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Linear Mixed-Effects Models: Applications To The Behavioral Sciences And Adolescent Community Health, Lizmarie Gabriela Maldonado

USF Tampa Graduate Theses and Dissertations

Linear mixed-effects (LME) modeling is a widely used statistical method for analyzing repeated measures or longitudinal data. Such longitudinal studies typically aim to investigate and describe the trajectory of a desired outcome. Longitudinal data have the advantage over cross-sectional data by providing more accuracy for the model. LME models allow researchers to account for random variation among individuals and between individuals.

In this project, adolescent health was chosen as a topic of research due to the many changes that occur during this crucial time period as a precursor to overall well-being in adult life. Understanding the factors that influence how …

Consequences Of Kleptoplasty On The Distribution, Ecology, And Behavior Of The Sacoglossan Sea Slug, Elysia Clarki, Michael Louis Middlebrooks

USF Tampa Graduate Theses and Dissertations

The sacoglossan sea slug Elysia clarki is able to photosynthesize for three to four months using chloroplasts sequestered from its algal food sources. Furthermore, the slug is able to store multiple chloroplasts from different algal species within the same cell. This research, consisting of several related studies, explores the role that provision of organic nutrients via photosynthesis plays in the biology of the slug. The first chapter demonstrates that, under conditions of starvation, photosynthetic activity in E. clarki remains fully functional for one month after which it then declines. During the first month of starvation the slug exhibits similar feeding …

Characterization Of The Lone Extracytoplasmic Function Sigma Factor, Ós, And Its Role In The Staphylococcus Aureus Virulence And Stress Responses, Halie Kay Miller

USF Tampa Graduate Theses and Dissertations

Previously our laboratory had identified a novel component of the Staphylococcus aureus regulatory network, an extracytoplasmic function ó factor, óS, involved in stress response and disease causation. Here we present additional characterization of óS, demonstrating a role for it in protection against DNA damage, cell wall disruption and interaction with components of the innate immune system. Promoter mapping reveals the existence of four unique sigS start sites, one of which appears to be subject to auto-regulation. Transcriptional profiling revealed that sigS expression remains low in a number of S. aureus wild-types, but is upregulated in the highly mutated strain RN4220. …

Beyond The Backlash: Muslim And Middle Eastern Immigrants' Experiences In America, Ten Years Post-9/11, Gregory J. Mills

USF Tampa Graduate Theses and Dissertations

In this thesis, I explore the perceived character of Islamophobia in American society, and how Islamophobia is embedded in the everyday lived experiences and identity negotiations of a sample of Middle Eastern immigrants, ten years post-9/11. Data consist of 13 qualitative interviews with first-generation Middle Eastern immigrants, including Muslims, Christians, and those who claim no religion. Findings suggest that perceived discrimination and cultural hostility vary across both gender and religion. Women who cover with the hijab perceive far more discrimination and humiliating experiences than men or women who do not cover in the sample. Iranians also receive extremely poor treatment, …

Understanding Social Integration And Student Involvement As Factors Of Self-Reported Gains For African American Undergraduate Women, Edna Jones Miller

USF Tampa Graduate Theses and Dissertations

Diversity of student populations within higher education has considerably increased, particularly for women and minority populations, which is indicative of greater access to education toward a college degree. However, increased diversity of student populations has introduced a new set of challenges for higher education administrators in that it is becoming increasingly difficult for administrators to maintain current educational methods when considering the changing needs of matriculating students. As a result, higher education institutions are compelled to strategize beyond the "one-size-fits all" approach in the way teaching and support services are delivered in order to provide a more holistic approach to …

Chyd1 Solution Phase Synthesis Optimization And The Development Of A Novel Human Growth Hormone Antagonist And Agonist, Philip Murray

USF Tampa Graduate Theses and Dissertations

Inhibiting protein-protein interactions to achieve a therapeutically desired effect has been a goal in the field of drug discovery for decades. Recently, advances in peptidomimetics have led researches to the use of cyclized peptides to achieve this goal. Cyclization of linear peptides restricts the number of conformations of the peptide, increasing the peptide's affinity to binding to the desired target. Cyclization also stabilizes the peptide, allowing the peptide to be resistant to proteases. This study explores the optimization of solution phase synthesis of an important integrin-mediated cell adhesion cyclic peptide for the therapeutic inhibition of multiple myeloma, cHYD1. cHYD1 was …

