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2016

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Multiple Perspectives On The Hardware Implementations Of Biological Neuron Models And Programmable Design Aspects, Ni̇met Korkmaz, İsmai̇l Öztürk, Recai̇ Kiliç Jan 2016

Multiple Perspectives On The Hardware Implementations Of Biological Neuron Models And Programmable Design Aspects, Ni̇met Korkmaz, İsmai̇l Öztürk, Recai̇ Kiliç

Turkish Journal of Electrical Engineering and Computer Sciences

A few individual design examples of programmable device-based biological neuron model implementations are available in the literature, but there is no comprehensive study that examines analog and digital programmable design examples of frequently studied biological neuron model implementations. The aim of this paper is to present a comparative study about programmable and reconfigurable implementations of the FitzHugh--Nagumo, Izhikevich, and Hindmarsh--Rose neuron models. Since field programmable analog array (FPAA) and field programmable gate array (FPGA) devices offer several advantages such as flexible design possibilities, reduction of the complexity of design, real-time modification, and software control for programmable and reconfigurable implementations of …

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System Identification By Using Migrating Birds Optimization Algorithm: A Comparative Performance Analysis, Hasan Makas, Nejat Yumuşak Jan 2016

System Identification By Using Migrating Birds Optimization Algorithm: A Comparative Performance Analysis, Hasan Makas, Nejat Yumuşak

Turkish Journal of Electrical Engineering and Computer Sciences

System identification is an important process to investigate and understand the behavior of an unknown system. It aims to establish an interface between the real system and its mathematical representation. Conventional system identification methods generally need differentiable search spaces and they cannot be used for nondifferentiable multimodal search spaces. On the other hand, metaheuristic search algorithms are independent from the search space characteristics and they do not need much knowledge about the real system. The migrating birds optimization algorithm is a recently introduced nature-inspired metaheuristic neighborhood search approach. It simulates the V flight formation of migrating birds, which enables birds …

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Classification Of Short-Circuit Faults In High-Voltage Energy Transmission Line Using Energy Of Instantaneous Active Power Components-Based Common Vector Approach, Mehmet Yumurtaci, Gökhan Gökmen, Çağri Kocaman, Semi̇h Ergi̇n, Osman Kiliç Jan 2016

Classification Of Short-Circuit Faults In High-Voltage Energy Transmission Line Using Energy Of Instantaneous Active Power Components-Based Common Vector Approach, Mehmet Yumurtaci, Gökhan Gökmen, Çağri Kocaman, Semi̇h Ergi̇n, Osman Kiliç

Turkish Journal of Electrical Engineering and Computer Sciences

The majority of power system faults occur in transmission lines. The classification of these faults in power systems is an important issue. In this paper, the real parameters of a 28 km, 154 kV transmission line between Simav and Demirci in Turkey's electricity transmission network is simulated in MATLAB/Simulink. Wavelet packet transform (WPT) is applied to instantaneous voltage signals. Instantaneous active power components are obtained by multiplying instantaneous currents obtained from a voltage source side with these WPT-based voltage signal components. A new feature vector extraction scheme is employed by calculating the energies of instantaneous active power components. Constructed feature …

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Some Properties Of Digital H-Spaces, Özgür Ege, İsmet Karaca Jan 2016

Some Properties Of Digital H-Spaces, Özgür Ege, İsmet Karaca

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, we study certain properties of digital H-spaces. We prove that a digital image that has the same digital homotopy type with any digital H-space is also a digital H-space. We show that the digital fundamental group of a digital H-space is abelian. We give examples that are related to a digital homotopy associative H-space and a $\kappa $-contractible digital H-space. Several important applications of digital H-spaces are given in computer vision and image processing. Finally, we deal with the importance of digital H-space in digital topology and image processing. We conclude that any $\kappa $-contractible digital image …

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Application Of Kappa Statistics In Sequential Tests For Family-Based Design, Farid Rajabli Jan 2016

Application Of Kappa Statistics In Sequential Tests For Family-Based Design, Farid Rajabli

