Digital Commons Network^™

An Investigation Of Novel Object Recognition Memory In A North American River Otter (Lontra Canadensis), Jessica J. Wegman

Theses

Memory is the mental processes of receiving and storing information for later retrieval, with long-term memories being those that are stored longer than 30 seconds. Little research has been done to investigate memory in any of the 13 species of otters. Object recognition memory has the potential to aid otters in identifying conspecifics, prey, and predators, which would contribute to better survival and fitness. Object recognition memory has been investigated in many non-human animals using the novel object recognition (NOR) task. This study was the first to investigate long-term object recognition memory in the North American river otter using the …

Artificial Neural Network Concepts And Examples, Harcharan Kabbay

Theses

Artificial Neural Networks have gained much media attention in the last few years. Every day, numer- ous articles on Artificial Intelligence, Machine Learning, and Deep Learning exist. Both academics and business are becoming increasingly interested in deep learning. Deep learning has innumerable uses, in- cluding autonomous driving, computer vision, robotics, security and surveillance, and natural language processing. The recent development and focus have primarily been made possible by the convergence of related research efforts and the introduction of APIs like Keras. The availability of high-speed compute resources such as GPUs and TPUs has also been instrumental in developing deep learning …

Cochlear Compartments Segmentation And Pharmacokinetics Using Micro Computed Tomography Images, Sanketh Satyanarayana Moudgalya

Theses

Local drug delivery to the inner ear via micropump implants has the potential to be much more effective than oral drug delivery for treating patients with sensorineural hearing loss and to protect hearing from ototoxic insult due to noise exposure. Delivering appropriate concentrations of drugs to the necessary cochlear compartments is of paramount importance; however, directly measuring local drug concentrations over time throughout the cochlea is not possible. Indirect measurement using otoacoustic emissions and auditory brainstem response are ineffective as they only provide an estimate of concentration and are susceptible to non-linear sensitivity effects. Imaging modalities such as MRI with …

Canine Gait Analysis: Interactive Online Tutorials For Veterinary Students, Allison Buck

Theses

The purpose of this thesis is to produce interactive tutorials that veterinary students can use to explore concepts that are often difficult to conceptualize, including (a) change in joint function, (b) muscle action and innervation, and (c) recognizing and locating normal vs. abnormal structure and function. Elements of this thesis include a complete 3D skeleton constructed using a series of canine CT (DICOM) files, illustrated overlays on video footage of a dog undergoing examination, and short interactive self-assessment tools. Students will be able to deconstruct and toggle components of the skeleton, as well as view the animated skeleton superimposed over …

Towards A Carbon-Neutral City By 2035: Innovative Transformation Of Domestic Solid Waste Collection And Recovery Services In Sharjah, Basem Abu Sneineh

Theses

This study quantifies the impact of an identified major step in the process of significant contribution to the transformation of Sharjah into a carbon-neutral city by the year 2035. This identified step applies to the concept of waste segregation at the residential sector source which means that the waste generators, i.e. Sharjah residents, are required to segregate the waste that they generate in their houses while disposing it. The march towards a carbon neutral city means driving the carbon dioxide emissions of the city to reach net-zero. This requires the UAE adopt this concept to ensure that the emitted amount …

Hexgen Roguevania, Conrad Garcia

Theses

This project is inspired by procedural generation methods, Metroid, Castlevania, Rogue, and modern roguelikes. This project is structured around the notion of how procedural game content can be experienced when it is tied directly to player progression. The focus of this project incorporates procedurally generated content so that it can be altered during gameplay. In a sense, this idea brings level content to the player, instead of the player travelling to new zones. The resulting game world starts visually coherent, changing into a world that resembles a patchwork of different biomes crafted by the player’s decisions to progress the game’s …

The Effects Of Overshadowing In Drosophila Melanogaster With Experimentally Evolved Preference, Jill Lee

Theses

As seen in decades of psychology research, preferences play a major role in driving the decision-making process in both humans and animals. Researchers have advocated for using the technique of experimental evolution as a way to address some of the foundational questions on preferences. These preferences can also affect what is later learned and how well new experiences are learned. Salience is usually mentioned as an important component of what could influence preferences. Animals such as Drosophila melanogaster, that lay eggs without any additional maternal or paternal care, it is important to be selective when deciding where to lay …

Distribution Of Carrion-Associated Beetles And Their Phoretic Mites Along An Urban-Rural Gradient In Northeast Alabama, Kennedy Norris

