Digital Commons Network^™

Serum Proteome Profiling Detects Myelodysplastic Syndromes And Identifies Cxc Chemokine Ligands 4 And 7 As Markers For Advanced Disease, Manuel Aivado, Dimitrios Spentzos, Ulrich Germing, Gil Alterovitz, Xiao-Ying Meng, Franck Grall, Aristoteles A. N. Giagounidis, Giannoula Klement, Ulrich Steidl, Hasan H. Otu, Akos Czibere, Wolf C. Prall, Christof Iking-Konert, Michelle Shayne, Marco F. Ramoni, Norbert Gattermann, Rainer Haas, Constantine S. Mitsiades, Eric T. Fung, Towia A. Libermann

Department of Electrical and Computer Engineering: Faculty Publications

Myelodysplastic syndromes (MDS) are among the most frequent hematologic malignancies. Patients have a short survival and often progress to acute myeloid leukemia. The diagnosis of MDS can be difficult; there is a paucity of molecular markers, and the pathophysiology is largely unknown. Therefore, we conducted a multicenter study investigating whether serum proteome profiling may serve as a noninvasive platform to discover novel molecular markers for MDS. We generated serum proteome profiles from 218 individuals by MS and identified a profile that distinguishes MDS from non-MDS cytopenias in a learning sample set. This profile was validated by testing its ability to …

Extraction And Characterization Of Starch From Alkaline Cooked Corn Masa, Wajira Srinanda Ratnayake, Andrew B. Wassinger, David S. Jackson

Department of Food Science and Technology: Faculty Publications

Starch granules undergo structural and morphological changes during food processing unit operations as they interact with other food ingredients. This study was conducted to isolate and characterize starch granules from corn masa. A proteolytic enzyme, thermolysin, was effective in separating and isolating starch granules from endosperm proteins present in masa. The efficiency of starch extraction using thermolysin was 74% (w/w), and subsequent analyses showed that the isolated granules were free of contaminants. Starch samples were characterized using light microscopy, SEM, DSC, and XRD. Starch granules isolated from masa had undergone internal structural changes and some granules (≈40%) lost birefringence during …

Grassland Establishment For Wildlife Conservation, D. Todd Jones-Farrand, Loren W. Burger Jr., Douglas H. Johnson, Mark R. Ryan

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Establishing grasslands has important implications for wildlife, especially in areas historically rich in grasslands that have since been converted to row crop agriculture. Most grasslands established under farm conservation programs have replaced annual crops with perennial cover that provides year-round resources for wildlife. This change in land use has had a huge influence on grassland bird populations; little is known about its impacts on other terrestrial wildlife species. Wildlife response to grassland establishment is a multi-scale phenomenon dependent upon vegetation structure and composition within the planting, practice-level factors such as size and shape of the field, and its landscape context, …

Survey Of Selected Pathogens And Blood Parameters Of Northern Yellowstone Elk: Wolf Sanitation Effect Implications, Shannon M. Barber-Meyer, P. J. White, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

The restoration or conservation of predators could reduce seroprevalences of certain diseases in prey if predation selectively removes animals exhibiting clinical signs. We assessed disease seroprevalences and blood parameters of 115 adult female elk (Cervus elaphus) wintering on the northern range of Yellowstone National Park [YNP] during 2000– 2005 and compared them to data collected prior to wolf (Canis lupus) restoration (WR) in 1995 and to two other herds in Montana to assess this prediction. Blood parameters were generally within two standard deviations of the means observed in other Montana herds (Gravelly-Snowcrest [GS] and Garnet Mountain …

Grassland Composition Affects Season Shifts In Seed Preference By Pogonomyrmex Barbatus (Hymenoptera: Myrmicinae) In The Edwards Plateau, Texas, Nancy Nicolai, Jerry L. Cook, Fred E. Smeins

Department of Agronomy and Horticulture: Faculty Publications

The effects of season and community composition as generated by livestock herbivory of differing intensity on seed species preference by Pogonomyrmex barbatus (F. Smith) were studied in a semiarid savanna on the Edward’s Plateau, TX. Seasonal differences in nutrient requirements of the colony could lead to differential preferences for seeds harvested in spring and fall. Field cafeteria studies were conducted to test the hypothesis that late successional species, with their high nutrient content, would be chosen regardless of grazing intensity or season. Commercial seeds of known nutrient content were used to test the hypothesis that high protein levels would be …

The Ripple Effect: Biofuels, Food Security, And The Environment, Rosamond L. Naylor, Adam Liska, Marshall B. Burke, Walter P. Falcon, Joanne C. Gaskell, Scott D. Rozelle, Kenneth G. Cassman