Multiple Intelligences In The Text: Examining The Presence Of Mi Tasks In The Annotated Teacher's Editions Of Four High School United States History Textbooks, Carey Mullican

USF Tampa Graduate Theses and Dissertations

The current state of the social studies classroom comprises one of uninspired students using unexciting textbooks as their guide for learning U.S. history (Hope, 1996; NCES, 1993; Banks, 1990; Wakefield, 2006). With multiple intelligences gaining popularity in education, renewed hope exists for social studies to produce quality textbooks with differentiated instruction to reach all learners. The purpose was to design a rubric for measuring the presence of multiple intelligences structured tasks in teacher's editions of four 11th grade U.S. history textbooks. Using 1995 to 2007 as a purposeful sample of consistent authorships and similar publications, the study looked at teacher's …

Modification Of Trophic Links Between An Omnivore And Macroinfaunal Prey From Sandy Beaches Of Differing Physical Regimes, Kristina Joan Morrow

USF Tampa Graduate Theses and Dissertations

Sandy beach ecosystems have been studied worldwide; however, ecological data are sparse for the extensive barrier islands of Florida. Accordingly, I investigated the feeding patterns of the ghost crab (Ocypode quadrata), a dominant omnivore inhabiting beaches along the Floridian coast. Density data was collected for ghost crabs and swash macroinfaunal prey. In addition, I utilized stable isotopes in conjunction with the mixing models IsoSource and SIAR to characterize diets of ghost crabs across three barrier islands in spring and summer 2011. Results showed that ghost crabs at Cayo Costa feed primarily on swash macroinfauna, while those from Anclote Key shifted …

Defining Earth Smarts: A Construct Analysis For Socioecological Literacy Based On Justly Maintaining Quality Of Life, Bryan H. Nichols

USF Tampa Graduate Theses and Dissertations

This paper describes the creation and validation of a new educational construct. Socioecological literacy, or earth smarts, describes the qualities we need to justly maintain or improve our quality of life in a changing world. It was created using construct analysis techniques and systems tools, drawing on an extensive, transdisciplinary body of literature. Concepts related to environmental, ecological and scientific literacy, sustainability and citizenship were combined with educational frameworks, new research in science education, and modern cognitive psychology. After the initial formulation, the results were considered by a variety of experts and professionals from the fields of ecology, environmental science …

The Yellow Flag Of Quarantine: An Analysis Of The Historical And Prospective Impacts Of Socio-Legal Controls Over Contagion, Peter Oliver Okin

USF Tampa Graduate Theses and Dissertations

Under the ancient threat of morbidity and mortality from infectious diseases, human societies have responded for thousands of years by imposing social containment measures. Even before theorists and laymen recognized the existence of pathogenic organisms, or fully understood the principles of contagion, many societies and individuals did empirically infer that such diseases were transmissible from human to human (as well as sometimes between animals and humans). Having few effective technological measures to prevent or treat contagions, they did devise a variety of socio-behavioral procedures for separating overtly ill persons or suspected disease-carriers from nominally uninfected people. These methods included various …

Volume-Phase Transitions In Responsive Photo-Cross-Linked Polymer Network Films, Leena Patra

USF Tampa Graduate Theses and Dissertations

The overall thrust of this project is to gain an insight into a class of surface-tethered cross-linked thin films of poly(N-alkylacrylamides) that display a lower critical solution temperature (LCST).The structure of the alkyl group and the modification of the amide groups determine the LCST and resultant volume-phase transition behavior. The aim of this study involves synthesis and characterization of thin films and to correlate the volume-transition behavior to the structure of the alkyl group. For better understanding the volume-transition behavior, the polymer films are perturbed by the Hofmeister salt series to examine trends between different alkyl groups. While most of …

Maternal Immune Dysregulation In The Pathogenesis Of Neurodevelopmental Disorders: Interleukin-6 As A Central Mechanism And Therapeutic Target Of Flavonoids, Ellisa Carla Parker-Athill

USF Tampa Graduate Theses and Dissertations

Activation of the maternal immune system and resultant maternal cytokine expression due to prenatal infection has been implicated as a significant contributor to the pathology of neuropsychiatric and neurodevelopmental disorders such as schizophrenia and Autism Spectrum Disorder (ASD). Increased maternal interleukin-6 (IL-6) expression, observed clinically and in animal models of prenatal infection, and resultant activation of key signaling pathways, has been shown to be a biological indicator of pathology, and a central component of the pathological mechanism. In animal models of prenatal infection and clinically in pregnancy disorders hallmarked by immunological irregularities and increased IL-6 expression, inhibition of IL-6 has …

