SJS/TEN associated with AEDs as a class, as well as individual AEDs, in the United States.

Methods

An analysis was performed of the US Food and Drug Administration Adverse Event Reporting System (FAERS) from July 2014 through December 2017. Rates of SJS/TEN were calculated for each AED compared with all other non‐AEDs. …

Effectiveness Of A Multivitamin Supplementation Program Among Hiv-Infected Adults In Tanzania, Christopher R. Sudfeld, L. Buchanan, Nzovu Ulenga, Donna Spiegelman, Expeditho Mtisi, Ellen Hertzmark, Aisa N. Muya, David Sando, Ester Mungure, Mucho Mizinduko, Wafaie W. Fawzi

Pharmacy Practice and Clinical Research Faculty Publications

Objective: The objective of this study was to assess the effectiveness of a routine multivitamin supplementation program for adults living with HIV in Tanzania.

Design: We conducted a retrospective cohort study of 67,707 adults enrolled in the Dar es Salaam HIV care and treatment program during 2004-2012.

Methods: The Dar es Salaam HIV care and treatment program intended to provide all adult patients with multivitamin supplements (vitamins B-complex, C, and E) free of charge; however, intermittent stockouts and other implementation issues did not afford universal coverage. We use Cox proportional hazard models to assess the time-varying association of multivitamin supplementation …

Outcomes In Human Immunodeficiency Virus Infected Recipients Of Heart And Lung Transplants, Chao Chen, Wen, Nicholas Belviso, Stephen Jon Kogut, Jerry Mccauley

Pharmacy Practice and Clinical Research Faculty Publications

Background: With the advent of combined antiretroviral therapy (cART), growing evidence has shown human immunodeficiency virus (HIV) may no longer be an absolute contraindication for solid organ transplantation. This study compares outcomes of heart transplantations between HIV‐positive and HIV‐negative recipients using SRTR transplant registry data.

Methods: Patient survival, overall graft survival and death‐censored graft survival were compared between HIV‐positive and HIV‐negative recipients. Multivariate Cox regression and Cox regression with a disease risk score (DRS) methodology were used to estimate the adjusted hazard ratios among heart transplant recipients (HTRs).

Results: In total, 35 HTRs with HIV+ status were …

Predictors Of Mortality Among A National Cohort Of Veterans With Recurrent Clostridium Difficile Infection, Haley J. Appaneal, R. Caffrey, Maya Beganovic, Sanja Avramovic, Kerry L. Laplante

Pharmacy Practice and Clinical Research Faculty Publications

Background: Though recurrent Clostridium difficile infection (CDI) is common and poses a major clinical concern, data are lacking regarding mortality among patients who survive their initial CDI and have subsequent recurrences. Risk factors for mortality in patients with recurrent CDI are largely unknown.

Methods: Veterans Affairs patients with a first CDI (stool sample with positive C. difficile toxin(s) and ≥2 days CDI treatment) were included (2010–2014). Subsequent recurrences were defined as additional CDI episodes ≥14 days after the stool test date and within 30 days of the end of treatment. A matched (1:4) case–control analysis was conducted using …

1238. A National Comparison Of Antibiograms Between Veterans Affairs Long-Term Care Facilities And Affiliated Hospitals, Maria-Stephanie Tolg, R. Caffrey, Haley Appaneal, Robin Jump, Vrishali Lopes, David Dosa, Kerry L. Laplante

Pharmacy Practice and Clinical Research Faculty Publications

Background: Long-term care facilities (LTCFs) face several barriers to creating antibiograms. Here, we evaluate if LTCFs can use antibiograms from affiliated hospitals as their own antibiogram.