Department of Agronomy and Horticulture: Faculty Publications

The integration of the agricultural and energy sectors caused by rapid growth in the biofuels market signals a new era in food policy and sustainable development. For the first time in decades, agricultural commodity markets could experience a sustained increase in prices, breaking the long-term price decline that has benefited food consumers worldwide. Whether this transition occurs—and how it will affect global hunger and poverty—remain to be seen. Will food markets begin to track the volatile energy market in terms of price and availability? Will changes in agricultural commodity markets benefit net food producers and raise farm incomes in poor …

Ethylene Involvement In The Regulation Of The H+-Atpase Csha1 Gene And Of The New Isolated Ferric Reductase Csfro1 And Iron Transporter Csirt1 Genes In Cucumber Plants, Brian M. Waters, Carlos Lucena, Francisco J. Romera, Gena G. Jester, April N. Wynn, Carmen L. Rojas, Esteban Alcántara, Rafael Pérez-Vicente

Department of Agronomy and Horticulture: Faculty Publications

In previous works using ethylene inhibitors and precursors, it has been shown that ethylene participates in the regulation of several Fe-deficiency stress responses by Strategy I plants, such as enhanced ferric reductase activity, rhizosphere acidification, and subapical root hair development. Furthermore, recent evidence suggests that ethylene could regulate the expression of both the ferric reductase and the iron transporter genes of Strategy I plants by affecting the FER (or FER-like) transcription factor. Recently, two H⁺-ATPase genes have been isolated from cucumber roots, CsHA1 and CsHA2. CsHA1 is up-regulated under Fe deficiency while CsHA2 is constitutively expressed. In …

Flagellar Motility And Structure In The Hyperthermoacidophilic Archaeon Sulfolobus Solfataricus, Zalán Szabó, Musa Sani, Maarten Groeneveld, Benham Zolghadr, James Schelert, Sonja-Verena Albers, Paul H. Blum, Egbert J. Boekema, Arnold J.M. Driessen

School of Biological Sciences: Faculty Publications

Flagellation in archaea is widespread and is involved in swimming motility. Here, we demonstrate that the

structural flagellin gene from the crenarchaeaon Sulfolobus solfataricus is highly expressed in stationary-phasegrown

cells and under unfavorable nutritional conditions. A mutant in a flagellar auxiliary gene, flaJ, was

found to be nonmotile. Electron microscopic imaging of the flagellum indicates that the filaments are composed

of right-handed helices.

Lupine Allergy: Not Simply Cross-Reactivity With Peanut Or Soy, Kim A. B. M. Peeters, Julie A. Nordlee, André H. Penninks, Lingyun Chen, Richard E. Goodman, Carla A. F. M. Bruijnzeel-Koomen, Sue L. Hefle, Steve L. Taylor, André C. Knulst

Department of Food Science and Technology: Faculty Publications

Background: Reports of lupine allergy are increasing as its use in food products increases. Lupine allergy might be the consequence of cross-reactivity after sensitization to peanut or other legumes or de novo sensitization. Lupine allergens have not been completely characterized.

Objectives: We sought to identify allergens associated with lupine allergy, evaluate potential cross-reactivity with peanut, and determine eliciting doses (EDs) for lupine allergy by using double-blind, placebo-controlled food challenges.

Methods: Six patients with a history of allergic reactions to lupine flour were evaluated by using skin prick tests, CAP tests, and double-blind, placebo-controlled food challenges. Three of …

Structure And Biosynthesis Of Heat-Stable Antifungal Factor (Hsaf), A Broad-Spectrum Antimycotic With A Novel Mode Of Action, Fengan Yu, Kathia Zaleta-River, Xiangcheng Zhu, Justin Huffman, Jeffrey C. Millet, Steven D. Harris, Gary Y. Yuen, Xing-Cong Li, Liangcheng Du

Department of Chemistry: Faculty Publications

A screen for antifungal compounds from Lysobacter enzymogenes strain C3, a bacterial biological control agent of fungal diseases, has previously led to the isolation of heat-stable antifungal factor (HSAF). HSAF exhibits inhibitory activities against a wide range of fungal species and shows a novel mode of antifungal action by disrupting the biosynthesis of a distinct group of sphingolipids. We have now determined the chemical structure of HSAF, which is identical to that of dihydromaltophilin, an antifungal metabolite with a unique macrocyclic lactam system containing a tetramic acid moiety and a 5,5,6-tricyclic skeleton. We have also identified the genetic locus responsible …

