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On The Use Of The Linear Interaction Energy Method To Predict Affinities Of Charged Aromatic Ammines To Naturally Occurring Clay Minerals, Milinda A. Samaraweera

Doctoral Dissertations

This study presents the use of the linear interaction energy (LIE) method as a predictive tool to approximate the free energies of sorption of organic cations to naturally occurring clay mineral montmorillonite. One objective of this thesis is to explore the applicability and the accuracy of LIE, originated in the biochemistry field, as a predictive tool to estimate the free energies of sorption of organic cations to naturally occurring aluminosilicates. For this purpose, a set of charged aromatic amines sorbing to a prototypical homoionic clay montmorillonite (MMT) with calcium ions were modeled using molecular dynamics (MD) simulations. As the LIE …

Flyer News, Vol. 63, No. 9 (Dec. 15, 2015), University Of Dayton

Flyer News

Student-run newspaper of the University of Dayton.

Evaluation Of Colorimetric Assays For Analyzing Reductively Methylated Proteins: Biases And Mechanistic Insights, Pamlea N. Brady, Megan A. Macnaughtan

Faculty Publications

© 2015 Elsevier Inc. Colorimetric protein assays, such as the Coomassie blue G-250 dye-binding (Bradford) and bicinchoninic acid (BCA) assays, are commonly used to quantify protein concentration. The accuracy of these assays depends on the amino acid composition. Because of the extensive use of reductive methylation in the study of proteins and the importance of biological methylation, it is necessary to evaluate the impact of lysyl methylation on the Bradford and BCA assays. Unmodified and reductively methylated proteins were analyzed using the absorbance at 280 nm to standardize the concentrations. Using model compounds, we demonstrate that the dimethylation of lysyl …

The Use Of Landsat 8 For Monitoring Of Fresh And Coastal Waters, Javier A. Concha

Theses

The most interaction between humankind and water occurs in coastal and inland waters (Case 2 waters) at a scale of tens or hundred of meters, but there is not yet an ocean color product (e.g. chlorophyll-a product) at this spatial scale. Landsat 8 could potentially address the remote sensing of these kinds of waters due to its improved features. This work presents an approach to obtain the color producing agents (CPAs) chlorophyll-a, colored dissolved organic material (CDOM) and suspended material (SM) from water bodies using Landsat 8. Adequate atmospheric correction becomes an important first step to accurately retrieving water parameters …

Gwu Student Receives Duke Energy Scholarship From North Carolina Independent Colleges & Universities, Office Of University Communications

Gardner-Webb NewsCenter Archive

Kyle Cooper, a Gardner-Webb University (Boiling Springs, N.C.) junior majoring in Biology, was selected to receive a Duke Energy Foundation Scholarship in the amount of $3,500 for the 2015-2016 academic year. Kyle is the son of Sherri Cooper of Gastonia, N.C., and Michael Ratliff of Hamlet, N.C. The Duke Energy Foundation contributed $80,500 in scholarship aid this year through the Independent College Fund of N.C., a division of North Carolina Independent Colleges and Universities (NCICU).

Ocean Acidification As One Of Multiple Stressors: Growth Response Of Thalassiosira Weissflogii (Diatom) Under Temperature And Light Stress, Uta Passow, Edward A. Laws

Faculty Publications

Future shifts in phytoplankton composition and productivity are anticipated given that continuing changes are expected in environmental conditions such as temperature, the partial pressure of CO2 (pCO2) and light climate, all of which regulate phytoplankton communities and their physiology through bottom-up control. Culture experiments revealed that future (elevated) pCO2 had no effect on Thalassiosira weissflogii in the absence of environmental stressors, whereas growth rates drastically decreased under future pCO2 when cells were grown under light and temperature stress. Reduction in growth rates and a smaller decline in cellular photosynthesis under high pCO2 were associated with 2- to 3-fold increases in …

Molecularly Targeted Nanoparticles For Modulation Of Inflammatory Mediators In Atherosclerosis, Rohun Udatta Palekar

McKelvey School of Engineering Graduate Student Theses & Dissertations

The enzyme thrombin has been demonstrated through experimental and clinical studies to play a crucial role in mediating both inflammation and thrombosis in atherosclerosis. The cellular effects of thrombin in promoting atherosclerosis involve the activation of signaling pathways that result in the secretion of a host of various chemokines, cytokines, cell adhesion molecules, etc. that promote vascular inflammation. Due in part to thrombin and other pro-atherogenic molecules, this prolonged inflammatory state in atherosclerosis results in the deterioration of the endothelium, increasing the risk of focal thrombosis. Current treatment strategies to address the role of thrombin in atherosclerosis, despite efficacy of …