Theses

Global insect decline has been linked to urbanization, most notably by habitat fragmentation. These insects perform important ecological functions such as pollination, managing pests, and decomposing carrion to recycle nutrients back into the environment. Despite the importance of nutrient recycling behavior displayed by carrion-associated beetles, little research has been done on them in the southeastern US. Previous studies have found a relationship between urbanization, less favorable environmental conditions, carrion availability, and decreased insect diversity. However, no studies have been conducted in the southeastern United States on the relationship of these beetles to their environment despite having the highest rates of …

Norman Lewis & Philip Guston: From Modernist Margins To Postmodernism, Joette Deanna James

Theses

This thesis examines the ways in which the African American painter Norman Lewis (1909-1979) and Canadian American Jewish painter Philip Guston (1913-1980) deviated from the dogma of Abstract Expressionism and presaged Postmodernism. The modernist Abstract Expressionist movement placed value on the heroic nature of the painter, the denial of the social and political milieu outside of the work of art, and the formalist quality of the work above all. This paper argues that both Guston and Lewis, in their penchant for experimentation and stylistic fluidity, were prevented from attaining the level of commercial success and popularity of their much better …

Critical Corridor: Survey Of Predator Occurrence And Habitat Use In A Threatened Rainforest Protected Area: Comatsa-Sud And Marojejy National Park, Madagascar, Patrick H. Ross

Theses

Madagascar is a nation praised for its floral and faunal endemism and biodiversity. Among the island nation’s most emblematic fauna are its native mammalian carnivores; they are members of the threatened and endemic Eupleridae family. The Corridor of Marojejy – Anjanaharibe Sud – Tsaratanana (COMATSA) is a system of forest protected areas in which three large protected areas are connected in northern Madagascar: Tsaratanana Reserve, Anjanaharibe Sud Special Reserve and Marojejy National Park which is also a UNESCO World Heritage site. COMATSA is a newly protected and currently threatened corridor system that lacks detailed surveys and assessments of its native …

A Study On Plant-Derived Small Proteins And Peptides With Antiyeast Activity And Preliminary Investigations In Food Materials, Giulia Mignone

Theses

The discovery of novel antimicrobial molecules would benefit considerably different biotechnological fields, including medicine, agriculture and the food industry, on which this thesis work focuses. Specifically, here are presented fundamental studies on plant-derived antimicrobial proteins for the reduction of food spoilage caused by yeast microorganisms. Small proteins and peptides from the plant innate immune system possess several characteristics which could make them ideal candidates for a novel and natural antispoilage agent. The first Chapter reviews proteins families associated with the plant innate immune system that exhibit antiyeast activity and low molecular weight (<30 kDa), focusing on their structure and antiyeast mode of action. Chapter 2 investigates two peptides, Pn-AMP1 and Pn-AMP2 belonging to the hevein-type peptides family; peptides were synthetically generated using their native amino acid sequence. Synthetic Pn-AMP1 showed fast action activity against common food spoilage yeasts, it resulted potentially safe for consumption, and it was successfully incorporated in UHT milk and Fanta Orange, where it contained the growth of Kluyveromyces lactis and Zygosaccharomyces bailii, respectively. A different family of antimicrobial plant proteins (2S albumins) was studied in Chapters 3, 4, 5 and 6. Chapter 3 describes the selective extraction of an antiyeast protein (labelled WMS1 in this thesis work) of ~14 kDa from white mustard (Brassica hirta) seeds. The protein was purified in a relatively high yield, using a simple protocol that included only one chromatographic method step. In Chapter 4, bioinformatics tools and wet-lab techniques are used to study the structure and classify the antiyeast protein. The WMS1 antiyeast protein was identified as an isoform of the Napin protein Allergen Sin a 1 belonging to the 2S albumins family, characterised by high structural stability which donates to the protein resistance heat treatment and proteolytic degradation. Chapter 5 describes the antimicrobial spectrum of WMS1 , its antiyeast mechanism of action and its validity as preservative agent. Although WMS1 resulted potentially safe for consumption and inhibited the growth of Z. bailii in several beverage systems, its biotechnological potential is limited by its allergic properties. In Chapter 6, the protein WMS1 was cloned in a pET28a-MBP vector and expressed in an E. coli BL21 system. Interestedly, recombinant WMS1 and native WMS1 showed similar activity against the yeast Z. bailii. Thesis abstract 2 Chapter 7 includes a protocol for the rational design of ultra-short antimicrobial peptides. Since ultra-short antimicrobial sequences can be found within the sequence of any larger protein, the protocol was applied using WMS1 primary sequence, and seven ultra-short SinA-AMPs were chemically generated. Among the various SinA-AMPs, the peptide labelled SinA-pepIII had in vitro activity against several common yeast spoilage strains via membrane permeabilisation and it could be employed as a food preservative as it was pH- and heat- stable, potentially safe in terms of human consumption and it prevented the growth of Z. bailii in cranberry juice. The results obtained in this work offer new perspectives in the research for novel and clean-label food preservatives to fight the food waste phenomenon.

