Digital Commons Network^™

El Niño-Southern Oscillation Effect On A Fire Regime In Northeastern Mexico Has Changed Over Time, Larissa L. Yocom Kent, Peter Z. Fule, Peter M. Brown, Julian Cerano, Jose Villanueva-Diaz, Donald A. Falk, Eladio Cornejo-Oviedo

Wildland Resources Faculty Publications

The El Niño Southern Oscillation (ENSO) is a climate-forcing mechanism that has been shown to affect precipitation and the occurrence of wildfires in many parts of the world. In the southern United States and northern Mexico, warm events (El Niño) are associated with moist winter conditions and fewer fires, while cool events (La Niña) tend to favor dry winters and more fires. We tested this relationship in a region of northeastern Mexico by characterizing the historical fire regime and climatic influences. Fire regimes were reconstructed from fire-scar samples collected from 100 trees in three high-elevation sites on Peña Nevada in …

An Antimicrobial Peptide Regulates Tumor-Associated Macrophage Trafficking Via The Chemokine Receptor Ccr2, A Model For Tumorigenesis, Ge Jin, Hameem I. Kawsar, Stanley A. Hirsch, Chun Zeng, Xun Jia, Zhimin Feng, Santosh K. Ghosh, Qing Yin Zheng, Aimin Zhou, Thomas M. Mcintyre, Aaron Weinberg

Chemistry Faculty Publications

Background: Tumor-associated macrophages (TAMs) constitute a significant part of infiltrating inflammatory cells that are frequently correlated with progression and poor prognosis of a variety of cancers. Tumor cell-produced human β-defensin-3 (hBD-3) has been associated with TAM trafficking in oral cancer; however, its involvement in tumor-related inflammatory processes remains largely unknown. Methodology: The relationship between hBD-3, monocyte chemoattractant protein-1 (MCP-1), TAMs, and CCR2 was examined using immunofluorescence microscopy in normal and oral carcinoma in situ biopsy specimens. The ability of hBD-3 to chemoattract host macrophages in vivo using a nude mouse model and analysis of hBD-3 on monocytic cell migration in …

A Comparison Of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density In The Florida Current Off Fort Lauderdale, Florida, Jessica L. Bostock

HCNSO Student Theses and Dissertations

Copepods, minute crustaceans, are vital constituents of marine food web dynamics in tropical ecosystems. Ecologically, copepods provide the link between primary production and tertiary consumers. Changes in population structure and densities may impact ecosystem stability and production on small to large spatial scales. The present study examined the influence of the Florida Current on copepod population densities off the coast of Fort Lauderdale, Florida due to limited data in the area. Samples were collected during February and July 2007 at two locations, Stations A and B. Station A, dependent on current dynamics, fluctuated between the most western boundary and the …

Notation For Symmetric Images, Jeffery Bowen, Heidi Burgiel

Bridgewater Review

No abstract provided.

Physiologically Based Pharmacokinetics Of Molecular Imaging Nanoparticles For Mrna Detection Determined In Tumor-Bearing Mice., Armin W Opitz, Eric Wickstrom, Mathew L Thakur, Norman J Wagner

Kimmel Cancer Center Faculty Papers

Disease detection and management might benefit from external imaging of disease gene mRNAs. Previously we designed molecular imaging nanoparticles (MINs) based on peptide nucleic acids complementary to cancer gene mRNAs. The MINs included contrast agents and analogs of insulin-like growth factor 1 (IGF-1). Analysis of MIN tumor uptake data showed stronger binding in tumors than in surrounding tissues. We hypothesized that MINs with an IGF-1 analog stay in circulation by binding to IGF-binding proteins. To test that hypothesis, we fit the tissue distribution results of several MINs in xenograft-bearing mice to a physiological pharmacokinetics model. Fitting experimental tissue distribution data …

Orcutt Area Site Alternative Design Proposal, Julie Epshteyn, Maria Lusherovich

City and Regional Planning

No abstract provided.