Parasites, Proteomics And Performance: Effects Of Gregarine Gut Parasites On Dragonfly Flight Muscle Composition And Function, Rudolf J. Schilder, James H. Marden

School of Biological Sciences: Faculty Publications

In previous work, we found that dragonflies infected with gregarine gut parasites have reduced muscle power output, loss of lipid oxidation in their flight muscles, and a suite of symptoms similar to mammalian metabolic syndrome. Here, we test the hypothesis that changes in muscle protein composition underlie the observed changes in contractile performance. We found that gregarine infection was associated with a 10-fold average reduction in abundance of a ~155·kDa fragment of muscle myosin heavy chain (MHC; ~206·kDa intact size). Insect MHC gene sequences contain evolutionarily conserved amino acid motifs predicted for calpain cleavage, and we found that calpain digestion …

Grânulos De Amido E Fitólitos Em Cálculos Dentários Humanos: Contribuição Ao Estudo Do Modo De Vida E Subsistência De Grupos Sambaquianos Do Litoral Sul Do Brasil, Verônica Wesolowski, Sheila Maria Ferraz Mendonça De Souza, Karl Reinhard, Gregório Ceccantini

Karl Reinhard Publications

Este artigo tem por objetivo apresentar os resultados da recuperação e análise de micro-vestígios vegetais retidos em cálculos dentários de grupos de pescadores-coletores do litoral sul do Brasil. Apresenta também os resultados das relações mantidas entre grânulos de amido e cárie, e entre fitólitos e desgaste dentário.

Através da dissolução química de cálculos dentários foram recuperados microvestígios vegetais em todos os indivíduos estudados. Foi evidenciado o consumo de alimentos amiláceos em todas as séries esqueléticas estudadas, demonstrando independência entre dieta com aporte de produtos vegetais e utilização de cerâmica. Foram encontrados resultados sugestivos de padrões de escolha de alimentos diferenciados …

Lagomorph And Rodent Responses To Two Protein Hydrolysates, Julia A. Figueroa, Bruce A. Kimball, Kelly R. Perry

United States Department of Agriculture Wildlife Services: Staff Publications

Various species of rodents and lagomorphs were used in bioassays to determine the effectiveness of protein hydrolysates (specifically hydrolyzed casein and gelatin) as herbivore repellents. Mixed sex groups of captive rabbits, pocket gophers, voles, and mountain beavers were offered hydrolyzed casein or gelatin test diets in single-choice tests following a training period with a hydrolysate-free diet. The effectiveness of either hydrolyzed casein or gelatin was dependent on the species. Hydrolyzed casein was identified as an effective repellent for mountain beavers and pocket gophers as these species showed a strong avoidance of hydrolyzed casein diets. Rabbits demonstrated slightly higher avoidance of …

Soil-Applied Nitrogen And Composted Manure Effects On Soybean Hay Quality And Grain Yield, James J. Heitholt, David Kee, John J. Sloan, C. T. Mackown, Sue Metz, Ava L. Kee, Russell L. Sutton

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Grain yield in many soybean experiments fails to respond to fertilizer nitrogen (N). A few positive responses have been reported when soybean were grown in the southern U.S., when N was applied near flowering and when biosolids were added. In a previous study, low N concentrations of soybean forage in north Texas on a high pH calcareous soil were reported and thus, we suspected a N nutrition problem. Consequently, we initiated this study to determine whether selected preplant N sources broadcast and incorporated into a Houston Black clay (fine, smectitic, thermic Udic Haplusterts) might increase forage N concentration, forage yield, …

Development And Pilot Testing Of An Omega-3 Fatty Acid Food Frequency Questionnaire, Paula K. Ritter-Gooder, Nancy M. Lewis, Kimberly Barber-Heidal, Megan Waltz-Hill

Department of Nutrition and Health Sciences: Faculty Publications

Omega-3 fatty acids are essential to health and provide cardio-protective benefits. To estimate omega-3 fatty acid dietary intake, we developed a semi-quantitative food frequency questionnaire (FFQ) and pilot tested its reliability and validity in a convenience sample of cardiac patients in the Midwest. The FFQ was developed using the USDA Nutrient Database for Standard Reference and the ESHA Food Processor, ESHA Research, Salem, Oregon. Three 24-h recalls and two administrations of the FFQ two weeks apart were obtained by a dietitian by phone and home visit from 28 volunteers. Pearson correlation was used to assess the association between food recalls …

