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The Role Of The Dna Helicase Rrm3 Under Replication Stress, Julius Muellner

USF Tampa Graduate Theses and Dissertations

DNA replication needs to be strictly monitored to ensure proper duplication of the genome. During DNA synthesis, the DNA replication machinery encounters multiple obstacles such as incorrect dNTP incorporation, RNA-DNA hybrids, modification of DNA nucleobases, collision with the transcription-replication machinery. These endogenous and exogenous sources of DNA damage may result in single-strand breaks (SSBs) and double-strand DNA breaks (DSBs), thereby impeding fork progression. To prevent stalling of DNA synthesis a multitude of DNA repair pathways are specifically designed to deal with these kinds of blockages. One of the proteins involved in ensuring DNA replication fork progression is the DNA helicase …

Scale-Up Of Perovskite Oxides For Conversion Of Co2 To Co Through Reverse Water-Gas Shift Chemical Looping, Hanzhong Shi

USF Tampa Graduate Theses and Dissertations

CO2 conversion to CO has the benefit of further conversion to hydrocarbon-based fuels and chemicals. Due to CO2 being an important greenhouse gas, its conversion to CO and an increase of the carbon cycling will help reduce the greenhouse effect. Reverse water-gas shift chemical looping (RWSG-CL) is a two-step process that can be employed for the conversion of CO2 to CO. The first step involves partial reduction of oxygen by hydrogen to form oxygen vacant oxide, and the second step is the conversion of CO2 to CO over these partially reduced materials to regain their original structures. The RWSG-CL process …

Role Of Hla-Drb1 Fucosylation In Anti-Melanoma Immunity, Daniel K. Lester

USF Tampa Graduate Theses and Dissertations

Melanoma is the one of the most lethal skin malignancies due to its ability to rapidly metastasize and evade the immune system. One factor that influences melanoma’s ability to metastasize and evade the immune system is the tumor microenvironment. The tumor microenvironment is a complex ecosystem that consists of melanoma cells interacting with different proteins and cell types such as cytokines, extra cellular matrix proteins, and various immune cells. While different immune cells can have various implications in the tumor microenvironment, some tumor infiltrating lymphocytes (TIL) have the potential to suppress these tumors. Recent therapeutic strategies aim to enhance TILs …

Bioinformatic Analysis Predicts Microglial Dysfunction In Murine Aging, Amadu Idrisa Jalloh

USF Tampa Graduate Theses and Dissertations

Age-related disease is a growing concern as the global geriatric population increases. Neurodegenerative diseases scale unfavorably in prevalence with aging and inflict disastrous consequences to human health and well-being. These disorders are challenging to investigate because they arise from complex molecular origins. The neuroimmune system is a common factor among these diseases and microglia play an important role in maintaining homeostasis in the central nervous system. Aging progressively impairs microglia by decreasing their ability to adapt and respond to noxious environmental stimuli or injury. Microglial dysfunction aggravates neurodegenerative pathology when microglia are unable to regulate neuroinflammation effectively. We investigated aging …

Diet And Salivary Microbiome On Cardiovascular Risk And Glycemic Control In Participants With And Without Type 1 Diabetes: The Cacti Study, Tiantian Pang

USF Tampa Graduate Theses and Dissertations

Introduction: The prevalence of type 1 diabetes mellitus (T1DM) has been increasing drastically in the United States. People with T1DM are at a higher risk of developing diabetes-related complications, including cardiovascular disease (CVD). Diet is one of the most modifiable factors and healthy eating could reduce CVD risk among individuals with T1DM. The current 2015-2020 Dietary Guidelines for Americans focus on overall healthy eating patterns rather than individual foods and nutrients. A healthy dietary pattern or high-quality diet can be measured by diet quality indexes, and generally contains minimal ultra-processed foods (UPF). Although substantial evidence has linked poor diet quality …

Histone Deacetylase 8 Is A Novel Therapeutic Target For Mantle Cell Lymphoma And Preserves Natural Killer Cell Cytotoxic Function, January M. Watters

USF Tampa Graduate Theses and Dissertations

This study demonstrates for the first time that HDAC8 function is critical for MCL survival, and abrogating its activity in human primary NK cells does not interfere with NK IgG antibody directed ADCC therapies ex vivo. Human NK cells, isolated from healthy donors, are highly resistant to HDAC8 inhibitor treatment with PCI-34051. Even at the highest concentration, 20uM, no toxicity was observed. Conversely, MCL cell lines representative of the aggressive MCL subtype, classical MCL, were especially sensitive to PCI-34051, an HDAC8 selective inhibitor, treatment. Blocking HDAC8 activity and/or abrogating expression through shRNA silencing induced significant DNA damage, hyperacetylation of SMC3, …

Early Agricultural Lives: Bioarchaeological Inferences From Neolithic And Early Copper Age Tombs In The Central Po Valley, Italy, Christopher J. Eck Jr.