No Ordinary Fish Tale: Working Toward A Transnational Solution To The Cod Crisis In The Gulf Of Maine, Michael Ruderman

Indiana Law Journal

In response to a National Oceanic and Atmospheric Administration (NOAA) survey that showed “record-low levels of abundance” of groundfish in the Gulf of Maine (“Gulf”), local fisherman Brian Pearce asserted: “It concerns [me] that what [NOAA is] saying and what we [the local fishermen] are seeing is such a contrast . . . . Who sees more fish in the ocean than the fishermen?” Despite Mr. Pearce’s skepticism, the state of the cod fishery in the Gulf of Maine—home to “critical” and “legendary" fishing grounds in Canadian and American territories—is, in fact, dire. According to the NOAA survey, conducted in …

Orange Is The New Equal Protection Violation: How Evidence-Based Sentencing Harms Male Offenders, Shaina D. Massie

William & Mary Bill of Rights Journal

No abstract provided.

Compositions Including Triciribine And One Or More Platinum Compounds And Methods Of Use Thereof, Jin Q. Cheng, Said M. Sebti

USF Patents

This application encompasses combination therapies including triciribine and related compounds and one or more platinum compounds and compositions with reduced toxicity for the treatment and prevention of tumors, cancer, and other disorders associated with abnormal cell proliferation.

Finding Optimal Brain Mappings Using Integer Linear Programming Solvers And Other Methods, Heriberto Flores

Honors Theses

No abstract provided.

Unh Announces New Dean Of Its Manchester Campus, Unh Communications And Public Affairs

UNH Today Archive

No abstract provided.

Collective Prey Capture By Juvenile Venus Flytraps (Dionaea Muscipula), Steven Rosen

Honors Theses

The Venus flytrap (Dionaea muscipula), first described by Charles Darwin, is a unique carnivorous plant which acquires prey using leaf blades modified into snap-traps. A recent study showed that prey capture by flytraps was not selective. With this study we examined prey capture rates further by analyzing D. muscipula traps less than 1 em in length to determine if juvenile flytraps differ from adults. Similar to the earlier findings, trap size appeared to play no role in prey capture success. This was likely due to the fact that 88% of all prey items recovered were smaller than the smallest collected …

Free Mate Choice Enhances Conservation Breeding In The Endangered Giant Panda, Meghan S. Martin-Wintle, David J. Shepherdson, Guiquan Zhang, Hemin Zhang, Desheng Li, Xiaoping Zhou, Rengui Li, Ronald R. Swaisgood

Biology Faculty Publications and Presentations

Conservation breeding programmes have become an increasingly important tool to save endangered species, yet despite the allocation of significant resources, efforts to create self-sustaining populations have met with limited success. The iconic giant panda (Ailuropoda melanoleuca) embodies the struggles associated with ex situ species conservation. Here we show that behavioural mate preferences in giant pandas predict reproductive outcomes. Giant pandas paired with preferred partners have significantly higher copulation and birth rates. Reproductive rates increase further when both partners show mutual preference for one another. If managers were to incorporate mate preferences more fully into breeding management, the production of giant …

Wildland Fire Deficit And Surplus In The Western United States, 1984-2012, Sean A. Parks, Carol Miller, Marc-Andrè Parisien, Lisa M. Holsinger, Solomon Z. Dobrowski, John Abatzoglou

Forest Management Faculty Publications

Wildland fire is an important disturbance agent in the western US and globally. However, the natural role of fire has been disrupted in many regions due to the influence of human activities, which have the potential to either exclude or promote fire, resulting in a "fire deficit" or "fire surplus," respectively. In this study, we developed a model of expected area burned for the western US as a function of climate from 1984 to 2012. We then quantified departures from expected area burned to identify geographic regions with fire deficit or surplus. We developed our model of area burned as …

The Bg News December 15, 2015, Bowling Green State University

BG News (Student Newspaper)

The BGSU campus student newspaper. December 15, 2015. Volume 95-Issue 33.

Novel Applications Of Electrostatic Precipitators In Coal - Biomass Combustion Systems, He Jing

McKelvey School of Engineering Graduate Student Theses & Dissertations

Pulverized coal combustion is an important source of electricity production worldwide. However, it is also a primary air pollution emission (particulate matters, mercury, etc.) source. Electrostatic precipitators (ESPs) are widely used in coal-fired power plants to control particulate matters. This dissertation contributes in the study of the pollution formation from coal combustion processes and pollution control based on ESPs in the following three aspects: (1) explore novel applications of ESPs in particulate matters and mercury removal; (2) develop and evaluate an compact electrostatic precipitator for sampling purpose, which can support offline fly ash particle analysis; (3) study the submicrometer particle …

Relating Neural Dynamics To Olfactory Coding And Behavior, Chao Li

McKelvey School of Engineering Graduate Student Theses & Dissertations

Sensory stimuli often evoke temporal patterns of spiking activity across a population of neurons in the early processing stages. What features of these spatiotemporal responses encode behaviorally relevant information, and how dynamic processing of sensory signals facilitates information processing are fundamental problems in sensory neuroscience that remain to be understood. In this thesis, I have investigated these issues using a relatively simple invertebrate model (locusts; Schistocerca americana).