Turkish Journal of Electrical Engineering and Computer Sciences

Family-based designs are commonly used in genetic association studies to locate markers associated with diseases. It is a challenging task to collect a large enough sample size, perform a statistical test, and obtain the desired statistical power. The sequential probability ratio test (SPRT) was introduced to overcome the limited sample size problem. However, the drawback of SPRT is that, for the sake of accuracy, the test leaves many markers in a gray zone meaning ``no decision''. In this article, we propose a novel approach: a sequential probability ratio test `plus' (SPRT$+)$ to reduce the number of these gray zone markers. …

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In Silico Genome-Wide Identification And Analysis Of Microsatellite Repeats In The Largest Rna Virus Family (Closteroviridae), Biju George, Binu George, Mayur Awasthi, Ram Nageena Singh Jan 2016

In Silico Genome-Wide Identification And Analysis Of Microsatellite Repeats In The Largest Rna Virus Family (Closteroviridae), Biju George, Binu George, Mayur Awasthi, Ram Nageena Singh

Turkish Journal of Biology

Microsatellites are known to exhibit ubiquitous presence across all kingdoms of life, including viruses. Members of the family Closteroviridae are the largest RNA viruses and severely affect different agricultural crops worldwide, including1397645907citrus, grapevine, and vegetables. Here we identified and systematically analyzed the nature and distribution of both simple and complex microsatellites present in the complete genome of 36 species belonging to Closteroviridae. Our results showed, in all analyzed genomes, that neither genome size nor GC content had any influence on number, relative abundance, or relative density of microsatellites. For each genome, dinucleotide repeats were found to be highly predominant and …

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Anatomical And Ultrastructural Responses Of Brassica Napus After Long-Term Exposure To Excess Zinc, Seyed Mousa Mousavi Kouhi, Mehrdad Lahouti, Ali Ganjeali, Mohammad Hassan Entezari Jan 2016

Anatomical And Ultrastructural Responses Of Brassica Napus After Long-Term Exposure To Excess Zinc, Seyed Mousa Mousavi Kouhi, Mehrdad Lahouti, Ali Ganjeali, Mohammad Hassan Entezari

Turkish Journal of Biology

Heavy metal contamination resulting from anthropogenic activities is one of the major environmental problems in the modern world. Progress toward creating modified plants that are more efficient in phytoremediation requires an understanding of the anatomical and ultrastructural changes involved in heavy metal accumulation. A large supply of zinc (Zn) is toxic for plants and can lead to functional and structural disorders. The present study investigates the anatomical and ultrastructural responses of Brassica napus (rapeseed) to excess Zn after long-term exposure. Results showed that Zn bioaccumulation in the roots and leaves of plants treated with 350 μM Zn2+ was severely increased, …

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Genetic Identification With Heteroplasmic Variations In Maternally Related Individuals In Forensic Cases, Ayşen Tezel, Ömer Çeti̇nkaya, Burçak Güzeltepe, Nurgül Kiliç Jan 2016

Genetic Identification With Heteroplasmic Variations In Maternally Related Individuals In Forensic Cases, Ayşen Tezel, Ömer Çeti̇nkaya, Burçak Güzeltepe, Nurgül Kiliç

Turkish Journal of Biology

Mitochondrial DNA (mtDNA), inherited from the mother, is used in a large variety of areas. In order to evaluate the connection between an incident and the victim or suspect in the analysis of criminal cases, DNA was obtained from buccal swabs sampled from 21 volunteers related through the mother's generation. Using Seqscape (v2.5.5) in an ABI 3100x1 capillary electrophoresis system, mtDNA sequence analyses were performed and compared to the revised Cambridge Reference Sequence. Individual mtDNA variations were detected. In three individuals, point heteroplasmy was observed. The results were evaluated according to the mtDNA typing guidelines established by the International Society …

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Failure Of Biological Control Of Frankliniella Occidentalis On Protected Eggplants Using Amblyseius Swirskii In The Mediterranean Region Of Turkey, Hali̇l Kütük, Mehmet Karacaoğlu, Mustafa Tüfekli̇, Raul Villanueva Jan 2016

Failure Of Biological Control Of Frankliniella Occidentalis On Protected Eggplants Using Amblyseius Swirskii In The Mediterranean Region Of Turkey, Hali̇l Kütük, Mehmet Karacaoğlu, Mustafa Tüfekli̇, Raul Villanueva