Field And Laboratory Comparison Of The Hydraulic Performance Of Two Ceramic Pot Water Filters, Duncan Peabody

USF Tampa Graduate Theses and Dissertations

Currently 884 million people worldwide are living without access to an improved source of drinking water (WHO/UNICEF, 2011). Piped-water on premises is the ultimate goal of World Health Organization (WHO) due to the ability to treat all of the water and distribute it safely in pressurized pipes. However, Household Water Treatment and Safe Storage (HWTS) is an option for improving the quality of drinking water where that infrastructure is not yet developed, especially where there is a risk of recontamination between point of collection and point of use (Clasen, 2006).

This study analyzed one such HWTS, the ceramic pot water …

Nature's Classroom: An Ethnographic Case Study Of Environmental Education, Dorothea Jody Owens

USF Tampa Graduate Theses and Dissertations

NATURE'S CLASSROOM: AN ETHNOGRAPHIC CASE STUDY OF ENVIRONMENTAL EDUCATION

DOROTHEA JODY OWENS

ABSTRACT

This ethnographic case study examines the dynamic relationship between culture and environmental education within the context of a specific Florida-based public education program. The School District of Hillsborough County (SDHC) offers the program through a three-day field trip to the study site, Nature's Classroom, and accompanying classroom curriculum. The site is located in Thonotosassa on the Hillsborough River, and serves approximately 13,500 to 15,000 sixth grade students annually. The key purpose of the research was to explore public education in a local setting as a vehicle for …

Four English Language Learners' Experiences And Strategy Use In Learning Environments Of Multiliteracies, Ho Ryong Park

USF Tampa Graduate Theses and Dissertations

English language learners (ELLs) develop their reading by engaging in diverse literacy activities in the learning contexts of multiliteracies. I investigated ELLs' experiences and their use of strategies when they read computer-based texts at home and in school. In addition, I identified a variety of influential factors that affected the ELLs' use of reading strategies when they read computer-based texts in both research contexts.

This research was conducted at homes and at three public elementary schools. Participants were two fourth-grade and two fifth-grade ELLs, four parents, and five classroom teachers. The study included observations, interviews, verbal reports, documents, field notes, …

Micronekton And Macrozooplankton Of The Western Antarctic Peninsula And The Eastern Ross Sea: Contrast Between Two Different Thermal Regimes, Melanie Leigh Parker

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Micronekton and macrozooplankton were sampled from the Western Antarctic Peninsula (WAP) and eastern Ross Sea regions. Samples were collected over the course of six research cruises to the Southern Ocean. Four of those cruises were conducted in the Marguerite Bay region of the WAP during the austral fall and winter of 2001 and 2002. A fifth cruise sampled faunal assemblages at nine sites, ranging from Joinville Island at the northern tip of the WAP to Charcot Island near the southern extent of the WAP, during austral fall 2010. A sixth cruise was conducted in the pack ice within the …

An Evolving Dyke-Otomy: Lesbianism And Learning, Megan Pugh

USF Tampa Graduate Theses and Dissertations

Homophobia and prejudice against the lesbian community have been argued to be consequences of lack of education within academic and non-academic spaces. This study introduces a pedagogical model of gendered lesbian identity that can act as a tool for educators to understand lesbian experiences, and thus contribute to addressing issues related to homophobia and prejudices in the classrooms and beyond. Based on thematic analysis of data generated by a qualitative online survey of 29 participants, this study argues that notions of social norms, individual agency, and importance of advocacy are critical points of emphases in the proposed educational model. Although …

Structure And Dynamics Of The P53 Transactivation Domain Binding To Mdm2 And Rpa70, Anne Terese Powell

USF Tampa Graduate Theses and Dissertations

The tumor suppressor protein, p53, is mutated or dysregulated in nearly all human cancers(1). The amino terminal domains are essential for transcriptional activation in stressed cells and play a vital role in cell cycle regulation, apoptosis and senescence. The transactivation (TAD) and proline rich domains in this region are dynamic and intrinsically disordered; lacking stable secondary or tertiary structure. This region contains multiple binding sites; arguably, the most significant of these is for p53's negative regulator, the E3 ligase, MDM2. An important, but less understood interaction involving the single stranded DNA binding protein, RPA70A, is hypothesized to be involved in …