In locusts, odorants are transduced into electrical signals by olfactory sensory neurons in the antenna and are subsequently relayed to the downstream neural circuit in the antennal lobe (analogous to the olfactory bulb …

Endangered Species, Endangered Treaties: Protecting Treaty Rights, Economic Development, And Tribal Consultation Under Secretarial Order 3206, Jeremy Wood

American Indian Law Journal

No abstract provided.

Engineering A Healthier Watershed: Middle School Students Use Engineering Design To Lessen The Impact Of Their Campus' Impervious Surfaces On Their Local Watershed, Elizabeth Claire Gardner

Dissertations and Theses

It is important that students understand not only how their local watershed functions, but also how it is being impacted by impervious surfaces. Additionally, students need experience exploring the scientific and engineering practices that are necessary for a strong STEM background. With this knowledge students can be empowered to tackle this real and local problem using engineering design, a powerful practice gaining momentum and clarity through its prominence in the recent Framework for K-12 Science Education. Twenty classes of suburban sixth-graders participated in a new five-week Watershed Engineering Design Unit taught by their regular science teachers. Students engaged in scientific …

Isn’T Citizen Science A Hoot? A Case-Study Exploring The Effectiveness Of Citizen Science As An Instrument To Teach The Nature Of Science Through A Local Nocturnal Owl-Monitoring Project, Tess Marie Kreofsky

Dissertations and Theses

Citizen science projects present a distinctive opportunity for professional and volunteer scientists to coordinate their efforts to gather unique sets of data that can benefit the scientific and local communities. These projects are assumed to be an effective educational tool to teach nature of science (NOS) to participants (Brossard, Lewenstein, Bonney, 2005). This case study evaluates the effectiveness of participation in a citizen science project as a way to learn about NOS. Through enhancement of the Tryon Creek Owl Monitoring Project the researcher reviewed the characteristics of a citizen science project that were thought to be necessary to impact the …

Deeply Rooted: The Story Of Congaree National Park, Taylor Karlin

Senior Theses

This photo-essay book was written to fulfill requirements for completion of a senior thesis project to graduate with honors from the South Carolina Honors College. Its purpose is to promote the enjoyment and preservation of the Congaree National Park by educating the public on the historical and ecological significance of the land and the many activities it has to offer. Despite its proximity to downtown Columbia, there remains a lack of public awareness about the park and the amazing activities and opportunities it has to offer. I have compiled information and pictures that will best depict the unique qualities of …

Leveraging Global Gene Expression Patterns To Predict Expression Of Unmeasured Genes, James Rudd, René A. Zelaya, Eugene Demidenko, Ellen L. Goode, Casey S. Greene S. Greene, Jennifer A. Doherty

Dartmouth Scholarship

BackgroundLarge collections of paraffin-embedded tissue represent a rich resource to test hypotheses based on gene expression patterns; however, measurement of genome-wide expression is cost-prohibitive on a large scale. Using the known expression correlation structure within a given disease type (in this case, high grade serous ovarian cancer; HGSC), we sought to identify reduced sets of directly measured (DM) genes which could accurately predict the expression of a maximized number of unmeasured genes.

Parn Deadenylase Is Involved In Mirna-Dependent Degradation Of Tp53 Mrna In Mammalian Cells, Xiaokan Zhang, Emral Devany, Michael R. Murphy, Galina Glazman, Mirjana Persaud, Frida E. Kleiman

Publications and Research

mRNA deadenylation is under the control of cis-acting regulatory elements, which include AU-rich elements (AREs) and microRNA (miRNA) targeting sites, within the 3′ untranslated region (3′ UTRs) of eukaryotic mRNAs. Deadenylases promote miRNA-induced mRNA decay through their interaction with miRNA-induced silencing complex (miRISC). However, the role of poly(A) specific ribonuclease (PARN) deadenylase in miRNA-dependent mRNA degradation has not been elucidated. Here, we present evidence that not only ARE- but also miRNA-mediated pathways are involved in PARN-mediated regulation of the steady state levels of TP53 mRNA, which encodes the tumor suppressor p53. Supporting this, Argonaute-2 (Ago-2), the core component of miRISC, …

