Digital Commons Network^™

Ultra-Fast Sensors To Study The Fundamental Neurochemistry Underlying Disease, Alyssa West

Theses and Dissertations

Serotonin is a vital neurotransmitter whose exact roles are ill-defined. Dysfunctions in serotonin signaling are thought to underlie a myriad of neurological problems including depression and autism spectrum disorder (ASD). Prior to investigating serotonin’s role in disease states, one must understand more about the functionality of serotonin in healthy in vivo models. To study serotonin in vivo, fast-scan cyclic voltammetry (FSCV) and fast- scan controlled adsorption voltammetry (FSCAV) are employed to measure evoked and basal serotonin concentration, respectively. These methods, combined with mathematical modeling, provide information regarding regulatory mechanisms of serotonin neurotransmission. FSCV and FSCAV are first applied to …

Susceptibility To Metabolic Disease And Individual Variations In Unfolded Protein Response In Deer Mice (Peromyscus Maniculatus), Amanda Rose Havighorst

Theses and Dissertations

The endoplasmic reticulum is the site where integral membrane and secreted proteins are synthesized and folded, and is also the site of synthesis of steroids, lipids, and other macromolecules. While ER is found in most cell types, hepatocytes in particular contain large amounts of both rough and smooth ER to facilitate their tasks, which include lipoprotein assembly and secretion, cholesterol biosynthesis, and lipid metabolism. As such, stress in the ER – and the cells’ ability to respond to it – plays a key role in disease pathogenesis. In particular, hepatic steatosis, or fatty liver, is linked to ER stress. However, …

Cdse Quantum Dot Surface Chemistry Thermodynamics Via Isothermal Titration Calorimetry: An Emphasis On The Fundamentals, Megan Y. Gee

Theses and Dissertations

For several decades, the study and development of colloidal semiconductor nanocrystals, or quantum dots (QD), has become a rich field heralding improved integration into applications ranging from photovoltaics and photocatalysis to biomedical imaging and drug delivery. CdxSey is the most extensively studied QD system, however numerous compositional details still confound the nanocrystal field. Although CdSe QDs with native ligand coatings can show high fluorescence quantum yield and may be suitable for some applications, often times these original ligand layers are comprised of long aliphatic chains that preclude incorporation into biological matrices or severely impede charge transfer – depending on the …

Phylogenetic Reconstruction Analysis On Gene Order And Copy Number Variation, Ruofan Xia

Theses and Dissertations

Genome rearrangement is known as one of the main evolutionary mechanisms on the genomic level. Phylogenetic analysis based on rearrangement played a crucial role in biological research in the past decades, especially with the increasing avail- ability of fully sequenced genomes. In general, phylogenetic analysis aims to solve two problems: Small Parsimony Problem (SPP) and Big Parsimony Problem (BPP). Maximum parsimony is a popular approach for SPP and BPP which relies on itera- tively solving a NP-hard problem, the median problem. As a result, current median solvers and phylogenetic inference methods based on the median problem all face se- rious …

Adipose Tissue Engineering: A Therapeutic Strategy For The Treatment Of Obesity And Glucose Intolerance, Michael A. Hendley

Theses and Dissertations

Despite available treatment options, the number of people afflicted by type 2 diabetes has steadily risen for decades. Nearly 90% of the diabetic population also suffers from obesity and the link between the two diseases is undeniable. Characterized by rapid expansion of the adipose tissue and improper lipid storage, the mishandling of lipids by adipose tissue promotes the diabetic state. Excess lipids, unable to be properly stored, build up in peripheral tissues promoting insulin resistance and type 2 diabetes. Therapeutic strategies designed to address adipose tissue lipid handling could represent a promising treatment strategy for obesity associated type 2 diabetes. …

Tissue-Specific Roles Of Transforming Growth Factor Beta Ligands In Cardiac Outflow Tract Malformations And Calcific Aortic Valve Disease, Nadia Al-Sammarraie

Theses and Dissertations

Congenital heart defects and adult calcific aortic valve disease are two of the leading causes of morbidity and mortality worldwide. To date, there is no medical cure and surgical intervention is the main option of treatment. The cardiac outflow tract is the major site for these abnormalities, which are triggered by genetic and/or environmental factors that alter development and/or homeostasis. Recently, significant roles of TGFβ signaling in development of cardiovascular disorders have become more evident in humans, however, the specific requirement of individual TGFβ ligands on the pathogenesis of OFT malformations and diseases remains elusive. In the present work, three …