Use Of Adventitious Roots For The Determination Of Hydroperiod In Isolated Wetlands, Michael Joseph Reyes

USF Tampa Graduate Theses and Dissertations

Abstract

Accurate measurement of the hydroperiod in isolated wetlands currently relies upon the installation and frequent monitoring of devices such as piezometers and staff gauges. Observations of biological indicators of the hydroperiod may be able to supplement data collected from these devices and could potentially replace them as a means of accurately determining this hydrologic interval. The study objective was to determine whether adventitious root formation and maturation on buttonbush (Cephalanthus occidentalis) could be used as a viable indicator of the hydroperiod in isolated wetlands. Buttonbush seedlings were flooded in a controlled environment over a three month period in the …

Effects Of G-Csf On Monocytes And Neurons: In Vitro And In Vivo Studies In A Mouse Model Of Alzheimer's Disease, Amanda Renee Pennington

USF Tampa Graduate Theses and Dissertations

G-CSF is routinely used to treat neutropenia/leukopenia or to increase hematopoietic stem cell generation in bone marrow donors. G-CSF and its receptor, G-CSFR, are produced by various cell types both in the peripheral circulation and within brain. As a consequence, exogenous administration of G-CSF results in a broad spectrum of effects involving hematopoietic, immune and central nervous systems.

G-CSF administration in a mouse model of Alzheimer's disease (AD) has revealed both cognitive benefits and disease modifying effects: a) decreased Aβ plaque burden, b) increased microgliosis, c) increased neurogenesis and d) improved performance in radial arm water maze (RAWM). In clinical …

Cell Adhesion And Migration On Ndga Cross-Linked Fibrillar Collagen Matrices For Tendon Tissue Engineering, Ana Ysabel Rioja

USF Tampa Graduate Theses and Dissertations

Tendons, essential tissues that connect muscles to bones, are susceptible to rupture/degeneration due to their continuous use for enabling movement. Often surgical intervention is required to repair the tendon; relieving the pain and fixing the limited mobility that occurs from the damage. Unfortunately, post-surgery immobilization techniques required to restore tendon properties frequently lead to scar formation and reduced tendon range of motion. Our ultimate goal is to create an optimal tendon prosthetic that can stabilize the damaged muscle-bone connection and then be remodeled by resident cells from the surrounding tissues over time to ensure long-term function. To achieve this, we …

A Statically Balanced Shape-Shifting Surface, Joseph Eugene Pishnery

USF Tampa Graduate Theses and Dissertations

ABSTRACT

This paper presents a concept for producing a Statically Balanced Shape-Shifting Surface (SB-SSS). In this context, an SB-SSS is a surface that can require near-zero magnitude force changes to accomplish a change in shape while retaining effectiveness as a physical barrier. This paper focuses on how to statically balance a specifically-designed compliant mechanism and how to incorporate this mechanism into a polygonal cell.

The mechanism consists of a compliant Peaucellier-Lipkin linkage layered with a pre-stressed link as the balancer. Previous work is presented that can show how a polygonal cell can be incorporated into a surface via a tiling …

The Biomechanics Of Tongue Projection In The Frog _Rana Pipiens_: Dynamics And Temperature Effects, Paula Sandusky

USF Tampa Graduate Theses and Dissertations

Ectotherms such as frogs must either function within environments with temperatures amenable to their physiological needs, or find means to reduce the impact of temperature on their activities. Recent studies on reptile and amphibian feeding have shown convergent use of elastic recoil to drive feeding movements, thereby decoupling temperature's effects on muscle from movement and allowing the animals to feed over broader temperature ranges. Rana pipiens specimens (n=5) were exposed to three ambient temperatures (10°, 15°, and 25° C) at which feeding behavior was imaged at 6000 Hz. The image sequences yielded detailed kinematic and dynamic information for jaw, tongue, …

Investigation Of Reservoirs Of Fecal Indicator Bacteria And Water Quality On The Presence Of Allochthonous Pathogens And The Ecology And Virulence Of Vibrio Vulnificus, Christopher Staley

USF Tampa Graduate Theses and Dissertations

The quality of recreational and shellfishing waters has historically been monitored using commensal, allochthonous bacteria shed in feces (fecal indicator bacteria, FIB). The fate of FIB in the environment should mimic that of bacterial, protozoan, and viral human pathogens, which may also be allochthonous (e.g. Salmonella, Cryptosporidium, or enteric viruses) or autochthonous (e.g. Vibrio spp.) to aquatic environments. FIB are contributed to water from human and animal sources; however, pollution source cannot be determined by conventional FIB measurements. Because fecal source determination is important for pollution remediation and assessment of human health risks, microbial source tracking (MST) methods are …

