Digital Commons Network^™

Implementation Of Collaborative Learning As A High-Impact Practice In A Natural Resources Management Section Of Freshman Seminar, Matthew W. Mcbroom, Steven H. Bullard, David Kulhavy, Daniel R. Unger

Faculty Publications

Forestry and environmental science students enrolled in a one credit hour freshman seminar course participated in a land management evaluation and water quality sampling excursion using canoes and water sampling equipment. The purpose of this assessment was to engage students with hands-on, field based education in order to foster connections to their chosen profession and the resource. This culminated in poster symposium of the experience. Broad competency areas for high impact practices in natural resource management were emphasized for learning. Students were engaged in the exercise and commented that the project helped them develop a sense of place and forming …

Assessment Of Artificial Mirna Architectures For Higher Knockdown Efficiencies Without The Undesired Effects In Mice., Hiromi Miura, Hidetoshi Inoko, Masafumi Tanaka, Hirofumi Nakaoka, Minoru Kimura, Channabasavaiah B. Gurumurthy, Masahiro Sato, Masato Ohtsuka

Journal Articles: Genetics, Cell Biology & Anatomy

RNAi-based strategies have been used for hypomorphic analyses. However, there are technical challenges to achieve robust, reproducible knockdown effect. Here we examined the artificial microRNA (amiRNA) architectures that could provide higher knockdown efficiencies. Using transient and stable transfection assays in cells, we found that simple amiRNA-expression cassettes, that did not contain a marker gene (-MG), displayed higher amiRNA expression and more efficient knockdown than those that contained a marker gene (+MG). Further, we tested this phenomenon in vivo, by analyzing amiRNA-expressing mice that were produced by the pronuclear injection-based targeted transgenesis (PITT) method. While we observed significant silencing of the …

3d Mr Ventricle Segmentation In Pre-Term Infants With Post-Hemorrhagic Ventricle Dilation, Wu Qiu, Jing Yuan, Jessica Kishimoto, Yimin Chen

Anatomy and Cell Biology Publications

Intraventricular hemorrhage (IVH) or bleed within the brain is a common condition among pre-term infants that occurs in very low birth weight preterm neonates. The prognosis is further worsened by the development of progressive ventricular dilatation, i.e., post-hemorrhagic ventricle dilation (PHVD), which occurs in 10-30% of IVH patients. In practice, predicting PHVD accurately and determining if that specific patient with ventricular dilatation requires the ability to measure accurately ventricular volume. While monitoring of PHVD in infants is typically done by repeated US and not MRI, once the patient has been treated, the follow-up over the lifetime of the patient is …

Quantification Of Cerebral Ventricle Volume Change Of Preterm Neonates Using 3d Ultrasound Images, Yimin Chen, Jessica Kishimoto, Wu Qiu, Sandrine De Ribaupierre, Aaron Fenster, Bernard Chiu

Anatomy and Cell Biology Publications

Intraventricular hemorrhage (IVH) is a major cause of brain injury in preterm neonates. Quantitative measurement of ventricular dilation or shrinkage is important for monitoring patients and in evaluation of treatment options. 3D ultrasound (US) has been used to monitor the ventricle volume as a biomarker for ventricular dilation. However, volumetric quantification does not provide information as to where dilation occurs. The location where dilation occurs may be related to specific neurological problems later in life. For example, posterior horn enlargement, with thinning of the corpus callosum and parietal white matter fibres, could be linked to poor visuo-spatial abilities seen in …

Temperamental Variation In Learned Irrelevance In Humans, Aleksandra Gruszka, Adrian M. Owen

Anatomy and Cell Biology Publications

BACKGROUND Learned irrelevance (LIRR) represents one of the mechanisms of attentional set-shifting and refers to the inability to attend to, or to learn about, any aspect of a stimulus previously experienced as irrelevant. Although it has been extensively studied in the context of clinical populations, not much is known about LIRR effects in relation to normal variation in individual differences. The present study was designed to assess how temperamental factors may modulate LIRR. PARTICIPANTS AND PROCEDURES Sixty-eight healthy volunteers performed a visual discrimination learning task modelled after Wisconsin Card Sorting Test. To test the susceptibility to learned irrelevance, participants were …