Turkish Journal of Agriculture and Forestry

The western flower thrips, Frankliniella occidentalis (Pergande), is one of the most important insect pests in the Mediterranean region of Turkey. Thrips infestation is the main cause of vegetable crops losses in low polythene tunnels and plastic greenhouses. Chemical control has been the primary means to control F. Occidentalis in protected cultivation systems in Turkey. A search of alternatives to conventional insecticides for the control of F. Occidentalis has drawn increased interest in the use of biocontrol agents. This study evaluated the control efficiency of F. Occidentalis on eggplants through releases of the predatory mite Amblyseius swirskii (Athias-Henriot) at a …

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Diversity Analysis Of Genetic, Agronomic, And Quality Characteristics Of Bread Wheat (Triticum Aestivum L.) Cultivars Grown In Turkey, Mustafa Erayman, Emre İlhan, Abdi̇l Hakan Eren, Hüseyi̇n Güngör, Batuhan Akgöl Jan 2016

Diversity Analysis Of Genetic, Agronomic, And Quality Characteristics Of Bread Wheat (Triticum Aestivum L.) Cultivars Grown In Turkey, Mustafa Erayman, Emre İlhan, Abdi̇l Hakan Eren, Hüseyi̇n Güngör, Batuhan Akgöl

Turkish Journal of Agriculture and Forestry

Turkey is an important bread wheat producer. The objective of this study was to dissect the diversity of genetic, agronomic, and quality characteristics of bread wheat cultivars grown on 25% of the total wheat area in Turkey. A total of 24 wheat cultivars and 5 wild progenitors of wheat were examined using 24 simple sequence repeat (SSR) primers with a known physical locus on the A, B, and D genomes of hexaploid wheat. A total of 72 bands produced 939 alleles on the wheat cultivars and wild progenitors. Markers were efficient in discriminating the species and the highest genetic diversity …

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Analysis Of Dendrometric Diversity Among Natural Populationsof Cork Oak (Quercus Suber L.) From Morocco, Amal Laakili, Bouchra Belkadi, Fatima Gaboun, Chaimaa Yatrib, Mohamed Makhloufi, Salwa El Antry, Leila Medraoui, Ahmed Laamarti, Abdelkarim Filali-Maltouf Jan 2016

Analysis Of Dendrometric Diversity Among Natural Populationsof Cork Oak (Quercus Suber L.) From Morocco, Amal Laakili, Bouchra Belkadi, Fatima Gaboun, Chaimaa Yatrib, Mohamed Makhloufi, Salwa El Antry, Leila Medraoui, Ahmed Laamarti, Abdelkarim Filali-Maltouf

Turkish Journal of Agriculture and Forestry

The cork oak (Quercus suber L.) has been the focus of research dealing with the conservation and reforestation of this species due to its economic importance and the problem of deforestation affecting it. The genetic diversity of this tree species, its main aspect of adaptation, has not been sufficiently studied. The Moroccan cork oak tree is found in the northern part of the country, where the fruits of the tree are soft corns. This forest tree species has undergone a strong decline due to many factors, including a significant loss of its biological diversity. While working within the national framework …

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Cancer Stem Cells: Lessons Learned From The Leukemic Stem Cells, Ayten Kandi̇lci̇ Jan 2016

Cancer Stem Cells: Lessons Learned From The Leukemic Stem Cells, Ayten Kandi̇lci̇

Turkish Journal of Biology

Cancer is the second cause of death in Turkey and the frequency of cancer deaths increased from 12% in 2002 to 21% in 2009 ( Özkan et al., 2013). To win the war on cancer, we certainly need to apply well-planned prevention policies, given that it is caused mostly by environmental factors, and to develop more effective therapies. To achieve a cure for the disease, it is crucial to understand the cellular and molecular mechanisms leading to cancer and to therapeutically target all the factors playing a role in the initiation, progression, maintenance, and relapse of the disease, preferably in …

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Epigenetics: The Guardian Of Pluripotency And Differentiation, Marta Gladych, Aleksandra Nijak, Paula Lota, Urszula Oleksiewicz Jan 2016