Foothill Corridor Plan, Jordan Smith, Alex Padilla

City and Regional Planning

No abstract provided.

West Coast Olympic Village, Kelly Mcgrane, Andrew Myers, Drew Poulter

City and Regional Planning

No abstract provided.

Orcutt Area Artists Village, Claire Fliesler, Monica Kittinger

City and Regional Planning

No abstract provided.

Orcutt Area Specific Plan Mixed Use Alternative, Tim Beuchat, Kelsey Farwell

City and Regional Planning

No abstract provided.

Neural Substrates Of Reliability-Weighted Visual-Tactile Multisensory Integration, Michael S. Beauchamp, Siavash Pasalar, Tony Ro

Publications and Research

As sensory systems deteriorate in aging or disease, the brain must relearn the appropriate weights to assign each modality during multisensory integration. Using blood-oxygen level dependent functional magnetic resonance imaging of human subjects, we tested a model for the neural mechanisms of sensory weighting, termed “weighted connections.” This model holds that the connection weights between early and late areas vary depending on the reliability of the modality, independent of the level of early sensory cortex activity. When subjects detected viewed and felt touches to the hand, a network of brain areas was active, including visual areas in lateral occipital cortex, …

Updating The Laboratory Notebook: Electronic Documentation Software In Teaching And Research, Zhaohua Dai, Dan Strahs

Cornerstone 3 Reports : Interdisciplinary Informatics

No abstract provided.

Impact Of Preferential Flow Paths On Alluvial Groundwater Flow Patterns And Phosphorus Transport, Derek M. Heeren, Ronald B. Miller, Garey A. Fox, Daniel E. Storm, Aaron R. Mittelstet, Chad J. Penn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

While surface runoff is considered to be the primary transport mechanism for phosphorus (P), subsurface transport through coarse subsoil to gravel bed streams may be significant and represent a source of P not alleviated by current conservation practices (e.g., riparian buffers). Previous research has documented P transport in a preferential flow path (PFP) identified as a buried gravel bar. It is hypothesized that PFPs, if connected to the soil surface, provide a rapid and efficient method of transporting P, and that these alluvial features are transient storage zones for nutrients, acting as a sink during high flow and a source …

Seed Production And Maturation Of The Western Prairie Fringed Orchid, Bonnie Warner Alexander, Donald Kirby, Mario Biondini, Edward Dekeyser

The Prairie Naturalist

A population of threatened western prairie fringed orchid (Platanthera praeclara) was selected in 2004 on the Sheyenne National Grassland in southeastern North Dakota to study seed production and maturation for future use in population viability modeling. We randomly collected 30 seed capsules from the population under a permit from the U.S. Fish and Wildlife Service to: 1) identify capsule parameters that might be correlated with seed number and viability, 2) estimate an appropriate sample size to obtain accurate seed production estimates, 3) quantify seed production and viability per seed capsule, and 4) document temporal patterns in seed embryo …

Cattle Grazing Reduces Survival And Reproduction Of The Western Prairie Fringed Orchid, Bonnie Warner Alexander, Donald Kirby, Mario Biondini, Edward Dekeyser

The Prairie Naturalist

QuantifYing impacts of livestock grazing and prairie management strategies on the threatened western prairie' fringed orchid (Platanthera praeclara) is difficult due to the erratic appearance of the orchid above-ground. We monitored above-ground survival of orchids from flowering to mature seed capsule production, comparing plant height, flower numbers, and seed capsule numbers from 2002-2004 in rotationally grazed pastures and non-grazed sites. Orchid survival differed significantly between grazed and non-grazed pastures, with the proportion of plants surviving from flower to capsule production consistently lower in grazed pastures. Mean orchid survival in grazed and non-grazed areas was 40% and 87%, respectively. …

The Prairie Naturalist, Volume 42, No. 1/2 June 2010, The Great Plains Natural Science Society

The Prairie Naturalist

CHANNEL CATFISH DIETS INCLUDE SUBSTANTIAL VEGETATION IN A MISSOURI RIVER RESERVOIR • J. D. Dagel, M. R. Wuellner, and D. W. Willis