Do Political Attitudes And Religiosity Share A Genetic Path?, Amanda Friesen, Aleksander Ksiazkiewicz

Political Science Publications

Social scientists have long recognized and sought to explain a connection between religious and political beliefs. Our research challenges the prevalent view that religion and politics constitute separate but related belief sets with a conceptual model that suggests the correlation between the two may be partially explained by an underlying psychological construct reflecting first principle beliefs on social organization. Moreover, we also push this challenge further by considering whether part of the relationship between political and religious beliefs is the result of shared genetic influences, which would suggest that a shared biological predisposition, or set of biological predispositions, underlies these …

Nfkb1 Activation By The E26 Transformation-Specific Transcription Factors Pu.1 And Spi-B Promotes Toll-Like Receptor-Mediated Splenic B Cell Proliferation, Stephen K.H. Li, Ali K. Abbas, Lauren A. Solomon, Gaëlle M.N. Groux, Rodney P. Dekoter

Paediatrics Publications

Generation of antibodies against T-independent and T-dependent antigens requires Toll-like receptor (TLR) engagement on B cells for efficient responses. However, the regulation of TLR expression and responses in B cells is not well understood. PU.1 and Spi-B (encoded by Sfpi1 and Spib, respectively) are transcription factors of the E26 transformation-specific (ETS) family and are important for B cell development and function. It was found that B cells from mice knocked out for Spi-B and heterozygous for PU.1 (Sfpi1^+/- Spib^-/- [PUB] mice) proliferated poorly in response to TLR ligands compared to wild-type (WT) B cells. The NF-κB family member …

Attenuation Of Oxidative Stress In Hek 293 Cells By The Tcm Constituents Schisanhenol, Baicalein, Resveratrol Or Crocetin And Two Defined Mixtures, John R. Bend, Xue Yan Xia, Daofeng Chen, Abudi Awaysheh, Andrea Lo, Michael J. Rieder, R. Jane Rylett

Paediatrics Publications

PURPOSE: Our working hypothesis is that single bioactive phytochemicals with antioxidant properties that are important constituents of Traditional Chinese Medicine (TCM) and their defined mixtures have potential as chemoprotective agents for chronic conditions characterized by oxidative and nitrosative stress, including Alzheimer’s. Here we evaluate the ability of baicalein, crocetin, trans-resveratrol or schisanhenol and two defined mixtures of these TCM phytochemicals to attenuate the toxicity resulting from exposure to cell permeant t-butyl hydroperoxide (tBPH) in wild-type and bioengineered (to express choline acetyltransferase) HEK 293 cells. METHODS: Endpoints of tBHP-initiated oxidative and nitrosative stress in both types of HEK 293 cells and …

Cell Regulation By Phosphotyrosine-Targeted Ubiquitin Ligases, Jonathan A. Cooper, Tomonori Kaneko, Shawn S.C. Li

Paediatrics Publications

Three classes of E3 ubiquitin ligases, members of the Cbl, Hakai, and SOCS-Cul5-RING ligase families, stimulate the ubiquitination of phosphotyrosine-containing proteins, including receptor and nonreceptor tyrosine kinases and their phosphorylated substrates. Because ubiquitination frequently routes proteins for degradation by the lysosome or proteasome, these E3 ligases are able to potently inhibit tyrosine kinase signaling. Their loss or mutational inactivation can contribute to cancer, autoimmunity, or endocrine disorders, such as diabetes. However, these ligases also have biological functions that are independent of their ubiquitination activity. Here we review relevant literature and then focus on more-recent developments in understanding the structures, substrates, …

Reversing Chromatin Accessibility Differences That Distinguish Homologous Mitotic Metaphase Chromosomes., Wahab A Khan, Peter K Rogan, Joan H M Knoll