Epigenetics: The Guardian Of Pluripotency And Differentiation, Marta Gladych, Aleksandra Nijak, Paula Lota, Urszula Oleksiewicz

Turkish Journal of Biology

Multicellular organisms comprise a variety of cell types that have the same genotype but distinct phenotypes. This diversity is possible because of the establishment of a specific epigenetic landscape that stabilizes gene expression profiles that are exclusive for a particular cell type. Accumulating data indicate that the maintenance, loss, and reacquisition of pluripotency are dynamically regulated by epigenetic alterations evoked by a subset of cellular factors. A better understanding of the epigenetic mechanisms involved in stem cell biology and differentiation will improve our ability to use these cells in the clinical context. Here we review current insights into the epigenetic …

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Pluripotent Stem Cells And Their Use In Hearing Loss, Ahmet Hamdi̇ Kepekçi̇, Okan Özgür Özturan, Mustafa Yavuz Köker Jan 2016

Pluripotent Stem Cells And Their Use In Hearing Loss, Ahmet Hamdi̇ Kepekçi̇, Okan Özgür Özturan, Mustafa Yavuz Köker

Turkish Journal of Biology

Throughout its half a century of development, stem cell research has included two main fields: embryonic stem (ES) cell research and the reprogramming of body somatic cells. In the present review we focused on stem cell reprogramming and its relation with otolaryngology. The human body somatic cells are transformed into pluripotent cells by three basic methods: the somatic nuclear transfer method, the somatic cell fusion method (getting cellular pluripotent capacity in cellular reprogramming), and by transcription factors influencing the body somatic cells to generate reprogrammed induced pluripotent stem (iPS) cells. ES cells and iPS cells have pluripotency and differentiate into …

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Limbal Stem Cell Deficiency: Special Focus On Tracking Limbal Stem Cells, Santhosh Kacham, Bhaskar Birru, Sreenivasa Rao Parcha, Ramaraju Baadhe Jan 2016

Limbal Stem Cell Deficiency: Special Focus On Tracking Limbal Stem Cells, Santhosh Kacham, Bhaskar Birru, Sreenivasa Rao Parcha, Ramaraju Baadhe

Turkish Journal of Biology

The cornea, the transparent part of the eye that helps in the formation of images, has multiple layers. Among them, the superficial epithelial layer is protected and maintained homeostatically by the limbus, located in the periphery of the cornea. Limbal stem cells are located at the basal layer of the limbus and the loss of these cells is called limbal stem cell deficiency (LSCD). LSCD is characterized by corneal vascularization, inflammation, and conjunctivalization, which ultimately lead to blindness. Several clinical transplantation procedures used for the treatment of LSCD are cultivated limbal epithelial transplantation, simple limbal epithelial transplantation, and cultured oral …

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Diversity Analysis Of Green Gram (Vigna Radiata (L.) Wilczek)Through Morphological And Molecular Markers, Gunjeet Kaur, Arunabh Joshi, Devendra Jain, Ravish Choudhary, Divya Vyas Jan 2016

Diversity Analysis Of Green Gram (Vigna Radiata (L.) Wilczek)Through Morphological And Molecular Markers, Gunjeet Kaur, Arunabh Joshi, Devendra Jain, Ravish Choudhary, Divya Vyas

Turkish Journal of Agriculture and Forestry

Twenty-three genotypes of green gram (Vigna radiata (L.) Wilczek) were collected to determine the extent of genetic diversity through morphological characters as well as random amplified polymorphic DNA (RAPD), inter-simple sequence repeat (ISSR), and simple sequence repeat (SSR) fingerprinting results. Analysis of variance revealed significant mean square values that indicated a substantial degree of genetic variability among the genotypes. Significant genetic variance was observed for days to 50% maturity, days to maturity, plant height (cm), number of branches/plant, number of pods/plant, pod length (cm), 1000-seed weight (g), seed yield/plant (g), biological yield (g), and harvest index (%) during cultivation in …

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Comparison Of Enzymatic And Nonenzymatic Isolation Methods For Endometrial Stem Cells, Polen Koçak, Serli̇ Cani̇kyan, Meli̇ke Batukan, Rukset Attar, Fi̇kretti̇n Şahi̇n, Di̇lek Telci̇ Jan 2016