Quantifying The Effects Of Customer Predictability On Battery Energy Storage System Cost And Emissions, Mudit Bhadresh Purohit

Theses

Electricity providers are using variable pricing to encourage customers to shift energy consumption from “peak” times. This presents a great opportunity for the customers to reduce their bills using this variable pricing strategy coupled with a battery energy storage system (BESS). The schedule of charging and discharging the BESS depends on the forecasted customer demand data. Forecasts are bound to have a certain degree of error associated with them, and hence it becomes important to understand the effect of these forecasting errors on the cost and the emissions associated with scheduling of the BESS. In this work, a method has …

Aerodynamics And Aeroacoustics Optimization Of Vehicle’S Side Mirror Base And Exhaust Pipe, Moath Nayef Mohamed Zaareer

Theses

This thesis is concerned with studying two different vehicle parts in terms of aerodynamics and aeroacoustics. Two main factors determine the efficiency and luxury of the vehicle, the low aerodynamic forces and low noise emission. The aerodynamic drag coefficient is concerned with how easy a vehicle can travel through the air; the lower the value, the less fuel is needed to move the vehicle forward and less air resistance the vehicle faces. The aerodynamic lift coefficient is related to vehicle ground stability, and the more negative the value is, the higher the vehicle's stability. Moreover, the aeroacoustics is concerned with …

Using Metal-Organic Frameworks (Mof) To Reduce The Carbon Footprint Of Concrete, Mona Ibrahim El-Hallak

Theses

The production of concrete by the construction industry has a massive impact on the environment. The process of manufacturing its main component, cement, releases a considerable amount of anthropogenic carbon dioxide. This thesis is concerned with the production of sustainable and eco-friendly concrete that integrates metal-organic frameworks (MOF) to capture and offset the CO₂ emissions emitted during the production of cement. The main objective is to synthesize a MOF capable of capturing CO₂ in concrete through accelerated carbonation curing and to assess its impact on concrete performance. Different parameters were examined, including the MOF content, initial curing duration, …

The Use Of Actinobacteria To Improve The Efficacy Of Phytoremediation Of Heavy Metal-Polluted Soils In The United Arab Emirates, Fatima Abdulmoneim Hussain

Theses

In an effort to gain the advantages provided by actinobacterial enzyme (1- aminocyclopropane-1-carboxylic acid) (ACC) deaminase (ACCD) in the phytoremediation of heavy metals from the environment, the ability of native actinobacteria with ACC deaminase activity to promote the growth of Bermuda grass (Cynodon dactylon L.) in soils contaminated with nickel nitrate was evaluated under greenhouse conditions. This enzyme hydrolyzes (ACC), the immediate biosynthetic precursors of the hormone ethylene (ET) in plant tissues to ammonia and α keto-butyrate. The main objectives of this study were: (1) Isolating beneficial native heavy metal-tolerant actinobacteria from the United Arab Emirates (UAE) contaminated soil capable …

Physicochemical, Techno-Functional And Bioactive Properties Of Camel Whey Protein Concentrate As Affected By Spray-Drying And Ultrasonication Treatment, Alanoud Muhsen Al Thaibani

Theses

Whey protein concentrates (WPCs) are gaining importance as a functional ingredient due to their nutritional, techno-functional and bioactive properties. In this study, WPCs were prepared from skimmed camel milk, then either spray-dried (SD) at 170, 185 and 200°C, or treated by ultrasonication (US) (20 kHz) for 5, 10 and 15 min followed by freeze-drying to obtain powders. The characterization of WPC powders was carried out by Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Reverse-Phase Ultra Performance Liquid Chromatography (RP-UPLC) which showed that the US treatment degraded the proteins more than SD. The morphology, particle size, and surface charge of WPC …

Mangrove Growth Promotion By Endophytic Actinobacteria And Seaweed Extract, Ameera Khalfan Salem Alkaabi

Theses

In this study, I aimed to determine the impact of the application of a commercial seaweed extract (SWE) bio-stimulant and endophytic actinobacterial isolates on growth performance and endogenous hormonal levels of mangroves. Therefore, I isolated endophytic plant growth promoting (PGP) actinobacteria (PGPA) from mangrove roots; and evaluated their potential as biological inoculants on mangrove seedlings under greenhouse and open-field nursery conditions. Seven salt tolerant isolates had the ability to produce different levels of in vitro plant growth regulators (PGRs) and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase (ACCD), and to solubilize phosphorus. Accordingly, only one isolate, Streptomyces tubercidicus UAE1 (St), was …