Biochemistry Publications

BACKGROUND: Chromatin-modifying reagents that alter histone associating proteins, DNA conformation or its sequence are well established strategies for studying chromatin structure in interphase (G1, S, G2). Little is known about how these compounds act during metaphase. We assessed the effects of these reagents at genomic loci that show reproducible, non-random differences in accessibility to chromatin that distinguish homologous targets by single copy DNA probe fluorescence in situ hybridization (scFISH). By super-resolution 3-D structured illumination microscopy (3D-SIM) and other criteria, the differences correspond to 'differential accessibility' (DA) to these chromosomal regions. At these chromosomal loci, DA of the same homologous chromosome …

The Relative Influence Of Habitat Amount And Configuration On Genetic Structure Across Multiple Spatial Scales, Katie L Millette, Nusha Keyghobadi

Biology Publications

Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear …

High-Field Functional Imaging Of Pitch Processing In Auditory Cortex Of The Cat., Blake E. Butler, Amee J Hall, Stephen G Lomber

Brain and Mind Institute Researchers' Publications

The perception of pitch is a widely studied and hotly debated topic in human hearing. Many of these studies combine functional imaging techniques with stimuli designed to disambiguate the percept of pitch from frequency information present in the stimulus. While useful in identifying potential "pitch centres" in cortex, the existence of truly pitch-responsive neurons requires single neuron-level measures that can only be undertaken in animal models. While a number of animals have been shown to be sensitive to pitch, few studies have addressed the location of cortical generators of pitch percepts in non-human models. The current study uses high-field functional …

Impact Of Problem-Based Learning On Engineering Student Curiosity Development, Shannon M. Sipes

All-Inclusive List of Electronic Theses and Dissertations

Curiosity is a necessary component to intellectual growth (Engel, 2009) and fundamental to learning (Schmitt & Lahroodi, 2008), but it is unclear how to purposefully grow an individuals curiosity (Smith, 2011). Therefore, the purpose of this quantitative study was to examine the relationship between problem-based learning and curiosity in engineeringEducation. Results from a series of regression analyses did not support a predictive relationship between problem-based learning and curiosity. Further data analysis suggest problem-based learning environment should be a categorical rather than continuous variable.

Color And Size Preference In Guppy Mate Choice, Kate Bushman, Sydney Call, Lindsey Hansen

Biology Posters

No abstract provided.

The Bachelorette: Guppy Edition, Kailey Allen, Katie Pontsler, Lynnessa Zika, Jessica Gutierrez

Biology Posters

No abstract provided.

Research & Development Internship At Usana Health Sciences Inc., Nick Noyce

Biology Posters

No abstract provided.

The Foibles Of Greed, R. Bahruth

Literacy, Language, and Culture Faculty Publications and Presentations

Once upon a time, a crude and obnoxious big dog roamed the earth. His parents, Conformity and Mediocrity, named him Pearson. They were never really in love, as the passionless can hardly be, but they knew the biological mechanics required, and their usual habit of masturbation would not lead to procreation. So they went through the motions and generated several offspring, all rotten fruit of their loins. Pearson stomped around taking anything he wanted as he bullied smaller dogs into submission. He thought very highly of himself, even though “thought” is a generous depiction of his greedy, grubby ways.

2015 Annual Report: Effects Of Pinyon Juniper Removal On Greater Sage-Grouse (Centrocercus Urophasianus) Habitat-Use And Vital Ranges In Northwestern Utah, C. Sanford, Terry A. Messmer

Wildland Resources Faculty Publications

No abstract provided.