Frontiers In Fast Voltammetry: Novel Analytes And Applications, Jordan Holmes

Theses and Dissertations

Electrochemical sensors are beneficial towards the development and advancement of monitoring devices. As this type of technology progresses, so does our ability to create state-of-the-art sensing strategies to probe environmental and biological systems at the source. In the environment, it is essential to monitor particularly harmful contaminants like trace metals in order to better mitigate risk. Additionally, biological molecules are often times challenging to measure because matrices are complex and difficult to probe; Recent advancements in chemical ex vivo and in vivo sensing platforms have offered insight into physiological processes. The brain in particular requires a sophisticated, implantable sensor as …

Effects Of Radioactive Contamination And Human Disturbance On The Mammals Of Fukushima, Japan, Melissa Frances Groleau

Theses and Dissertations

The Fukushima Daiichi Nuclear Power Station accident is one of two disasters ranked as a Level 7 on the International Nuclear Event Scale, the highest possible rank. The Fukushima Prefecture and surrounding region, including the people and wildlife, were contaminated with large amounts of radioactive material. It is well known that ionizing radiation causes many negative effects on the health of animals. This study used motion activated cameras throughout the Fukushima Daiichi Exclusion Zone and surrounding area to investigate the effect of chronic exposure to low-dose radiation on medium- to large-sized mammal abundance and distribution. Only mild effects of ambient …

Approaches To Teaching Music Reading To Piano Students With Autism Spectrum Disorder, Rachel Elizabeth Davis

Theses and Dissertations

The purpose of the study was to collect information about teaching music reading to piano students with Autism Spectrum Disorder and to determine best teaching practices that may be implemented into existing curricula. The study involved interviewing six professionals who are nationally recognized for successfully teaching piano to students with ASD and analyzing the interviews to learn their procedures for teaching music reading to this population.

The interviews contain information concerning the backgrounds of the individuals being interviewed, the demographic backgrounds of students being taught, and the pedagogical process, instructional materials and technology used for teaching music reading in lessons. …

Revisiting The Standard Soil Test: The Potential Of Macro- And Microbiological Measures To Improve Agricultural Health And Productivity, Gabriel Jacob Kenne

Theses and Dissertations

The agricultural ecosystem has become the largest non-ice-covered terrestrial ecosystem on the planet and has significant direct and indirect impacts on the global health of both the environment and humanity. Recent shifts in modern agriculture are beginning to focus on the health of soil versus a focus traditionally on crop health and yield at any cost. By managing farmland regeneratively, systems are able to reverse many of the problems created by conventional land management such as erosion and unwanted nutrient runoff, and simultaneously create opportunities to move C from the atmosphere back into the soil. While the ways in which …

Age At Menarche, Measures Of The Midlife Gut Microbiome, And Cardiovascular Risk Factors, Yan Wang

Theses and Dissertations

Introduction Early menarche has been associated with greater risks of cardiovascular disease (CVD) and CVD-related mortality but the mechanisms remain unclear. We hypothesized that early menarche and CVD may share as a common cause, changes in the natural history of the gut microbiome. Methods We obtained data on 2,400 adult female twins from the TwinsUK registry. Participants reported their age at menarche retrospectively and underwent anthropometric and clinical laboratory measures in 1992-2014. They provided fecal samples in 2007-2012. Microbial DNA sequences represent the V4 region of the 16S rRNA gene. OTU-picking was done using open-reference strategy in QIIME and the …

Beyond The Words: Paratextual And Bibliographic Traces Of The Other Reader In British Literature, 1760-1897, Jeffrey Duane Rients

Theses and Dissertations

Over the course of the late eighteenth and early nineteenth centuries, compounding technological improvements and expanding education result in unprecedented growth of the reading audience in Britain. This expansion creates a new relationship with the author, opening the horizon of the authorial imagination beyond the discourse community from which the author and the text originate. The relational gap between the author and this new audience manifests as the Other Reader, an anxiety formation that the author reacts to and attempts to preempt. This dissertation tracks these reactions via several authorial strategies that address the alienation of the Other Reader, including …

Synthesizing Galactose Modified Polymeric Nanoparticles For Biofilm Inhibition Of Pseudomonas Aeruginosa, Tyler R. Flockton

Theses and Dissertations

Treating patients with antibiotics is becoming harder with the increase in antibiotic resistance. This is due to the widespread antibiotic use in clinical and agricultural settings. With antibiotic resistance outpacing new drugs making it to the market, developing new options to treat bacterial infections is and will be important. We created sugar modified nanoparticles to inhibit the biofilm formation of Pseudomonas aeruginosa.