Comparison Of Enzymatic And Nonenzymatic Isolation Methods For Endometrial Stem Cells, Polen Koçak, Serli̇ Cani̇kyan, Meli̇ke Batukan, Rukset Attar, Fi̇kretti̇n Şahi̇n, Di̇lek Telci̇

Turkish Journal of Biology

Human endometrial stem cells (hESCs) are mesenchymal stem cells, which are responsible for the monthly renewal of the basal layer of the human endometrium by facilitating stromal and vascular regeneration. In this study, hESCs were isolated by using three different isolation methods including nonenzymatic and enzymatic digestion with trypsin and collagenase type 1. To determine the efficiency of these three methods, cells were characterized using a cell proliferation assay and mesenchymal and hematopoietic stem cell markers. Our results demonstrate that although the nonenzymatic isolation method gave rise to hESCs that had a higher proliferative rate, the mesenchymal stem cell profiles …

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Analysis Of Global Micrornaome Profiles Of Caenorhabditis Elegans Oocytes And Early Embryos, Selen Güçlü Durgun, Ahmet Raşi̇t Öztürk, Arzu Atalay Jan 2016

Analysis Of Global Micrornaome Profiles Of Caenorhabditis Elegans Oocytes And Early Embryos, Selen Güçlü Durgun, Ahmet Raşi̇t Öztürk, Arzu Atalay

Turkish Journal of Biology

One of the most complex cell transformations in biology is the remodeling of a fertilized oocyte into a totipotent zygote. There is no transcription during this event, and therefore mRNAs and proteins accumulated in the oocyte during oogenesis are utilized until zygotic genome activation. In order to differentiate into somatic cells, the embryo must erase the totipotency signature coming from the oocyte cytoplasm in the somatic blastomeres. In this study, the microRNAome profiles of oocytes and early embryos before and after zygotic genome activation were identified. By using next-generation high-throughput pyrosequencing and miRNA microarray techniques, miRNAome profiles of Caenorhabditis elegans …

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Improving Nitrogen-Use And Radiation-Use Efficiencies Of C4 Summer Cerealsby Split Nitrogen Applications Under An Irrigated Arid Environment, Shakeel Ahmad, Hakoomat Ali, Umair Farooq, Shahzad Usman Khan, Atique-Ur Rehman, Naeem Sarwar, Ahmad Naeem Shahzad, Hülya Doğan, Shabbir Hussain, Muhammad Tauseef Sultan, Abdul Waheed, Muhammad Zia Ul Haq, Khadim Hussain, Muhammad Azam Khan Jan 2016

Improving Nitrogen-Use And Radiation-Use Efficiencies Of C4 Summer Cerealsby Split Nitrogen Applications Under An Irrigated Arid Environment, Shakeel Ahmad, Hakoomat Ali, Umair Farooq, Shahzad Usman Khan, Atique-Ur Rehman, Naeem Sarwar, Ahmad Naeem Shahzad, Hülya Doğan, Shabbir Hussain, Muhammad Tauseef Sultan, Abdul Waheed, Muhammad Zia Ul Haq, Khadim Hussain, Muhammad Azam Khan

Turkish Journal of Agriculture and Forestry

Increasing resource-use efficiency is of prime importance in sustainable agriculture. A field study was carried out to improve nitrogen-use efficiency (NUE) and radiation-use efficiency (RUE) of three C4 summer cereals, i.e. Maize, millet, and sorghum, under an irrigated arid environment. The results showed that among various cultivars of cereals, cultivars Pearl (maize), 18 BY (millet), and Jumbo (sorghum) produced the highest aboveground total dry matters and grain yields. The highest NUE and RUE were obtained by splitting the nitrogen dose 3 times, i.e. At sowing and at first and second irrigation. The NUE for maize, millet, and sorghum varied from …

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Use Of Black Locust/Poplar Wood As Filler In Thermoplastic Composites, Seyyed Khalil Hosseinihashemi, Sina Karimi, Ahmad Jahan Latibari, Abbas Tamjidi, Nadi̇r Ayrilmiş Jan 2016