USE OF LATE SEASON STANDING CORN BY FEMALE WHITE-TAILED DEER IN THE NORTHERN GREAT PLAINS DURING A MILD WINTER • T. W. Grovenburg, C. N. Jacques, C. C. Swanson, R. W. Klaver, and J. A. Jenks

COMPARISON OF TWO ZOOPLANKTON SAMPLING GEARS IN SHALLOW, HOMOGENOUS LAKES • M. E. Livings, C. W. Schoenebeck, and M. L. Brown

VEGETATION TRENDS ON A WASTE ROCK REPOSITORY CAP IN THE NORTHERN BLACK HILLS • A. C. Korth, G. E. Larson, L. …

Channel Catfish Diets Include Substantial Vegetation In A Missouri River Reservoir, Jonah D. Dagel, Melissa R. Wuellner, David W. Willis

The Prairie Naturalist

Channel catfish (Ictalurus punctatus) are native to Lake Sharpe, a Missouri River mainstem reservoir, and are common in angler catches. Channel catfish growth has declined since the formation of the reservoir in 1963. Mean lengths at time of capture for channel catfish ages 9, 10, II, and 12 have decreased by 69, 55, 115, and 21S mm, respectively, since impoundment. The objective of this study was to document monthly food habits of channel catfish throughout the growing season (May-August) in Lake Sharpe to assess potential effects of diet on growth. Although channel catfish consumed both macro invertebrates and …

Observations Of Little Blue Herons Nesting In North Dakota, And An Instance Of Probable Natural Hybridization Between A Little Blue Heron And A Cattle Egret, Alisa J. Bartos, Lawrence Igl, Marsha A. Sovada

The Prairie Naturalist

The little blue heron (Egretta caerulea) is native to North America and most commonly breeds along the coast of the southeastern United States and the Gulf of Mexico through Central America and into South America (Rodgers and Smith 1995). In North America, little blue herons rarely nest outside their coastal range. However, nesting has been documented at several locations in the northern plains including Brown, Kingsbury, and Charles Mix counties, South Dakota (Naugle et al. 1996, Tallman et al. 2002); Pope County, Minnesota (Green and Janssen 1975); and possibly in southeastern Saskatchewan (Nero and Lein 1971, Smith et al. 1996). …

Bat Survey Along The Missouri River In Central South Dakota, Alyssa M. Kiesow, Joshua A. Kiesow

The Prairie Naturalist

ats are efficient predators of night-flying insects (Whitaker 1993), particularly in urban, agricultural, and forested areas in South Dakota (Kiesow 2004). In South Dakota, 6 bat species are considered rare and presently monitored by the South Dakota Natural Heritage Program (SDNHP; South Dakota Natural Heritage Program 2002). Because bats serve a vital ecosystem function there is an increased need to conserve bats and their habitats. Hence, the objectives of this project were to determine bat species richness along the Missouri River in central South Dakota. We conducted surveys of bats using mist-nets and acoustic detection from early May to early …

Use Of Late Season Standing Corn By Female White-Tailed Deer In The Northern Great Plains During A Mild Winter, Troy W. Grovenburg, Christopher N. Jacques, Christopher C. Swanson, Robert W. Klaver, Jonathan Jenks

The Prairie Naturalist

Winter habitat and resource use of white-tailed deer (Odocoileus virginianus) have been studied extensively throughout their northern range. However, limited information exists on deer use of late season standing corn. We evaluated standing corn use by female white-tailed deer on winter range in north-central South Dakota during winter 2005-2006. Results indicate that cover type selection occurred at the population (P < 0.001) and home range (P < 0.001) levels. PopUlation level analysis indicated selection for standing corn (vi> = 4.31) and Conservation Reserve Program (CRP) grasslands (vi> = 2.81). Similarly, at the home range level, deer selected for standing corn (vi> = 1.35) and CRP grasslands (vi> = 1.44). Deer disproportionately increased use of standing corn and CRP …