A Critical Analysis Of Neural Buddhism's Explanation Of Moral Transformation, Jeffrey R. Dickson

Liberty Theological Review

As non-theistic arguments for morality become increasingly sophisticated and complex, they are harder to criticize without first admiring their skillful design and near-artistry. One such argument involves a relatively new innovation that is the child of naturalism and eastern philosophy—Neural Buddhism. Like two world-renowned designers collaborating on a new garment, Naturalism and Buddhism have come together in this distinct program to offer something inventive, especially in its explanation of moral transformation. However, this critical analysis will ultimately reveal that Neural Buddhism’s explanation of moral transformation is incapable of providing good answers to several compelling criticisms.

Using Landsat Tm Imagery To Monitor Vegetation Change Following Flow Restoration To The Lower Owens River, California, Lesley Crandell Bross

Dissertations and Theses

Rehabilitating river corridors to restore valuable riparian habitat consumes significant resources from both governments and private companies. Given these considerable expenditures, it is important to monitor the progress of such projects. This study evaluated the utility of using Landsat Thematic Mapper remotely-sensed data from 2002 and 2009 to monitor vegetation change induced by instream flow restoration to the Lower Owens River in central California. This study compared the results of an unsupervised classification with an NDVI threshold classification to appraise the resources required and effectiveness of each analysis method. The results were inspected by creating standard remote sensing accuracy error …

Where Is The Warfare? The Impact Of Sola Scriptura On Science And Religion Dialogue, William James Richardson

Senior Theses

I have two aims with the publication of this thesis. The first is to contribute to the recent scholarly work that seeks to discredit the popular, yet fallacious, warfare model of science and religion. A nuanced investigation shows that the warfare evident in popular discourse cannot easily be attributed to a conflict between the essence of science and religion. Rather “science” and “religion” are interpreted as something else entirely. The New Atheists equate science with scientism, and religion is often associated with the Biblical inerrantism of many Protestant Christians. Both ideologies are grounded in an empiricist epistemological framework founded by …

Characterizing The Role Of Sialylated Milk Glycans And The Infant Gut Microbiota In Growth And Metabolism, Mark Richard Charbonneau

Arts & Sciences Graduate Student Theses and Dissertations

Undernutrition is a pressing and pervasive global health problem. The pathogenesis of this disease remains unclear, but epidemiologic studies indicate that it is not due to food insecurity alone. Moreover, current therapeutic interventions have limited efficacy in preventing or ameliorating the long-term sequelae of undernutrition, including stunting and cognitive deficits. Recent culture-independent studies have demonstrated that the normal postnatal pattern of gut microbiota development is disrupted in children with undernutrition, leading to the proposal that perturbations in gut microbiota development impairs healthy growth of the host. Human breast milk contains a diverse repertoire of free and conjugated human milk oligosaccharides …

The Identification Of Alkaloid Pathway Genes From Non-Model Plant Species In The Amaryllidaceae, Matthew B. Kilgore

Arts & Sciences Graduate Student Theses and Dissertations

Secondary metabolites are often restricted in their distribution to different groups of organisms. For this reason, attempts to study these often useful and interesting products of metabolism require an ability to work in a diversity of non-model species. Methods for gene discovery with low investment and high efficiency are needed to effectively identify the biosynthetic genes in these diverse pathways. During this work, a workflow for efficiently identifying biosynthetic genes was developed and applied to Amaryllidaceae alkaloid biosynthesis. Genes discovered during this work include a norbelladine 4’-O-methyltransferase, a cytochrome P450 capable of phenol-phenol coupling 4’-O-methylnorbelladine to noroxomaritidine, and a short-chain …

Endogenous Protection In Subarachnoid Hemorrhage, Eric Milner

Arts & Sciences Graduate Student Theses and Dissertations

Vasospasm-induced delayed cerebral ischemia (DCI) remains a major source of morbidity in patients with aneurysmal subarachnoid hemorrhage (SAH). Moreover, cognitive dysfunction is the primary driver of poor long-term outcome in SAH survivors; modeling such deficits preclinically is thus key for mechanistic and translational investigation. We hypothesized that activating innate neurovascular protective mechanisms by conditioning may represent a novel therapeutic approach against SAH-induced DCI, short-term, neurological deficits, and long-term neurocognitive deficits; and, secondarily, that the neurovascular protection it provides is mediated by endothelial nitric oxide synthase (eNOS) and hypoxia-inducible factor 1α (HIF-1α).In Experiment 1, wild-type C57BL/6 mice were subjected to hypoxic …