Modulating The Pharmacokinetics Of Bioflavonoids, Adam John Smith

USF Tampa Graduate Theses and Dissertations

One of the largest obstacles in drug development is to overcome solubility and bioavailability problems. Preformulation strategies such as nanoparticle formation are often employed but sometimes create new issues and are limited in their effectiveness and applications. Since the majority of drugs are marketed and sold as solid forms, drug delivery systems are not always desirable. This is where solid-state chemistry becomes important. Traditional solid-state chemistry approaches are often successful but are sometimes too restrictive and cannot be applied to certain compounds. Cocrystals have emerged as an alternative solid-state technique that can be applied to a broad range of compounds. …

Sugar Consumption And Cognitive Aging In The Swedish Adoption/Twin Study Of Aging, Shyam Seetharaman

USF Tampa Graduate Theses and Dissertations

Abstract

Consumption of foods high in sugar content has been linked with the development of metabolic abnormalities such as cardiovascular disease and type II diabetes, major sources of global health concerns. Although the detrimental consequences of high intake of sugar on abnormal metabolic processes are established, it is not known how this association affects (or accelerates) cognitive aging.

The current project was based on data from the Swedish Adoption/Twin Study of Aging (SATSA) to test the hypothesis that high refined sugar intake contributes to accelerated trajectories of cognitive decline assessed longitudinally. Trajectories of cognitive change were assessed as a function …

Statistical Estimation Of Physiologically-Based Pharmacokinetic Models: Identifiability, Variation, And Uncertainty With An Illustration Of Chronic Exposure To Dioxin And Dioxin-Like-Compounds., Zachary John Thompson

USF Tampa Graduate Theses and Dissertations

Assessment of human exposure to environmental chemicals is inherently subject to uncertainty and variability. There are data gaps concerning the inventory, source, duration, and intensity of exposure

as well as knowledge gaps regarding pharmacokinetics in general. These gaps result in uncertainties in exposure assessment.

The uncertainties compound further with variabilities due to population variations regarding stage of life, life style, and susceptibility,

etc. Use of physiologically-based pharmacokinetic (PBPK) models promises to reduce the uncertainties and enhance extrapolation between species, between routes, from high to low dose, and from acute to chronic exposure. However, fitting PBPK models is challenging because of …

Comparative Developmental Transcriptomics Of Echinoderms, Roy Vaughn

USF Tampa Graduate Theses and Dissertations

The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states of the tissues have begun to be activated. These networks have been well characterized in sea urchins, but not in other echinoderms. Embryos of the brittle star Ophiocoma wendtii share a number of developmental features with sea urchin embryos, including the ingression of mesenchyme cells that give rise to an embryonic skeleton. Notable differences are that no micromeres are formed during cleavage …

Structure And Agency: An Analysis Of The Impact Of Structure On Group Agents, Elizabeth Kaye Victor

USF Tampa Graduate Theses and Dissertations

Different kinds of collectives help to coordinate between individuals and social groups to solve distribution problems, supply goods and services, and enable individuals to live fulfilling lives. Collectives, as part of the process of socialization, contribute to the normalization of behaviors, and consequently, structure our ability to be self-reflective autonomous agents. Contemporary philosophy of action models characterize collective action as the product of individuals who have the proper motivations to perform cooperative activities (bottom-up); or they begin with the social-level phenomena and explain this in terms of individual actions and the mental states that motivate them (top-down). One general goal …

Shelf-Scale Mapping Of Fish Distribution Using Active And Passive Acoustics, Carrie Christy Wall

USF Tampa Graduate Theses and Dissertations

Fish sound production has been associated with courtship and spawning behavior. Acoustic recordings of fish sounds can be used to identify distribution and behavior. Passive acoustic monitoring (PAM) can record large amounts of acoustic data in a specific area for days to years. These data can be collected in remote locations under potentially unsafe seas throughout a 24-hour period providing datasets unattainable using observer-based methods. However, the instruments must withstand the caustic ocean environment and be retrieved to obtain the recorded data. This can prove difficult due to the risk of PAMs being lost, stolen or damaged, especially in highly …