Use Of Black Locust/Poplar Wood As Filler In Thermoplastic Composites, Seyyed Khalil Hosseinihashemi, Sina Karimi, Ahmad Jahan Latibari, Abbas Tamjidi, Nadi̇r Ayrilmiş

Turkish Journal of Agriculture and Forestry

Wood plastic composites (WPCs) were produced from different mixtures (up to 45% by weight) of poplar (Populus alba L.) and pruning branches of black locust (Robinia pseudoacacia) wood flours, polypropylene (53 wt.%), and maleic anhydride-grafted polypropylene (2 wt.%). Weight loss, flexural strength (MOR), flexural modulus (MOE), notched impact strength (IS), water absorption (WA), and thickness swelling (TS) of WPCs after 24 h of immersion in distilled water were determined before and after incubation with white-rot fungus (Trametes versicolor) for 7 weeks. The MOR and MOE increased with an increase in poplar wood in the WPC. The notched IS decreased with …

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Evaluation Of Effects Of Water-Saving Superabsorbent Polymer On Corn (Zea Mays L.)Yield And Phosphorus Fertilizer Efficiency, Adem Güneş, Nurgül Kitir, Meti̇n Turan, Erdal Elkoca, Ertan Yildirim, Nazmi̇ye Avci Jan 2016

Evaluation Of Effects Of Water-Saving Superabsorbent Polymer On Corn (Zea Mays L.)Yield And Phosphorus Fertilizer Efficiency, Adem Güneş, Nurgül Kitir, Meti̇n Turan, Erdal Elkoca, Ertan Yildirim, Nazmi̇ye Avci

Turkish Journal of Agriculture and Forestry

There is growing interest in using a reduced rate of mineral fertilizer along with water-saving superabsorbent polymer (WSAP) for field crop production in arid and semiarid regions of the world. The overall objective of this study was to evaluate the effects of hydrogel applications on the phosphorus fertilizer efficiency parameter, yield, and selected physiological properties of corn (Zea mays L.) grown at different levels of water deficiency in greenhouse conditions. The experimental design consisted of 3 completely randomized blocks in a factorial arrangement, with 9 hydrogel doses (0%, 0.01%, 0.02%, 0.04%, 0.08%, 0.12%, 0.2%, 0.4%, and 0.6%), 4 phosphorus fertilizer …

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Investigation Of Pollen Morphological Characteristics In Some Quince (Cydonia Oblonga Mill.) Cultivars, Aleksandar Radovic, Dragan Nikolic, Dragan Milatovic, Dejan Djurovic, Jugoslav Trajkovic Jan 2016

Investigation Of Pollen Morphological Characteristics In Some Quince (Cydonia Oblonga Mill.) Cultivars, Aleksandar Radovic, Dragan Nikolic, Dragan Milatovic, Dejan Djurovic, Jugoslav Trajkovic

Turkish Journal of Agriculture and Forestry

Morphological characterization of pollen grains is very important in the identification of individual species and cultivars of fruit trees, including quince. As material for these studies, the pollen of eight quince cultivars, Leskovacka, Vranjska, Morava, Pazardzijska, Hemus, Asenica, Portugal, and Triumph was used. During the 3-year study period (2010-2012), using scanning electron microscopy (SEM), the following characteristics were investigated: the size and shape of pollen grains (length, width, and length-to-width ratio), colpus length, colpus width, mesocolpium width, and characteristics of exine pattern [number of ridges per area (100 μm2) at the equatorial region of exine, ridge width, and furrow width]. …

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A Web-Based Decision Support System To Select Proper Machinery Size And Tractor Power, Çağdaş Ci̇velek, Sai̇t Muharrem Say Jan 2016

A Web-Based Decision Support System To Select Proper Machinery Size And Tractor Power, Çağdaş Ci̇velek, Sai̇t Muharrem Say

Turkish Journal of Agriculture and Forestry

One of the most important key factors for efficient and profitable agricultural production is agricultural mechanization. Since agricultural mechanization system expenses are nearly 30% of an agricultural enterprise investment, the mechanization system should be planned very carefully. Since internet technologies have spread into all areas, including agriculture, a web-based decision support system (DSS) was developed to plan an agricultural machinery system to be used in Turkey's farm enterprises. The developed DSS was written in PHP and the databases were created using the MySQL database administration system. Several tables to select proper machine size and tractor power, including tractor test report …