USF Tampa Graduate Theses and Dissertations

The current project seeks to illuminate the diets of the earliest farming societies in central Northern Italy. Neolithic peoples who first began settling in the Central Po Valley sometime at the end of the seventh and beginning of the sixth millennium BCE forever changed the landscape from one of expanding sub-continental forests to one of intensive agricultural production and anthropogenic influence. A total of 109 individual burials from 24 separate infrastructure project excavations of 17 sites surrounding the modern city of Mantua, Italy were analyzed utilizing a biochemical approach and a bioarchaeological explanatory theoretical framework based within embodiment and life …

Synergistic Effect Of Temperature And Acid Catalyst To Enhance L-Ald, Prabhsimran Singh

USF Tampa Graduate Theses and Dissertations

Liquid Atomic layer deposition (LALD) is an emergent technology used for depositing thin films. Extensive research has been done on this method, designing different techniques and modifications for the deposition of films. Wastage of alkoxide precursors, extra purging cycle, and extensive time for the reaction when added stoichiometrically are some of the drawbacks which shift the focus from metal alkoxide as precursors. In this thesis, modifications for the L-ALD method for the complete reaction of alkoxide precursors when added stoichiometrically were achieved. Temperature and catalyst’s synergistic effects were utilized for the modification. This modified method was applied for the doping …

Dreaming To Get Out The “Sunken Place”: Fantasy, Film, And The Inner-White- I(Eye), Jordan Battle

USF Tampa Graduate Theses and Dissertations

Since its inception during the transatlantic slave trade, blackness within the collective unconscious of Western society has been sutured to negative stereotypes, images, and feelings. In modern discourse on race and racism, the unconscious manifestations of anti-black racism adopted from cultural impositions, the impact of enslavement and colonization on the psyche of the subjugated, and the importance of the mind in revolutionary efforts are all too often undertheorized. Through an Afropessimist framework, this thesis uncovers the origination of the black imago in Western society, how and why it is habitually recreated, and how black theorists, artists, political activists, and others …

Apkcs Role In Neuroblastoma Cell Signaling Cascades And Implications Of Apkcs Inhibitors As Potential Therapeutics, Sloan Breedy

USF Tampa Graduate Theses and Dissertations

Neuroblastoma (NB) is a cancer that develops in the neuroblasts. It is the most common cancer in children under the age of 1 year, accounting for approximately 6% of all cancers. The prognosis of NB is linked to both age and degree of cell differentiation. This results in a range of survival rates for patients, with outcomes ranging from recurrence and mortality to high survival rates and tumor regression. Our previous work indicated that PKC-ι promotes cell proliferation in NB cells through the PKC-ι/Cdk7/Cdk2 cascade. We report on two atypical protein kinase inhibitors as potential therapeutic candidates against BE(2)-C and …

Eeg Classifier Validation Methods For Neuroprosthetic Hand Development, Keigo Yamauchi

USF Tampa Graduate Theses and Dissertations

To date, many challenges have been reported in the development of neuroprosthetic hands using EEG and neural signals. In this study, we report the results of a literature review on Brain Computer Interface (BCI) technology, an investigation of estimation methods using applications in MATLAB, and the results of Electroencephalography (EEG) classification to assist in the development of neural prosthetic hands using biological signals such as EEG. Confusion Matrix was created using Motor Imagery (MI) data as the predictive value, and the average accuracy of more than 90% was obtained for the K-Nearest Neighbor (KNN) and decision tree method. The results …

Young Adult Cancer Patients And Survivors’ Adherence To Healthy Eating And Physical Activity Guidelines, Sandra Soca Lozano

USF Tampa Graduate Theses and Dissertations

Many Adolescents and Young Adult (AYA) cancer patients/survivors do not engage in healthy eating and physical activity recommendations. The present study assessed the role of race/ethnicity, health literacy, and home environmental influences and its association with adherence to healthy eating and physical activity. AYA patients/survivors from Moffitt Cancer Center (n = 273) completed an anonymous online survey. Self-reported measures about eating habits, physical activity, health literacy, and social support were used. Black/African Americans reported worse eating habits than White and Hispanic participants. Obese participants showed a similar trend compared to all other Body Mass Index groups. Adherence to physical activity …