Impact Of Saline Water Irrigation On Date Palm (Phoenix Dactylifera) Associated Bulk Soil Bacterial Communities In Oases Agroecosystem Of Uae, Fardous Abdi Ibrahim Jibar Alhashmi

Theses

Irrigation of date palm (Phoenix dactylifera) with saline groundwater is routinely practiced in the arid agroecosystems of United Arab Emirates (UAE), due to freshwater scarcity. Saline groundwater irrigation is known to deposit salts in the top layers of soil and increase soil salinization. However, how increasing soil salinization affects the belowground bacterial communities, is not well investigated. Soil samples were collected from 14 different date farms where irrigation water source was either non–saline water or saline groundwater. Soil bacterial communities were identified using 16S rRNA gene metabarcoding. The results showed that bacterial diversity (including Shannon diversity, richness, and …

Factors Affecting The Antibacterial Activity Of Cefiderocol On Klebsiella Pneumoniae With Diverse Characteristics, Lana Jamal Rashed Daoud

Theses

Antimicrobial resistance (AMR) is a growing serious threat that poses a burden on the healthcare system. Spread of AMR bacteria limits treatment options; thus, new antimicrobial agents are required. Cefiderocol (CFDC) is a novel siderophore cephalosporin, approved by the FDA in 2019 for use in treating infections caused by multi-drug resistant (MDR) pathogens; but it is not yet in clinical use in the UAE. CFDC is equipped with stabilizers against β-lactamases as well as a siderophore side chain that allows it to penetrate the outer membrane of bacteria through the iron uptake pathways. The aim of this study is to …

Multifunctional Bioactive Properties Of Plant-Based Protein Hydrolysates Derived From Citrullus Colocynthis (Bitter Apple) And Pennisetum Glaucum (Pearl Millet) Seeds, Munira Jassem Alblooshi

Theses

Protein hydrolysates (PH) from plant-based proteins (PBP) are gaining importance due to the availability, sustainable and economical production when compared to their an-imal origin counterpart. Therefore, this study explored under-utilized PBP hydroly-sates derived from Bitter apple (BA) and Pearl millet (PM) and determined their bio-active properties. Enzymatic hydrolysis (EH) of BA and PM proteins was carried out by enzymes such as alcalase (A), bromelain (B), and chymotrypsin (C) for 3, 6, and 9 h to produce PH possessing high bioactive properties. Highest degree of hydrolysis (DH) was reported in BAPH generated with C9 (87.8%) whereas for PMPH highest DH was …

Optimization Of Palmitic Acid Production In Chloroidium Sp. Utex 3007 As A Sustainable Source Of Palm Oil Alternative, Amnah Salem Alzahmi

Theses

The increase in palm oil consumption and production has resulted in removing up to 90% of trees in some tropical forests. The green microalgae Chloroidium sp. UTEX 3007 can be an alternative sustainable source of palm oil due to its high palmitic acid content. The objective of this study was to generate a mutant Chloroidium population that is capable of producing and accumulating elevated levels of palmitic acid and to characterize the obtained populations’ lipid contents. The palmitic acid production optimization in Chloroidium sp. UTEX 3007 was conducted via a workflow of ultraviolet (UV) mutagenesis and sorting of high-lipid producing …

A Detailed Parameter Study Into The Dermal Absorption Of Chemical Warfare Agents And The Effects Of Pharmacokinetics, Koko Lear

Theses

Chemical warfare agents (CWAs) are substances of varying toxicity profiles. These chemicals exhibit complex dynamics and pose a serious health risk when released into the environment. A mathematical model based on Fick’s second law of diffusion was developed to comprehend how these compounds were absorbed into the skin. The analysis applied to both small and large doses and, successfully, predicted experimental results. This work also includes the effects of CWA physicochemical properties on evaporation and dermal absorption through the stratum corneum. A sensitivity analysis was conducted to assess the impacts of small variations in the initial dose, environmental conditions, and …

The Interconnection Of The Vestibular And Oculomotor Systems Analyzed In Healthy Young Adults By Examining Postural Sway, Cassandra Martin