P. aeruginosa is a gram-negative opportunistic pathogen that infects its host that has a compromised immune system. This makes it one of the most significant bacterial infection in hospitals. P. aeruginosa uses biofilms as an attack mechanism …

Chromatin Digestion By The Chemotherapeutic Agent Bleomycin Produces Nucleosome And Transcription Factor Footprinting Patterns Similar To Micrococcal Nuclease, Joshua Michael Stolz

Theses and Dissertations

Bleomycin (BLM), a glycopeptide antibiotic commonly used in chemotherapeutic treatments, has been shown to produce single and double stranded DNA breaks. Subsequent analysis of DNA fragmentation patterns has demonstrated preferential digestion of chromatin in the TSS of active genes and the ability to produce nucleosome-sized fragments within intact chromatin. Nucleosome positioning plays a critical role in the regulation of gene activation. Currently, micrococcal nuclease (MNase) is used as the standard for mapping the position of nucleosomes in the genome. In order to identify whether BLM can be used as an effective nucleosome-mapping agent, BLM was used to digest chromatin in …

Direct Conversion Of Mouse Fibroblasts Into Osteoblasts And Investigating Cobra1 Expression Responce, Walid Almoafy Alasar

Theses and Dissertations

Fibroblasts are the most common connective tissue cells and are responsible for the synthesis of extracellular matrix (ECM) and collagen. They are mainly of mesenchymal stem cells (MSCs) origin. Fibroblasts are fully differentiated cells although some recent findings reported that fibroblasts possess some potency that allows them to differentiate into other cells types. They are said to undergo adipogenic, chondrogenic, hepatogenic, nurogenic and osteogenic differentiation if grown in the suitable conditions. In the normal physiologic environment, fibroblasts can also differentiate to epithelial cells, a phenomenon known as the mesenchymal epithelial transition (MET). In the current research, we induced L929 mouse …

The Emergence Of The Alt-Right Under President Trump, Kayla M. Turner

Theses and Dissertations

White supremacy has been a continuing phenomenon in the United States since the emergence of the Ku Klux Klan in the mid-1800s. While there has been a general tendency to relegate hate crimes committed by white supremacists to past historical events, more recent events, such as the protests and attack in Charlottesville and the rise in hate crimes, suggest white supremacy may currently be increasing, particularly in response to President Donald Trump’s election. The current study examined the relationship between white supremacists and President Trump and how Stormfront users’ rhetoric about the president has changed over time. A content analysis …

Novel Antimicrobial Peptide With Anticancer Properties, Sheri Magdy Saleeb Bakheit

Theses and Dissertations

Cancer is one of the highest leading causes of death at the mean time. There are multiple approaches developed for cancer treatment including chemotherapy, radiation, and hormonal therapy. Due to the toxicity and inefficiency of such approaches, small molecules drugs (<0.5 kDa) have emerged to overcome the limitations of current therapeutics. The great potential of peptide drugs emerged from their targeted selectivity and rare resistance acquirement. Previous research has been carried on a 37 residue antimicrobial peptide, and showed dose dependent cytotoxicity on early stage Hepatocellular carcinoma cell line (HepG2). This 37-mer peptide was retrieved from the AUC Red Sea metagenomics data generated during AUC/KAUST Red Sea microbiome project and modified to enhance its anti-cancer activity. The current research aims at characterizing the cytotoxicity of the 37-mer peptide drug on an advanced stage of hepatocellular carcinoma cell line (SNU449). The anticancer effect of the peptide is tested on cancer cells proliferation, morphology, viability and migration. The peptide cytotoxic effect on normal human erythrocytes is tested, defining its hemolytic activity. Finally, we investigated the peptide antimicrobial property on gram-positive and gram-negative bacterial strains. Peptide treatment caused a dose dependent cytotoxicity on SNU449, affecting cellular morphology. The treatment caused differential expression in some major cancer hallmarks involved in proliferation, migration, apoptosis and autophagy. This suggests that upon treatment, cells undergo programmed cell death pathway. The molecular machinery involving apoptosis and autophagy are responsible for peptide cytotoxic effect on the cells. Peptide also showed no considerable hemolytic activity on human red blood cells upon application. Finally, the antimicrobial effect of the peptide is established on both gram positive and gram negative bacterial strains.