Time Series Analysis Of Pseudo-Nitzschia Species Composition, Domoic Acid, And Environmental Conditions In The Gulf Of Maine From 2013-2020, Christina Chadwick

USF Tampa Graduate Theses and Dissertations

Phytoplankton are abundant in both fresh and marine waters and can form harmful algal blooms (HABs) by producing potent toxins that have devastating effects on human, wildlife, and economic health. The HAB-forming diatom genus, Pseudo-nitzschia, occurs globally and approximately half of the 59 currently identified species can produce the neurotoxin, domoic acid (DA). DA accumulates in shellfish and finfish and can cause Amnesic Shellfish Poisoning (ASP) in humans and DA Poisoning (DAP) in several species of wildlife, resulting in severe neurological dysfunction and mortality. Along with these health threats, DA toxicity is a major economic threat for shellfish and fish …

Identifying Barriers And Facilitators To Family Communication Regarding Genetic Testing For Hereditary Cancer, Andrea K. Shields

USF Tampa Graduate Theses and Dissertations

Cascade testing, whereby at-risk family members are tested for known pathogenic or likely pathogenic (P/LP) variants in high risk cancer genes, provides the opportunity for changes in medical management (e.g., increased surveillance to detect cancer early or preventative surgery to reduce cancer risk). However, the rates of cascade testing are low which suggests that one-time communication may be insufficient to prompt action among family, and an increase in understanding of how to promote ongoing communication about genetic testing within families is needed. We surveyed individuals with P/LP variants in inherited cancer genes and conducted multiple linear regression with forward analysis …

Needs Assessment For A Web-Based Support Resource For Patients With A Pathogenic Variant In Lmna, Dylan M. Allen

USF Tampa Graduate Theses and Dissertations

Pathogenic variants (PV) in the gene LMNA cause autosomal dominant inherited “laminopathies” that can affect multiple different organs, most specifically the heart. Current resources for LMNA patients are sparse and disjointed, leaving a need for a comprehensive resource catering to the wants and needs of the patients. A needs assessment of LMNA support resources was completed through reviewing published literature and existing support resources and conducting 11 semi-structured interviews with individuals who have a PV in LMNA. The Social Support Theoretical Model and thematic analysis of interview transcripts were used to identify discrepancies between the support that affected individuals receive …

Comparing Mortality In Response To Simulated Climate Change In The Harvester Ant, Pogonomyrmex Badius, And The Fire Ant, Solenopsis Invicta, Haley Depner

USF Tampa Graduate Theses and Dissertations

With the rapid transport of plants, produce, and goods out of its South American home, the fire ant, Solenopsis invicta, has invaded continents on a global scale. In the United States alone, S. invicta is responsible for an estimated $1 billion in damages annually. In contrast to the invasive fire ant, Florida’s native harvester ant, Pogonomyrmex badius, is a keystone seed disperser, providing seed relocation benefits to Florida’s sandhill wildfire-adapted habitats. Seed relocation reduces seedling competition for nutrients with the parent plant, reduces predation of seeds by rodents, increases nutrient loads associated with ant mound soils, and protects seeds from …

Modeling Leachate Treatment Processes In Adsorbent-Amended Hybrid Constructed Wetland, Ishfaqun Nisa

USF Tampa Graduate Theses and Dissertations

Due to their efficiency in removing ammonia nitrogen, Constructed Wetlands (CW) are currently considered a very useful method for on-site leachate treatment. In recent years, the use of adsorbent media in CWs, such as zeolite and biochar, to improve pollutant removal efficiency has been explored and these studies indicate that incorporating zeolite can improve the nitrification process, while the addition of biochar can enhance the denitrification process and the removal of organic compounds. However, studies on mechanistic/process models simulating performance of adsorbent-amended CWs for treating landfill leachate are limited. This study presents simulation results for both unamended and adsorbent-amended hybrid …

Remote Medical Diagnosis Via Infrared Thermography And Augmented Reality, Frederick M. Selkey