Methods: Facility-specific antibiograms were created for all Veterans Affairs (VA) LTCFs and VA Medical Centers (VAMCs) for 2017. LTCFs and affiliated VAMCs were paired and classified as being on the same campus or geographically distinct campuses based on self-report. For each pair, Escherichia colisusceptibility rates (%S) to cefazolin, ceftriaxone, cefepime, ciprofloxacin, nitrofurantoin, sulfamethoxazole/trimethoprim, ampicillin/sulbactam, piperacillin/tazobactam, and imipenem were compared. As guidelines discourage empiric use of antibiotics if susceptibility rates are

Results …

470. Concomitant Antibiotic Use And Death Among A National Cohort Of Veterans With Clostridium Difficile Infection (Cdi), Haley Appaneal, R. Caffrey, Kerry L. Laplante

Pharmacy Practice and Clinical Research Faculty Publications

Background: Antibiotic use is a well-known risk factor for development of CDI, and there is preliminary evidence suggesting concomitant antibiotic use may result in poor outcomes, including death. This work investigated the effect of concomitant antibiotic exposure during CDI treatment on mortality among patients with CDI.

Methods: We conducted a national retrospective study of Veterans with a first CDI between 2010 and 2014, defined as a positive C. difficile toxin(s) and no episode in the year prior. Those treated with guideline recommended CDI treatment were included (10–14 days of PO or IV metronidazole, PO or PR vancomycin, or …

Real World Evidence - What It Is And What It Can Tell Us According To The International Society For Pharmacoepidemiology (Ispe) Comparative Effectiveness Research (Cer) Special Interest Group (Sig), Hongbo Yuan, Sanni Ali, Emily S. Brouwer, Cynthis J. Girman, Jeff J. Guo, Jennifer L. Lund, Elisabetta Patorno, Jonathan L. Slaughter, Xuerong Wen, Dimitri Bennett

Pharmacy Practice and Clinical Research Faculty Publications

On December 8, 2016, the New England Journal of Medicine published a sounding board on Real World Evidence (RWE)¹ by the US Food and Drug Administration (FDA) leadership. While the value of RWE based on nonrandomized observational studies was appreciated, such as for hypothesis generating, safety, and measuring quality in healthcare delivery, the authors expressed concerns on the quality of data sources and the ability of methodologies to control for confounding. In response, we offer a few considerations regarding these concerns.

The Climate Justice Movement In Western New York, Sam Magavern, Lynda Schneekloth

Buffalo Environmental Law Journal

No abstract provided.

Mucosal Antibody Responses To Vaccines Targeting Siv Protease Cleavage Sites Or Fulllength Gag And Env Proteins In Mauritian Cynomolgus Macaques, Hongzhao Li, Yan Hai, So-Yon Lim, Nikki Toledo, Jose Crecente-Campo, Dane Schalk, Lin Li, Robert W. Omange, Tamara G. Dacoba, Lewis R. Liu, Mohammad Abul Kashem, Yanmin Wan, Binhua Liang, Qingsheng Li, Eva Rakasz, Nancy Schultz-Darken, Maria J. Alonso, Francis A. Plummer, James B. Whitney, Ma Luo

Nebraska Center for Virology: Faculty Publications

HIV mutates rapidly and infects CD4⁺ T cells, especially when they are activated. A vaccine targeting conserved, essential viral elements while limiting CD4⁺ T cell activation could be effective. Learning from natural immunity observed in a group of highly HIV-1 exposed seronegative Kenyan female sex workers, we are testing a novel candidate HIV vaccine targeting the 12 viral protease cleavage sites (PCSs) (the PCS vaccine), in comparison with a vaccine targeting full-length Gag and Env (the Gag/Env vaccine) in a Mauritian cynomolgus macaque/SIV model. In this study we evaluated these vaccines for induction of mucosal antibodies to SIV …

Research Priorities For Managing Invasive Wild Pigs In North America, James C. Beasley, Stephen S. Ditchkoff, John J. Mayer, Mark D. Smith, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

With recent increases in distribution and numbers of feral pigs (Sus scrofa; invasive wild pigs) in North America, there has been a concurrent increase in the ecological and economic effects they have had on native and anthropogenic ecosystems. Despite the amplified interest in invasive wild pig research, there remains a significant knowledge gap regarding their basic biology and ecology, the scope of the damage they cause, and the efficacy of many control strategies. Such information is important to support the successful management of invasive wild pigs throughout North America and other areas. In 2016, members of the National …