Investigation Of Therapeutic Immune Cell Metabolism, Josephine Anna Tueller

Theses and Dissertations

This thesis addresses multiple approaches to investigating mechanisms of immune linked disease. There are four projects outlined below which describe the work of these investigations. First, educating students about techniques to study disease and therapies is an important area of research. Flow cytometry is a common technique in immunology and its versatility and high throughput abilities can be applied to many fields. While it is very useful, flow cytometry is a complex technique that requires training to operate and understand, and there are very few reports about administering effective training. This thesis outlines the first report of a full semester …

Drug Shortage In Egypt: Causes And Mitigation Measures, Abeer Alanwar Saad

Theses and Dissertations

Drug shortage is a worldwide problem, which gained the attention of many authorities in recent years including the Egyptian government. The problem has markedly increased in Egypt during the past few years and has had a significant negative impact on patient care with subsequent costly financial implications. Despite the importance of the drug shortage problem and its consequences on the health of Egyptians and society as a whole, only a few researchers have addressed the topic in Egypt. This qualitative study aims at filling the gap and providing a better understanding of the problem in the Egyptian context. To achieve …

Modulation Of Stress Response In Rice Via Genome Editing Of Splicing Factors, Dina Abou-Raiya

Theses and Dissertations

Serine/arginine-rich (SR) proteins are a conserved family of RNA-binding proteins that act as key modulators of alternative splicing. While their functional relevance in plants remains largely unknown, a mounting evidence suggests a central role for these proteins in the response to various stresses. The work presented in this thesis sheds light on the functional significance of OsRS29 and OsRS33, two SR (arginine/serine subfamily) genes in rice as a model. In this study, genome editing using CRISPR/Cas9 system followed by RNA-seq were utilized to target two splicing factors in rice, Os-RS29 and Os-RS33 to examine the transcriptome-wide effects of these double …

Image Based Recognition Of The Monuments In Prizren, Annea Futko

Theses and Dissertations

Image classification application has recently been covering a high number of research fields. In the other hand as the performance of the mobile devices is being updated day by day, the implementation of image recognition algorithms in them, is not only being trendy but very helpful in everyday tasks. With the automatic monument recognition, visiting a city is easy and fun. This application recognizes the captured monument, gives useful information and describes that particular landmark. In this thesis there are used four historical monuments of the city of Prizren, Kosovo. The images where taken specially for the research from the …

From Weak Form Towards Sustainability, Arxhenda Lipovica

Theses and Dissertations

When talking about new architectural preferences, there is one key term to take into consideration: sustainable building. Understanding the dire conditions, the earth is facing, architects worldwide are focusing on applying new technologies to reach sustainability. Considering that Kosovo is taking the steps to international recognition, contemporary architecture will be an integral part of it. Even though, in Kosovo, countless buildings continue to appear without worrying about consequences. It is the place where everyone is an "Architect" as they continue to overbuild day by day stereotypes of buildings without a standard of living, by measuring the value of the architecture …

Investigations Of Point Defects In Kh2Po4 Crystals Using Ab Initio Quantum Methods, Tabitha E. R. Dodson

Theses and Dissertations

Potassium dihydrogen phosphate (KH₂PO₄, or commonly called KDP) crystals can be grown to large sizes and are used for many important devices (fast optical switches, frequency conversion, polarization rotation) for high powered lasers. The nonlinear optical material has a wide intrinsic transparency range. Intrinsic point defects are responsible for several short-lived absorption bands in the visible and ultraviolet regions that affect high-power pulsed laser propagation. The primary intrinsic defects have been experimentally detected in KDP using electron paramagnetic resonance (EPR) experiments. The defect models established thus far include (i) self-trapped holes, (ii) oxygen vacancies, and (iii) …

Initial Development Of A Prototype Sensor Testbed For Fetal Monitoring, Christian Beauvais

Theses and Dissertations

The objective of this research is to design and manufacture a device that exhibits some of the bio-physiological signals relevant to fetal health monitoring. Currently, limited options exist for testing the performance of monitoring devices such as the tocodynamometer (TOCO) and electrocardiograph (ECG) that measure the bio-physiological signals of a woman and her fetus. Sensor designers need ways of generating and acquiring signals that do not carry the ethical burden of human testing. The development of such a device, as considered in this work, may involve using muscle wire or an inflatable tube as prospective foundations for simulating uterine contraction. …