Feeding Drosophila A Biotin-Deficient Diet For Multiple Generations Increases Stress Resistance And Lifespan And Alters Gene Expression And Histone Biotinylation Patterns, Erin M. Smith, Jia Tse Hoi, Joel C. Eissenberg, James D. Shoemaker, Wendi S. Neckameyer, Anne M. Ilvarsonn, Lawrence G. Harshman, Vicki L. Schlegel, Janos Zempleni

Department of Nutrition and Health Sciences: Faculty Publications

Caloric restriction increases stress resistance and lifespan in Drosophila melanogaster and other species. The roles of individual nutrients in stress resistance and longevity are largely unknown. The vitamin biotin is a potential candidate for mediating these effects, given its known roles in stress signaling and gene regulation by epigenetic mechanisms, i.e., biotinylation of histones. Here, we tested the hypothesis that prolonged culture of Drosophila on biotin-deficient medium increases stress resistance and lifespan. Flies were fed a biotin-deficient diet for multiple generations; controls were fed a biotin-normal diet. In some experiments, a third group of flies was fed a biotin-deficient diet …

Powerpoint On Water, Food, Energy, And Youth, Families And Communities, John Owens

John Owens: Speeches and Appearances

Thank you for this opportunity to speak with you today. It's always my pleasure to talk about the exciting work occurring in the Institute of Agriculture and Natural Resources.

Master Coqservationists Presentations - 2007, John Owens

John Owens: Speeches and Appearances

Before announcing our honorees this evening, I would like to call your attention to results of an independent study done for the Institute of Agriculture and Natural Resources at the University of Nebraska-Lincoln during the past year. The "At Work for Nebraska" study was done by Battelle, of Columbus, Ohio, which is a nonprofit research and development organization specializing in global science and technology. The independent study found that our Institute provides a 15-to-one return on every tax dollar invested with us. That's 15-to-one conservatively. We all wish we could get that return on all our own investments. I encourage …

Haskell Agricultural Laboratory 50th Anniversary Celebration, John Owens

John Owens: Speeches and Appearances

Today we celebrate 50 years of work done here at the Haskell Agricultural Laboratory for Nebraska. Work that addresses issues of great importance here. Work that matters. As your land-grant university, it is a point of pride for us to celebrate work done for our state. We are at work for Nebraska. That's our heritage. It's why we're here.

Gudmundsen Sandhills Laboratory Open House, John Owens

John Owens: Speeches and Appearances

Please let me also extend a welcome to everyone attending today's Gudmundsen Sandhills Laboratory open house. It is wonderful to see you here, and it is great to be back. I know this is going to be a good, informative day, and I thank each and every member of our Institute of Agriculture and Natural Resources' community who has worked to make this open house a success. I have a special thank you for today's co-sponsors and exhibitors who are providing such useful information. And a sincere thank you to each of you attending today's open house. You’re the reason …

Panhandle Research And Extension Center Feedlot Dedication Ceremony, John Owens

John Owens: Speeches and Appearances

It is my very great privilege and pleasure to have this opportunity to welcome you to today's dedication. We look forward with great anticipation to the exciting, important research to enhance cattle feeding profitability this feedlot will provide. Approximately 34 percent of Panhandle agriculture's economic impact - about $350 million yearly - comes from cattle finishing.

Abn Noon Speech (Short Version), John Owens

John Owens: Speeches and Appearances

Folks, because we find ourselves in a time crunch, I'm going to forego the terrific speech I planned to give today and quickly make five key points. Please know I will be happy to provide additional information on any of them at any time.

A Feminist Human Rights Law Approach For Engendering The Millennium Development Goals, Christina T. Holder

Cardozo Journal of Equal Rights & Social Justice

The note critiques the Millennium Development Goals (MDGs) for adopting a technocratic, economic-focused approach to poverty reduction, which neglects the equitable distribution of development benefits and the structural causes of poverty. It advocates for a feminist human rights law approach that integrates Third World Feminism and human rights frameworks to create a more inclusive and rights-based strategy for achieving the MDGs, particularly in empowering women and addressing gender inequalities.