Book Review, Are R. Berentsen

United States Department of Agriculture Wildlife Services: Staff Publications

The tropics and subtropics are found between the Tropics of Cancer and Capricorn and are home to approximately 75% of the world’s human population. The region boasts an impressive biodiversity but also contains some of the world’s poorest communities, which in some regions are growing at a faster rate than in other areas of the world. As regional and global human populations continue to grow, so do the impacts on natural resources and biodiversity. These impacts can be felt on both global and local levels. Tropical Conservation: Perspectives on Local and Global Priorities provides well-referenced information on a variety of …

Chesapeake Bay Nutria Eradication Project: 2017 Update, Margaret Pepper, Kevin Sullivan, Robert Colona, Jonathan Mcknight

United States Department of Agriculture Wildlife Services: Staff Publications

Nutria, a semi-aquatic, South American rodent, was introduced to Maryland during the early 1940s. Originally brought to the area for fur farms, the market never established and animals were released or escaped. Nutria thrived, destroying coastal wetlands which resulted in negative environmental and economic impacts to the Chesapeake Bay region. To preserve and protect valuable wetland resources, the Chesapeake Bay Nutria Eradication Project (CBNEP) was established in 2002 through a partnership between the United States Fish and Wildlife Service, the United States Department of Agriculture’s Wildlife Services, Maryland Department of Natural Resources, and many state agencies and non-governmental organizations. Since …

Neutralizing Antibodies Against Flaviviruses, Babanki Virus, And Rift Valley Fever Virus In Ugandan Bats, Rebekah C. Kading, Robert M. Kityo, Eric C. Mossel, Erin M. Borland, Teddie Nakayiki, Betty Nalikka, Luke Nyakarahuka, Jeremy P. Ledermann, Nicholas A. Panella, Amy T. Gilbert, Mary B. Crabtree, Julian Kerbis Peterhans, Jonathan S. Towner, Brian R. Amman, Tara K. Sealy, Stuart T. Nichol, Ann M. Powers, Julius J. Lutwama, Barry R. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Introduction: A number of arboviruses have previously been isolated from naturally-infected East African bats, however the role of bats in arbovirus maintenance is poorly understood. The aim of this study was to investigate the exposure history of Ugandan bats to a panel of arboviruses. Materials and methods: Insectivorous and fruit bats were captured from multiple locations throughout Uganda during 2009 and 2011–2013. All serum samples were tested for neutralizing antibodies against West Nile virus (WNV), yellow fever virus (YFV), dengue 2 virus (DENV-2), Zika virus (ZIKV), Babanki virus (BBKV), and Rift Valley fever virus (RVFV) by plaque reduction neutralization test …

Modeling The Disappearance Of The Neanderthals Using Concepts Of Population Dynamics And Ecology, Michael F. Roberts, Stephen E. Bricher

Faculty Publications

Current hypotheses regarding the disappearance of Neanderthals (NEA) in Europe fall into two main categories: climate change, and competition. Here we review current research and existing mathematical models that deal with this question, and we propose an approach that incorporates and permits the investigation of the current hypotheses. We have developed a set of differential equations that model population dynamics of anatomically modern humans (AMH) and NEA, their ecological relations to prey species, and their mutual interactions. The model allows investigators to explore each of the two main categories or combinations of both, as well as various forms of competition …

An Investigation Into Tetrodotoxin (Ttx) Levels Associated With The Red Dorsal Spots In Eastern Newt (Notophthalmus Viridescens) Efts And Adults, Mackenzie M. Spicer, Amber N. Stokes, Trevor L. Chapman, Edmund D. Brodie, Edmund D. Brodia, Brian G. Gall

ETSU Faculty Works

We investigated the concentration of tetrodotoxin (TTX) in sections of skin containing and lacking red dorsal spots in both Eastern newt (Notophthalmus viridescens) efts and adults. Several other species, such as Pleurodeles waltl and Echinotriton andersoni, have granular glands concentrated in brightly pigmented regions on the dorsum, and thus we hypothesized that the red dorsal spots of Eastern newts may also possess higher levels of TTX than the surrounding skin. We found no difference between the concentrations of TTX in the red spots as compared to neighboring skin lacking these spots in either efts or adults. However, efts with more …