Cislunar Trajectory Generation With Sun-Exclusion Zone Constraints Using A Genetic Algorithm And Direct Method Hybridization, Joshua A. Ostman

Theses and Dissertations

Space missions to the Moon have received renewed interest in recent decades. Science missions continue to be sent to the Moon, and several space agencies have aspirations of establishing a human presence on the Moon. With the increased number of artificial objects in cislunar space, the problem of tracking these objects arises. Optical sensors are able to track these objects in deep space. However, optical sensors cannot track objects that are close to the Sun as viewed from the observer. This unobservable region is the Sun-exclusion zone (SEZ). This research attempts to create optimal Moon-Earth transfers which are completely in …

Synthesis Of Betulinic Acid Via Baylis-Hillman Reaction, Sai Krishna Kommineni

Theses and Dissertations

Betulin is readily isolated from the bark of birch trees using simple extraction techniques and this molecule as well as its derivatives (eg. betulinic acid) exhibit impressive levels of biological activity. While it is naturally available and shows selective toxicity towards certain cancers, betulin suffers from a general lack of solubility in aqueous conditions. In this regard, we took up a project involving the synthesis of conjugates of betulin with improved solubility characteristics and we were able to identify a series of compounds that showed cytotoxicity against breast and pancreatic cancer cells.

This thesis describes our efforts on the development …

Development Of Functionalized Imidazoles As Potential Therapeutical Agents, Drew Christopher Morgan

Theses and Dissertations

Imidazoles are heterocyclic small molecules that play a major role in medicinal chemistry and drug discovery. There are several drugs in the market which contain imidazoles as the pharmacophore. Metronidazole, an imidazole containing compound, is a prominent antibiotic and antiprotozoal medication used for the treatment of a variety of infections such as amoebiasis, trichomoniasis, bacterial vaginosis, etc. The current work involves the synthesis of small molecule libraries of imidazoles derived from metronidazole using Baylis-Hillman (BH) reaction. BH reaction is a carbon-carbon bond forming reaction and involves the coupling of aldehydes or imines with activated alkenes such as acrylates, acrolein, or …

Functionalized Heterocyclics As Potential Therapeutics, Anupama Indukuri

Theses and Dissertations

Heterocyclic compounds play an important role in pharmaceutical drug development. Several natural products and biologically active compounds contain heterocyclic motifs in them. Multicomponent coupling reactions offer an excellent platform for the synthesis of diverse libraries of heterocyclic compounds. We have been working on the synthesis of novel heterocyclic small molecules utilizing reactions such as Baylis-Hillman reaction, Passerini reaction, Click reaction, reductive amination aldol condensation, etc.

In the current project, we prepared three series of heterocyclic compounds using Passerini and Baylis-Hillman reactions as key steps. Owing to the importance of heterocyclic chemistry in drug discovery and the ease of synthesis, the …

Mindfulness And Blood Pressure Across Demographics: Analyses From The Serenity Study, Gabrielle R. Chin

Theses and Dissertations

Mindfulness, as a state, trait, and training, is linked with myriad positive mental and physical health outcomes. Understanding the individual characteristics potentially influencing links between mindful traits, mindfulness training, and physical health, is therefore important, yet remains under-addressed. Utilizing data from the ongoing Serenity Study (NCT02371317), the current project examines if (1) at baseline, higher trait mindfulness relates to lower BP consistently as a function of demographics, (2) Mindfulness-Based Stress Reduction (MBSR) training lowers BP consistently across demographic subgroups and initial levels of trait mindfulness, and (3) if change in trait mindfulness following MBSR training correlates with change in BP …

Emergent Behavior Development And Control In Multi-Agent Systems, David W. King

Theses and Dissertations

Emergence in natural systems is the development of complex behaviors that result from the aggregation of simple agent-to-agent and agent-to-environment interactions. Emergence research intersects with many disciplines such as physics, biology, and ecology and provides a theoretical framework for investigating how order appears to spontaneously arise in complex adaptive systems. In biological systems, emergent behaviors allow simple agents to collectively accomplish multiple tasks in highly dynamic environments; ensuring system survival. These systems all display similar properties: self-organized hierarchies, robustness, adaptability, and decentralized task execution. However, current algorithmic approaches merely present theoretical models without showing how these models actually create hierarchical, …