Potential Importance Of Competition, Predation, And Prey On Yellow Perch Growth From Two Dissimilar Population Types, Casey W. Schoenebeck, Michael L. Brown

The Prairie Naturalist

Our objective was to describe the influence of population dynamics, inter- and intra-specific competition, predation, prey abundance, and prey size structure on yellow perch (Perca flavescens) growth for two perch population types (high-quality and low-quality) commonly found in South Dakota glacial lakes. We selected Lake Cochrane as a low quality yellow perch population and Lake Madison as a high quality perch population. Sunfish (Lepomis spp.) relative abundance was greater (P < 0.05) in Lake Cochrane than Lake Madison, suggesting interspecific competition may have a large influence on yellow perch growth. Indices of available sizes and densities of zooplankton were lower (P < 0.05) in Lake Cochrane than Lake Madison, suggesting that increased competition for large zooplankton may have reduced zooplankton size structure and density. Zooplankton may be a limiting resource in South Dakota glacial lakes when both yellow perch and sunfish are feeding primarily on zooplankton which may explain differences in perch growth rates between population types .

Climatological Factors Influencing Yellow Perch Production In Semi-Permanent Wetlands, Christopher M. Longhenry, Michael L. Brown, Todd R. St. Sauver

The Prairie Naturalist

Climatological factors such as temperature, wind, and precipitation have been reported to affect fish reproduction and recruitment in large lakes; however, little is known about these relationships in shallow, semi-permanent wetlands. We utilized age-O yellow perch (Perca flavescens) aquacultural harvest data to model climate effects on variability of juvenile yellow perch year class strength in semi-permanent wetlands. Overall, March through May precipitation, April air temperature, and a wetland parameter (i.e., intrinsic characteristics) provided the best-supported model. These results potentially indicate that spring weather patterns have an influence on yellow perch year class strength in semi-permanent wetlands.

Comparison Of Two Zooplankton Sampling Gears In Shallow, Homogeneous Lakes, Maude E. Livings, Casey W. Schoenebeck, Michael L. Brown

The Prairie Naturalist

We compared two zooplankton collection gears, Wisconsin nets and column samplers, to evaluate the effectiveness of each gear in quantifying inshore and offshore zooplankton density and size structure in shallow, homogeneous lakes. Zooplankton densities (within gear) did not differ (P > 0.05) between inshore and offshore sites in either study lake, with the exception of Wisconsin-netted Cyclops sp. in Lake Goldsmith. Wisconsin net samples produced a higher mean zooplankton density than column samplers for Bosmina sp., Cyclops sp., and Daphnia sp. in East Oakwood Lake and for Cyclops sp. (inshore), Daphnia sp., and Diaptomus sp. in Lake Goldsmith. Zooplankton densities had …

The R Journal (June 2010) 2(1): Complete Issue, The R Foundation

The R Journal

Contributed Research Articles

IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments, Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy, Tobias Verbeke, Hinrich Göhlmann, An De Bondt, Willem Talloen, and Luc Bijnens

MCMC for Generalized Linear Mixed Models with glmmBUGS, Patrick Brown and Lutong Zhou

Mapping and Measuring Country Shapes, Nils B. Weidmann and Kristian Skrede Gleditsch

tmvtnorm: A Package for the Truncated Multivariate Normal Distribution, Stefan Wilhelm and B. G. Manjunath

neuralnet: Training of Neural Networks, Frauke Günther and Stefan Fritsch

glmperm: A Permutation of Regressor Residuals Test for Inference in Generalized Linear Models, Wiebke Werft and …

Three New Species Of Paragnorimus Becker From Central America (Coleoptera: Scarabaeidae: Cetoniinae: Trichiini) With A Redefinition Of The Genus, Andrew B. T. Smith

Insecta Mundi

Three new species of Paragnorimus Becker are described: Paragnorimus atratus n. sp. from Guatemala, P. hondurensis n. sp. from Honduras and Nicaragua, and P. howdeni n. sp. from Guatemala. Based on the overlapping characters of these new species, the genus Peltotrichius Howden is placed in synonymy with Paragnorimus. Paragnorimus is given a broader definition to encompass the new species and the two species formerly placed in the genus Peltotrichius.