Synthesis And Biological Evaluation Of Nitrile-Based Inhibitors Of Cysteine Proteases Caged With Ruthenium Complexes, Rajgopal Sharma

Wayne State University Dissertations

Light activated compounds can be used as tools for understanding and solving numerous biological problems. This dissertation focuses on developing ruthenium-based photocages for caging nitrile-based cysteine protease inhibitors. Four research areas pertaining to this dissertation, i) metals in medicine, ii) photocages in biological applications, iii) photodynamic therapy and iv) cysteine cathepsin proteases were briefly surveyed in the introductory chapter. Next, RuII(bpy)2 group was utilized for synthesizing nitrile-based caged CTSK and CTSB inhibitors. Light activated release of inhibitors, followed by toxicity and stability data were studied. Cathepsin enzyme activity inhibition in 2D and 3D assays were established. This work showcased the …

A Story Of Marguerite: A Tale About Panis, Case Comment, And Social History, Signa A. Daum Shanks

Osgoode Legal Studies Research Paper Series

Those interested in social history contend that social norms deserve attention due to how they impact and are affected by historical events. This subfield has contributed significantly to how larger historical mosaics are understood, and how themes specific to marginalized groups are appreciated today. By presenting the story of enslaved Indigenous woman in New France who was the first Indigenous civil litigant in Canadian history, and focusing on her representation in the colonial legal system, a number of themes emerge. Canada’s history of slavery becomes better understood, and in so doing, a challenge to social historians is presented. By examining …

U.S. Crop Yields Redux: Weather Effects Versus Human Inputs, Federico Trindade

Department of Agricultural Economics: Faculty Publications

Agriculture is a resource-intensive activity. It currently uses a substantial portion of the Earth’s natural resources: crop production, pasture and livestock grazing systems occupy around 40% of total land area, nitrogen fertilizer applied to agricultural land comprises more than half of the global reactive nitrogen attributable to human activity and agricultural production consumes more fresh water than any other human activity since it accounts for 80% of all freshwater consumption (Cassman 2003). Water is one of the key determinants of agricultural land productivity. Adequate water supply to crops is essential to achieve maximum yield and greater stability, enabling also greater …

Salamander Monitoring Studies, Harry Tiebout

Gordon Natural Area Herpetological Studies Documents

No abstract provided.

Proceedings Of The 2015 Midsouth Computational Biology And Bioinformatics Society (Mcbios) Conference, Jonathan D. Wren, Shraddha Thakkar, Ramin Homayouni, Donald J. Johann, Mikhail G. Dozmorov

Biostatistics Publications

No abstract provided.

Penalized Ordinal Regression Methods For Predicting Stage Of Cancer In High-Dimensional Covariate Spaces, Amanda Elswick Gentry, Colleen K. Jackson-Cook, Debra E. Lyon, Kellie J. Archer

Biostatistics Publications

The pathological description of the stage of a tumor is an important clinical designation and is considered, like many other forms of biomedical data, an ordinal outcome. Currently, statistical methods for predicting an ordinal outcome using clinical, demographic, and high-dimensional correlated features are lacking. In this paper, we propose a method that fits an ordinal response model to predict an ordinal outcome for high-dimensional covariate spaces. Our method penalizes some covariates (high-throughput genomic features) without penalizing others (such as demographic and/or clinical covariates). We demonstrate the application of our method to predict the stage of breast cancer. In our model, …

Generalized Monotone Incremental Forward Stagewise Method For Modeling Count Data: Application Predicting Micronuclei Frequency, Mateusz Makowski, Kellie J. Archer

Biostatistics Publications

The cytokinesis-block micronucleus (CBMN) assay can be used to quantify micronucleus (MN) formation, the outcome measured being MN frequency. MN frequency has been shown to be both an accurate measure of chromosomal instability/DNA damage and a risk factor for cancer. Similarly, the Agilent 4×44k human oligonucleotide microarray can be used to quantify gene expression changes. Despite the existence of accepted methodologies to quantify both MN frequency and gene expression, very little is known about the association between the two. In modeling our count outcome (MN frequency) using gene expression levels from the high-throughput assay as our predictor variables, there are …

Identifying Molecular Features Associated With Psychoneurological Symptoms In Women With Breast Cancer Using Multivariate Mixed Models, Qing Zhou, Colleen Jackson-Cook, Debra Lyon, Robert Perera, Kellie Archer