USF Tampa Graduate Theses and Dissertations

Fast, accurate, and non-invasive diagnostic techniques are required by the medical industry to increase the success of medical treatments and enhance the quality of patient care. Medical IRT has been demonstrated reasonably effective at diagnosing and monitoring several physiological conditions. Diversities in the human body, physical and psychological condition, measurement equipment, and environment all influence the sensitive readings obtained by passive IR measurement devices. New standards for medical IRT and fever screening have been demonstrated effective, but there is limited adherence to the guidelines [36]. Absolute temperature readings require regular calibration checks and can easily be thrown off by noise. …

Evaluation Of A Story-Telling Approach To Educate Minority Populations About Inherited Cancer, Celestyn B. Angot

USF Tampa Graduate Theses and Dissertations

Utilization of hereditary cancer genetic counseling and testing services is substantially lower among minority populations compared to white populations due, in part, to lower levels of awareness and knowledge. To help improve awareness, we designed a 7-minute video that uses storytelling to translate knowledge of genetic testing and hereditary cancer to individuals who have a personal history or family history of cancer. Consented participants were asked baseline questions about hereditary cancer and genetic testing, reviewed the video, and provided feedback on its content, understandability, and visual appeal during semi-structured interviews. Data were coded and analyzed to identify themes and determine …

Ecohydrology, Cultural Perceptions, And Recovery Of Freshwater Wetlands In A Heavily Managed Urban Aquifer, Jessica Ashley Balerna

USF Tampa Graduate Theses and Dissertations

Freshwater wetlands provide essential ecosystem services that influence, and are influenced by, human perceptions and behaviors. I explore these feedbacks in the Tampa Bay region, which hosts numerous freshwater wetlands subjected to population increases, economic growth, and shifting management policies. These wetlands are embedded in urban and residential areas, where people can observe and respond to changes in wetland condition over time. I utilized long-term (1991–2018), high sample size (n=152) datasets to assess how wetland inundation responds to the interactive effects of climate variation and shifts in water conservation policies primarily related to cutbacks in groundwater extraction. As wetland ecosystem …

Teaching Science For Social Justice: Curriculum, Pedagogy, And Critical Science Agency In Independent School Classrooms, Selene Y. Willis

USF Tampa Graduate Theses and Dissertations

Research on social justice continues to be conducted in urban, diverse schools, while independent schools are traditionally overlooked and absent from research in many disciplines, including science education. This embedded case study uses a critical pedagogical lens to examine this gap in the research literature by examining and describing what it looks like to teach science for social justice within a suburban independent school in the southeastern United States.Research on social justice continues to be conducted in urban, diverse schools. In contrast, independent schools are traditionally overlooked and absent from research in many disciplines, including science education. This embedded case …

Diatom Diversity And Functional Groups In 72 Florida Lakes: Assessing Ecological Changes For Improved Protection And Management, Francesca M. Lauterman

USF Tampa Graduate Theses and Dissertations

Florida lakes are diverse ecosystems and are an important part of the state's biodiversity and ecosystem services. As human population and development increase across the state, many lakes have been documented as nutrient impaired and are unable to maintain essential ecological functions. In this study, diatom diversity and functional groups in 72 Florida lakes were assessed for their relationships with associated water-quality data. Common alpha diversity indices, including Shannon-Weiner Index, the Gini-Simpson Index, and Hill’s numbers were utilized to measure trends in diatom communities, while the relationships between diatom lifeform characteristics and environmental data were explored using multivariate methods and …

Field-Base Exploratory Study Of Microbial Activity In Eight Potable Water Storage Tanks In Barbados, Katelyn M. Long

USF Tampa Graduate Theses and Dissertations

There have been many initiatives to combat the global phenomenon of water scarcity. Potable water storage tanks have become widely known among water insecure countries and communities to provide adequate water quantity and quality for consumer use. Despite ubiquitous use in many low- and middle-income communities (LMIC), knowledge of microbial activity inside potable water storage tanks is limited. Barbados is a Small Island Developing State (SIDS), labeled as a high income country, and also water scarce. The Barbados Water Authority (BWA) has adapted potable water storage tanks for hundreds of residents as a solution to water quantity and water quality …

Deconstructing And Decolonizing Identities Of “Gender” And “Sex” When Viewed As Anti-Black: Black Narratives Outside Of The Binary, Didier Salgado

USF Tampa Graduate Theses and Dissertations

How is “Reality” experienced in the Black body? Is “Reality” an objective article which is outside of the realm of personal experience? Assigned sex is often assumed an objective biological phenomenon that exists everywhere and in all communities. Gender is often thought about as a socially constructed form of identity which is expressed in various ways. In this thesis, I critically examine the terror of “reality” on the Black body, looking at the ways that Black people who’ve experienced discomfort with gender and sex categories experience the “world” around them. Diving deeply into their own experiences and the meanings they …