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Short-Term Changes Of Leaf Area Index, Light Transmission, And Gap In A Temperate Mixed Deciduous Forest Ecosystem In Bartın, Turkey, İlyas Bolat, Ömer Kara, Meli̇h Öztürk Jan 2016

Short-Term Changes Of Leaf Area Index, Light Transmission, And Gap In A Temperate Mixed Deciduous Forest Ecosystem In Bartın, Turkey, İlyas Bolat, Ömer Kara, Meli̇h Öztürk

Turkish Journal of Agriculture and Forestry

In this study, leaf area index (LAI), light transmission, and gap were estimated by using the hemispherical photograph analysis technique with Hemisfer software version 1.5.3 for a temperate mixed deciduous forest. The height of the overall vegetation in the stand ranged from 15 to 20 m, and the diameters of the trees in the stand at breast height varied between 14 and 28 cm. This study showed that the mean value of LAI increased by 4% in the 5-year period from 2007 to 2012. LAI was significantly (P < 0.05) greater in 2012 than in 2007, whereas the mean percentage of light transmission was significantly lower in 2012 than it was in 2007. In addition, there was a significant (P < 0.01) correlation between LAI and light transmission, and there was also a statistically significant correlation between the gap and light transmission (P < 0.05). According to long-term meteorological data (1982-2012), this study also demonstrated that the mean air temperature rose approximately 1.0 °C between 2007 and 2012. Consequently, this study indicated that LAI varies with respect to time and the increase of LAI leads to a decrease in light transmission. Additionally, the air temperature and precipitation have a significant influence on the LAI.

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Short-Term Effects Of Warming Treatment And Precipitation Manipulation On The Ecophysiological Responses Of Pinus Densiflora Seedlings, Soon Jin Yun, Saerom Han, Seung Hyun Han, Seongjun Kim, Guanlin Li, Minji Park, Yowhan Son Jan 2016

Short-Term Effects Of Warming Treatment And Precipitation Manipulation On The Ecophysiological Responses Of Pinus Densiflora Seedlings, Soon Jin Yun, Saerom Han, Seung Hyun Han, Seongjun Kim, Guanlin Li, Minji Park, Yowhan Son

Turkish Journal of Agriculture and Forestry

The aim of this study was to investigate the short-term effects of warming treatment and precipitation manipulation on the growth, photosynthetic rate, and chlorophyll content of Pinus densiflora seedlings based on a climate change scenario in Korea. Two-year-old P. densiflora seedlings were planted in a nursery in April 2013. The air temperature of warmed plots (W) was set to increase by 3 °C compared to control plots (C) using an infrared heater in May 2013. The three precipitation manipulations consisted of decreased precipitation using transparent panels (-30%; P-), increased precipitation using pumps and drip irrigation (+30%; P+), and a control …

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Diversity Pattern Among Agromorphological Traits Of The Swiss Chard(Beta Vulgaris L. Subsp. Vulgaris) Genetic Resources Of Turkey, Mehmet Kadri̇ Bozokalfa, Dursun Eşi̇yok, Tansel Kaygisiz Aşçioğul Jan 2016

Diversity Pattern Among Agromorphological Traits Of The Swiss Chard(Beta Vulgaris L. Subsp. Vulgaris) Genetic Resources Of Turkey, Mehmet Kadri̇ Bozokalfa, Dursun Eşi̇yok, Tansel Kaygisiz Aşçioğul

Turkish Journal of Agriculture and Forestry

Swiss chard (Beta vulgaris L. subsp. vulgaris) is a nutritionally rich leafy vegetable of moderate economic value. Despite being the first species among the genus Beta to be cultivated, knowledge regarding its biodiversity and agronomic and morphological properties is limited. The objective of this study was to evaluate the agromorphological characteristics of the Turkish Swiss chard genetic resources, and to determine their genetic relationships and diversity. To achieve this, a total of 52 Swiss chard accessions from a wide range of environmental and geographical origins in Turkey and two cultivars (one local and one foreign) were investigated. Fourteen qualitative and …