Theses

In order to study the human brain in a non-invasive way, the vestibular and oculomotor systems have been analyzed simultaneously. To achieve this, an eye movement and balance assessment was conducted for 29 (23 male; 21.6 ± 3.8 years) healthy participants with no history of concussions, brain injuries, vertigo, migraines, brain surgeries, eye surgeries, or amblyopia. The tasks consisted of eyes open, eyes closed, horizontal saccades, vertical saccades, vergence jumps, horizontal vestibulo-ocular reflex (VOR), and vertical VOR. Each task was completed in two stances: feet shoulder width apart and feet together. Distance, velocity, sway area, center of pressure (COP) frequency, …

Regulation Of Activity Patterns In Astyanax Mexicanus Cavefish, Udodirim Nwosu

Theses

Organisms commonly modulate their behavioral activity in relation to the 24-hour solar cycle. This modulation of behavior is driven by a combination of responses to external cues in the environment, such as light/dark visual signals, and internal pattern generators that can persist in the absence of external cues. However, there are animals that live in caves or in the deep sea that are isolated from solar circadian cues. How these animals regulate their behavioral activity in relation to external and internal rhythms is an open question in neuroscience that may help us to understand the mechanisms that other animals, including …

Inch - Unpacking Measurements, Pallavi Singh

Theses

While global efforts to close gender gaps have taken great strides in the past years, broad cultural views and social institutions still exist to place women at a subordinate level to men. It is a common scenario to trivialize a woman’s achievements or power in instances when she does not conform to gender norms taken as “a given” in a cultural context. A few elementary examples of such social inequality could include unequal pay at the workplace or menstruation in cultures where it is considered a defilement of a woman’s body instead of a female bodily process. In most of …

Distribution Patterns Of The Invasive Mussel Arcuatula Senhousia In Mission Bay, San Diego, California: Effects Of Sediment Grain Size And Byssus Thread Production On Predation, Samantha Ahlman

Theses

The ability of bivalves to avoid predation by using defensive behaviors such as burrowing and byssus production may vary depending on the sediment characteristics of a given habitat. The varying sediment characteristics that change with water velocity within estuaries may influence the distribution of bivalves and limit them to areas that optimize their ability to defend against predators. We examined the distribution patterns of the invasive Asian date mussel Arcuatula senhousia relative to the sediment grain size distribution in Mission Bay, an urban estuary located in San Diego, California, USA. Mussels and sediment were collected using an Ekman grab at …

The Effect Of Different Feeding Regimes On Recent Nutritional And Growth Measurements In Juvenile California Killifish (Fundulus Parvipinnis), Emily Parks

Theses

Gaining a deeper understanding of in-situ growth approximations for juvenile fishes is one way to understand how food consumption may affect fish growth. If variations in growth rate are strongly mirrored by past food status, then the condition (degree of well-being) of fish can be potentially used as a reference for relative prey availability. Furthermore, confirming that there is a positive relationship between food availability and fish growth rate is a critical first step to deepen our understanding of growth rate variation as well as examining if growth can be a proxy for habitat quality.

The California killifish (Fundulus …

Finding The Meaning In Ceramic Patterns From A Chaco Canyon Burial, Michael Lucero

Theses

The focus of this research considers the culture of the Ancestral Puebloans from the American Southwest region. This project reflects and examines the cultural arts and practices in relation to funerary aspects of the ancient Puebloan society that flourished in Chaco Canyon, located in present-day New Mexico. While investigations of historians and archaeologists have concentrated on findings within the Great House of Pueblo Bonito in Chaco Canyon, research focused on the structures and objects within rooms. The base of this research examines a collective set of vessels from burial room 33, excavated from the original exhibition of George H. Pepper, …

I, Object, Shanee Gordon

Theses

I, Object is a 3D animated film which dives into the difference between intrinsic value and perceived value, both by an individual and by society, through an anthropomorphized world where household objects must do what they can to survive the onslaught of a depressed, do-it-yourself, divorcee. Following the mockumentary format, these objects are interviewed about the situation they find themselves in. The different personalities and dynamics between the characters brings a comedic element to an otherwise serious encounter. Opening with how the situation has progressed until the moment the filming crew arrived, the film jumps between characters but sticks to …

Scents Of Memory In The Film: Tender Scent, Teng Chen

Theses

Tender scent is a film about perfumer Rita who finds that her favorite scents are all leading to the memory of her loved one whom she lost forever. Throughout the project year, I tried to visualize the protagonist’s feeling of the scents and deliver the emotions to the audience. There were several versions of the story during scriptwriting. The revisions happened due to the fact of psychology and the build-up of the character arc. The difficulty of blending the character-study story with active and attractive plots made me decide to have a non-linear story structure. We spent three months on …