Isogene: An R Package For Analyzing Dose-Response Studies In Microarray Experiments, Setia Pramana, Dan Lin, Philippe Haldermans, Ziv Shkedy, Tobias Verbeke, Hinrich Göhlmann, An De Bondt, Williem Talloen, Luc Bijnens

The R Journal

IsoGene is an R package for the analysis of dose-response microarray experiments to identify gene or subsets of genes with a mono tone relationship between the gene expression and the doses. Several testing procedures (i.e., the likelihood ratio test, Williams, Marcus, the M, and Modified M), that take into account the order restriction of the means with respect to the increasing doses are implemented in the package. The inference is based on resampling methods, both permutations and the Significance Analysis of Microarrays (SAM).

Neuralnet: Training Of Neural Networks, Franke Günther, Stefan Fritsch

The R Journal

Artificial neural networks are applied in many situations. neuralnet is built to train multi-layer perceptrons in the context of regression analyses, i.e. to approximate functional relationships between covariates and response variables. Thus, neural networks are used as extensions of generalized linear models. neuralnet is a very flexible package. The back propagation algorithm and three versions of resilient back-propagation are implemented and it provides a custom-choice of activation and error function. An arbitrary number of covariates and response variables as well as of hidden layers can theoretically be included. The paper gives a brief introduction to multi-layer perceptrons and resilient back-propagation …

Distribution Of Abacion Texense (Loomis, 1937), The Only Milliped Species Traversing The Rio Grande, Mississippi, And Pecos Rivers (Callipodida: Abacionidae), Chris T. Mcallister, Rowland M. Shelley

Insecta Mundi

Localities are documented for the milliped Abacion texense (Loomis, 1837) (Callipodida: Abacionidae) whose distribution forms both the northern and southern ordinal limits in the Western Hemisphere. The westernmost component of Abacion Rafinesque, 1820, A. texense is the only milliped species whose range spans the Mississippi and Pecos rivers and the Rio Grande. Distribution extremes are in Hennepin County (Co.), Minnesota, in the north; Terrell and Potter cos., Texas, in the west; Alcorn Co., Mississippi, in the east; and southwestern Tamaulipas, Mexico, in the south. Occurrences are projected for southeastern South Dakota, northwestern Alabama, and the southwestern periphery of Tennessee. The …

An Annotated List Of The Centipedes (Chilopoda) In The National Collection Of Arachnids, Instituto De Biología, Universidad Nacional Autónoma De México, Fabio Germán Cupul-Magaña

Insecta Mundi

The National Collection of Arachnids, Instituto de Biología, Universidad Nacional Autónoma de México (México City) houses 476 chilopod samples, of which 197 are determined to genus and/or species. These are documented here and represent several new state records. Topotypes of eight species of centipedes described by R. V. Chamberlin also documented.

Resumen. La Colección Nacional de Arácnidos, del Instituto de Biología de la Universidad Nacional Autónoma de México (Ciudad de México), resguarda 476 muestras de quilópodos, de los que 197 están determinadas a nivel de género y/o especie. Algunas de estas muestras corresponden a nuevos registros estatales. Se documentan los …

New Species Of Orizabus Fairmaire (Coleoptera: Scarabaeidae: Dynastinae: Pentodontini) From Mexico And Guatemala, With A Revised Key And Checklist Of The Species In The Genus, Brett C. Ratcliffe, Ronald D. Cave

Insecta Mundi

Five new species of Orizabus Fairmaire from Mexico and Guatemala are described, illustrated, and compared with other Orizabus species: O. amalgamatus Ratcliffe and Cave, O. delgadoi Ratcliffe and Cave, O. epithecus Ratcliffe and Cave, O. mezclus Ratcliffe and Cave, and O. thomasi Ratcliffe and Cave. An identification key and a checklist of the species in the genus Orizabus are provided.