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Pathogenicity Of Selected Entomopathogenic Fungal Isolates Against The Oak Lace Bug, Corythucha Arcuata Say. (Hemiptera: Tingidae), Under Controlled Conditions, Emi̇ne Sönmez, Zi̇hni̇ Demi̇rbağ, İsmai̇l Demi̇r Jan 2016

Pathogenicity Of Selected Entomopathogenic Fungal Isolates Against The Oak Lace Bug, Corythucha Arcuata Say. (Hemiptera: Tingidae), Under Controlled Conditions, Emi̇ne Sönmez, Zi̇hni̇ Demi̇rbağ, İsmai̇l Demi̇r

Turkish Journal of Agriculture and Forestry

Corythucha arcuata (Say) (Hemiptera: Tingidae) is a pest of oaks that is highly distributed in several regions of the world, including North America, the Balkan Peninsula, Europe, and Turkey. In the present study, ten entomopathogenic fungi belonging to four different genera (Metarhizium (x4), Beauveria (x4), Isaria (x1), and Myriodontium (x1)) were tested against nymphs and adults of C. arcuata under laboratory conditions. Based on the initial screening studies, it was shown that all isolates were able to infect both nymph and adult individuals of the pest after application of 1 × 107 mL-1 conidial concentration. Among the tested isolates, Beauveria …

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Strain Identification And Sequence Variability Of Plum Pox Virus In Turkey, Kahraman Gürcan, Ahmet Ceylan Jan 2016

Strain Identification And Sequence Variability Of Plum Pox Virus In Turkey, Kahraman Gürcan, Ahmet Ceylan

Turkish Journal of Agriculture and Forestry

Plum pox virus (PPV) is the causal agent of sharka disease of stone fruit trees. Since the late 1960s, PPV infection has been reported in different regions of Turkey. In this study, we aim to discover PPV strains in infected regions and determine its genetic variability in Turkey. For this reason, 612 samples were collected from distant locations, where PPV was previously detected in most cases. First, PPV presence in the samples was tested with serological and molecular methods to confirm the disease. Then 314 positive samples were sequence analyzed at a 664-nucleotide length, including the P3-6K1 gene region, one …

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Cadmium Contents Of Soils And Durum And Bread Wheats On Harran Plain, Southeast Turkey, Asuman Yanardağ, Ahmet Ruhi Mermut, Angel Faz Cano, Dora Maria Carmona Garces, İbrahi̇m Hali̇l Yanardağ Jan 2016

Cadmium Contents Of Soils And Durum And Bread Wheats On Harran Plain, Southeast Turkey, Asuman Yanardağ, Ahmet Ruhi Mermut, Angel Faz Cano, Dora Maria Carmona Garces, İbrahi̇m Hali̇l Yanardağ

Turkish Journal of Agriculture and Forestry

Durum wheat (Triticum turgidum durum (Desf.) Husn.) is produced on a large scale in Turkey, northern Syria, Kazakhstan, Iran, southern Europe, and North America, and is widely used for making spaghetti, noodles, couscous, and flatbreads. Uptake of Cd by durum wheat species is well known. The objectives of this study were to determine the cadmium (Cd) level of the soils and durum and bread wheat grown on Harran Plain, southeast Turkey, and evaluate it in terms of food safety. Soil samples were taken from 16 selected grains, leaves, and roots of durum and bread wheats for analyses. The total Cd …

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Ultra-Thin Microfluidic Devices Built Via Thermal Lamination, Fernando Ontiveros, J Ryan Mcdowell Jan 2016

Ultra-Thin Microfluidic Devices Built Via Thermal Lamination, Fernando Ontiveros, J Ryan Mcdowell

Biology Faculty/Staff Publications

Widespread adoption of lab-on-a-chip technologies may be encouraged by the development of methods and devices that require minimal investment and expertise. Here we describe a type of device that makes exclusive use of consumer-grade components and equipment. The devices consist of as little as three layers of a polymer film, with microchannels shaped by an inexpensive craft cutter, and sealed by thermal lamination. Fabrication time is in the order of minutes, and the method does not require any prior training. To showcase the properties and demonstrate the versatility of the devices, we describe their use to generate fully biocompatible lipid-based …

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