Nutrient Use Efficiency: Measurement And Management, Achim Dobermann

Department of Agronomy and Horticulture: Faculty Publications

Mineral fertilizers have sustained world agriculture and thus global population and wealth growth for more than 100 years (Smil, 2001; Stewart et al., 2005). Their contribution to increasing crop yields has spared millions of hectares of natural ecosystems that otherwise would have been converted to agriculture (Balmford et al., 2005). However, lacking, imbalanced, inappropriate or excessive use of nutrients in agricultural systems remains a concern. Nutrient mining is a major cause for low crop yields in parts of the developing world, particularly Africa. In other situations, nutrients such as nitrogen (N) and phosphorus (P) often move beyond the bounds of …

Serum Testing Of Genetically Modified Soybeans With Special Emphasis On Potential Allergenicity Of The Heterologous Protein Cp4 Epsps, Michael Hoff, Dae-Yeul Son, Michaela Gubesch, Kangmo Ahn, Sang-Il Lee, Stefan Vieths, Richard E. Goodman, Barbara K. Ballmer-Weber, Gary A. Bannon

Department of Food Science and Technology: Faculty Publications

Roundup Ready soy contains the CP4-enolpyruvylshikimate-3-phosphate synthase (CP4 EPSPS) protein. Serum IgE from two distinct populations of soy-allergic patients were recruited to determine their IgE-binding specificity. One population consisted of 10 adult patients from Europe, whose primary diagnosis was soy food allergy with some also having mite allergy. In addition, 6 primarily mite-allergic, 6 food-allergic (celery, carrot, milk, shrimp, walnut, and apple), and 5 non-allergic patients were tested. Another population consisted of 13 children from Korea, whose primary diagnosis was atopic dermatitis and secondarily soy and egg sensitization. In addition, 11 non-allergic patients were tested. Each patient population was extensively …

On A Moral Right To Civil Disobedience, David Lefkowitz

Philosophy Faculty Publications

In this essay I argue that citizens of a liberal-democratic state, one that I argue has a morally justified claim to political authority, enjoy a moral right to engage in acts of suitably constrained civil disobedience, or what I will call a moral right to public disobedience. Such a claim may well appear inconsistent with the duty usually thought to correlate to a legitimate state’s right to rule, namely, a moral duty to obey the law. If successful, however, the arguments that follow entail that the duty correlative to a liberal-democratic state’s justified claim to political authority is in fact …

On The Legal Consequences Of Sauces: Should Thomas Keller's Recipes Be Per Se Copyrightable?, Christopher J. Buccafusco

Cardozo Arts & Entertainment Law Journal

No abstract provided.

Construction And Testing Of A Simple And Economical Soil Greenhouse Gas Automatic Sampler, Daniel Ginting, Spemcer L. Arnold, Nicholas S. Arnold, Ronald S. Tubbs

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Quantification of soil greenhouse gas emissions requires considerable sampling to account for spatial and/or temporal variation.With manual sampling, additional personnel are often not available to sample multiple sites within a narrow time interval. The objectives were to construct an automatic gas sampler and to compare the accuracy and precision of automatic versus manual sampling. The automatic sampler was tested with carbon dioxide (CO₂) fluxes that mimicked the range of CO₂ fluxes during a typical corn-growing season in eastern Nebraska. Gas samples were drawn from the chamber at 0, 5, and 10 min manually and with the automatic …

Long-Term Application Of Biosolids On Apricot Production, Gary S. Ban˜Uelos, Sajeemas Pasakdee, Sharon E. Benes, Craig R. Ledbetter

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The use and disposal of biosolids, or wastewater treatment sludge, as a fertilizer and soil amendment is becoming increasingly widespread. We evaluated the multiyear use of biosolids in apricot (Prunus armeniaca L.) production, grown on productive agricultural soils. Class A biosolids were initially applied annually at rates of 0, 1.9, 5.8, and 11.7 Mg · ha^-1 (dry basis) to a 2-year-old apricot orchard on the USDAARS research site on the eastern side of the San Joaquin Valley, CA. These application rates provided estimated rates of 0 (control), 57, 170, and 340 kg total N · ha^-1 yr …

Compost And Manure Effects On Fertilized Corn Silage Yield And Nitrogen Uptake Under Irrigation, Gary A. Lehrsch, D. C. Kincaid

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Dairy manure increases the yields of dry bean (Phaseolus vulgaris L.) and spring wheat (Triticum aestivum L.) from eroded, furrow-irrigated soils and may increase corn (Zea mays L.) silage yield from steeper eroded areas under sprinkler irrigation. In a 2-year field study in southern Idaho on Portneuf silt loam (coarse silty, mixed, superactive, mesic Durinodic Xeric Haplocalcid), the effects of a one-time, fall application of 29 or 72 Mg ha^-1 of dry manure or 22 or 47 Mg ha^-1 of dry compost on subsequent silage yield and nitrogen (N) uptake from previously eroded, sprinkler-irrigated hill …