Diazirines And Oxaziridines As Nitrogen Transfer Reagents In Drug Discovery, Khalilia C. Tillett

USF Tampa Graduate Theses and Dissertations

Synthetic organic chemistry has long served as a driver of innovation in the drug discovery and development process. Given the prevalence of the nitrogen atom in small molecule drugs, improved methods for C–N bond installation are in high demand. Heteroatom transfer reagents such as oxaziridines and diazirines can be used to selectively deliver nitrogen atom(s) to organic compounds. Herein, I’ll describe my work utilizing Armstrong’s oxaziridine (TBDOT) in peptide backbone modification, and diazirines (TPD) in the development of a hydroamination reaction.

Peptide backbone N-amination has emerged as an attractive peptidomimetic strategy in the design of amyloid aggregation inhibitors. In addition …

Social Media And Women Empowerment In Nigeria: A Study Of The #Breakthebias Campaign On Facebook, Deborah Osaro Omontese

USF Tampa Graduate Theses and Dissertations

This paper examines how the March 2022 #BreakTheBias campaign on Facebook was used as an empowerment platform in Nigeria, where women experience gender disparity. Research on the role of social media in women’s empowerment in Nigeria is an area that has not been fully studied. Previous studies have looked at women’s empowerment mainly through an educational or political lens, neglecting how social media have also been effective in empowering women. Other researchers have studied how women utilize social media platforms for leisure, entertainment, and media sharing. In the present study, non-probability sampling was used to identify 20 posts that convey …

Process Automation And Robotics Engineering For Industrial Processing Systems, Drake Stimpson

USF Tampa Graduate Theses and Dissertations

Automation in industrial systems applications has emerged as the fundamental solution for improving quality, production rate, and efficiency of a process. Much of the recent popularity surrounding the transition of processes from manually operated tasks to automated systems can be attributed to the concept of Industry 4.0, which outlines the fundamental guidelines for integrating cyber-physical systems into industrial processes. Due to rapid advancement of technology in robotics and automation as well as the increase in accessibility of resources to this technology, the capability to develop automated systems has become feasible for small-scale enterprise. This work presents a two-part initiative to …

Rehabilitation Technologies To Abate Infiltration In Sanitary Sewers, Steve Youssef

USF Tampa Graduate Theses and Dissertations

In urban coastal environments, sewer infrastructure is plagued by infiltration which seeps into aging and compromised pipes. Infiltration increases pumping costs, reduces treatment efficiency, and may trigger release of partially treated wastewater at water reclamation facilities. To restore pipes and abate infiltration, local utilities rely on structural and non-structural trenchless rehabilitation technologies. These methods are commonly used throughout the United States and the world due to their numerous benefits compared to traditional open-cut construction. However, limited data is available regarding their efficacy in reducing infiltration in sewer systems. In this study, we analysed infiltration in a small urban sewershed in …

Plastic Accumulation In Stormwater Pond Soils Across Socioeconomic And Watershed Development Gradients, Carley Defillips

USF Tampa Graduate Theses and Dissertations

Stormwater runoff is a major vector transporting pollution along the land-to-sea continuum, with the mobilization of nutrient pollution in stormwater runoff being well documented. Although plastic is a pollutant of growing concern, few studies have focused on the potential role stormwater ponds play in mediating plastic transport. This study uses a combination of watershed development and socioeconomic variables to characterize plastic pollution patterns in dry stormwater ponds (those not inundated outside of times of major rainfall) at a watershed scale. Each pond basin was sampled for plastics embedded in the soil and laying on the pond surface using a systematic …

Self-Assembly Of Metallo-Supramolecules Based On Terpyridine And Its Derivatives, Yu Yan

USF Tampa Graduate Theses and Dissertations

By studying coordination complexes in nature, such as chlorophyll, heme, and Enterobacter, we have learned that the structures of coordination complexes are closely related to their functions. However, it remains a challenge to achieve elaborate structures and sophisticated functions of complexes through synthetic methods. In the supramolecular chemistry field, coordination-driven self-assembly as a bottom-up approach are used to construct diverse supramolecules with well-defined structures and desired functions. The ways to achieve the goal including (1) rearranging components through coordination; （2）linking metal ions and organic frameworks to complete energy transfer; (3) converting between assembly and disassembly due to detection of stimuli. …