Biostatistics Publications

Breast cancer (BC) is the second most common cancer among women. Research shows many women with BC experience anxiety, depression, and stress (ADS). Epigenetics has recently emerged as a potential mechanism for the development of depression.1 Although there are growing numbers of research studies indicating that epigenetic changes are associated with ADS, there is currently no evidence that this association is present in women with BC. The goal of this study was to identify high-throughput methylation sites (CpG sites) that are associated with three psychoneurological symptoms (ADS) in women with BC. Traditionally, univariate models have been used to examine …

Computer Simulation, Bioinformatics, And Statistical Analysis Of Cancer Data And Processes, Kellie J. Archer, Kevin Dobbin, Swati Biswas, Roger S. Day, David C. Wheeler, Hao Wu

Biostatistics Publications

No abstract provided.

Pdgfrα Signaling Drives Adipose Tissue Fibrosis By Targeting Progenitor Cell Plasticity, Tomoaki Iwayama, Cameron Steele, Longbiao Yao, Mikhail G. Dozmorov, Dimitris Karamichos, Jonathan D. Wren, Lorin E. Olson

Biostatistics Publications

Fibrosis is a common disease process in which profibrotic cells disturb organ function by secreting disorganized extracellular matrix (ECM). Adipose tissue fibrosis occurs during obesity and is associated with metabolic dysfunction, but how profibrotic cells originate is still being elucidated. Here, we use a developmental model to investigate perivascular cells in white adipose tissue (WAT) and their potential to cause organ fibrosis. We show that a Nestin-Cre transgene targets perivascular cells (adventitial cells and pericyte-like cells) in WAT, and Nestin-GFP specifically labels pericyte-like cells. Activation of PDGFRα signaling in perivascular cells causes them to transition into ECM-synthesizing profibrotic cells. Before …

Analysis Of Environmental Chemical Mixtures And Non-Hodgkin Lymphoma Risk In The Nci-Seer Nhl Study, Jenna Czarnota, Chris Gennings, Joanne S. Colt, Anneclaire J. De Roos, James R. Cerhan, Richard K. Severson, Patricia Hartge, Mary H. Ward, David C. Wheeler

Biostatistics Publications

Background: There are several suspected environmental risk factors for non-Hodgkin lymphoma (NHL). The associations between NHL and environmental chemical exposures have typically been evaluated for individual chemicals (i.e., one-by-one).

Objectives: We determined the association between a mixture of 27 correlated chemicals measured in house dust and NHL risk.

Methods: We conducted a population-based case–control study of NHL in four National Cancer Institute–Surveillance, Epidemiology, and End Results centers—Detroit, Michigan; Iowa; Los Angeles County, California; and Seattle, Washington—from 1998 to 2000. We used weighted quantile sum (WQS) regression to model the association of a mixture of chemicals and risk of NHL. The …

B-Cell And Monocyte Contribution To Systemic Lupus Erythematosus Identified By Cell-Type-Specific Differential Expression Analysis In Rna-Seq Data, Mikhail G. Dozmorov, Nicolas Dominguez, Krista Bean, Susan R. Macwana, Virginia Roberts, Edmund Glass, Judith A. James, Joel M. Guthridge

Biostatistics Publications

Systemic lupus erythematosus (SLE) is an autoimmune disease characterized by complex interplay among immune cell types. SLE activity is experimentally assessed by several blood tests, including gene expression profiling of heterogeneous populations of cells in peripheral blood. To better understand the contribution of different cell types in SLE pathogenesis, we applied the two methods in cell-type-specific differential expression analysis, csSAM and DSection, to identify cell-type-specific gene expression differences in heterogeneous gene expression measures obtained using RNA-seq technology. We identified B-cell-, monocyte-, and neutrophil-specific gene expression differences. Immunoglobulin-coding gene expression was altered in B-cells, while a ribosomal signature was prominent in …