Digital Commons Network^™

Mitochondrial Dna Diversity In West Mexico, Emma Zoiss

Graduate Student Theses, Dissertations, & Professional Papers

The long-standing movement of people, exchange of goods, and transmission of cultural traits are imprinted not only in the archaeological record but also within the genomes of individuals, making ancient DNA a powerful tool for uncovering past interactions and population dynamics. Despite attempts at systematic research, we are still missing critical information about pre-Columbian Mesoamerican populations in the Aztatlán region. This research will focus on those individuals recovered from archaeological sites located both in the highlands of the Lake Chapala Basin, as well as the coast of the Aztatlán core region. The integration of genetics into our understanding of the …

Exploring The Potential For Cynophagy, Working Dogs, And Village Dogs At Housepit 54, Daniel O. Nohren

Graduate Student Theses, Dissertations, & Professional Papers

Several field seasons at the Bridge River Archaeological Site have recovered a vast faunal assemblage subject of numerous archaeological and genetic investigations, several of which have focused on potential roles of domestic dogs (Canis familiaris). In order to examine the highly fractured nature of the Housepit 54 canid assemblage, the calculation of a fracture freshness index was performed which created quantitative units of measure useful in the comparison of bone fracture taphonomy over time and across taxonomic groups. This method has been employed specifically to investigate the potential for exploitation of within-bone nutrients among both a sample of …

Understanding The Factors That Influence University Environment: Gender Differences In Perceptions Of Female And Male Stem Graduate Students., Rachel Robinson

Graduate Student Theses, Dissertations, & Professional Papers

Despite increasing female representation in higher education, women remain underrepresented in STEM (science, technology, engineering, and mathematics) fields. This thesis investigates gendered perceptions of university environment among STEM graduate students, focusing on the role of faculty-student interaction as a form of social capital. The survey was developed and administered with Qualtrics Online Survey Software by members of the Social Science Research Group of the Pacific Northwest Circles of Success: Mentoring Opportunities in STEM. All graduate students in the participating universities pursuing master’s and doctoral degrees in a National Science Foundation STEM recognized program were eligible to complete the survey. Using …

As Above, So Below: Environmental Justice Stories Of Seeds, Mining And Migration, Cassidy M. Motahari

Graduate Student Theses, Dissertations, & Professional Papers

Environmental justice issues directly impact the health, cultural heritage and livelihoods of communities. This multimedia master’s project examines how federal policies, legal frameworks and the prioritization of corporate interests perpetuate environmental justice issues in the western United States. Three distinct stories provide a more nuanced understanding of the impact of systemic inequities on seed saving, mineral extraction and humanitarian aid on public lands.

With four companies controlling over 60 percent of the global seed market, declining genetic diversity in seeds limits the potential to cultivate and develop crops that meet the regional and cultural needs of diverse growers. In a …

Comparative Bioinformatic Methodologies In Paleogenetic Pathogen Identification In The Casas Grandes, Victoria Lynne Giovannangelo

Graduate Student Theses, Dissertations, & Professional Papers

The application of metagenomic tools to further elucidate ancient DNA (aDNA) holds promise in paleopathology, particularly for inferring disease patterns in ancient populations, especially in those that are understudied. This study conducts a comparative analysis of the efficacy of taxonomic pipelines--Kraken 2, HOPS/MALT, and HAYSTAC--in detecting pathogens within highly degraded aDNA samples extracted from 22 Medio Period Paquimé individuals from the Casas Grandes archaeological site in Northwest Mexico. The taxonomic results from the pipelines are compared with contamination detection program mapDamage, although concerns arose about the latter program’s ability to work with prokaryotes. Additionally, the findings are compared against prior …

Slaying The Windigo: Fear And Faith In The Anthropocene, Daniel J. Irwin

Graduate Student Theses, Dissertations, & Professional Papers

This thesis examines the changing affect of fear in the environment and how it is influencing writing in the Anthropocene. Chapter one lays the groundwork for the present moment of ecocriticism, examining how the relationship with the environment has changed throughout the history of ecocritical writing. The second chapter examines how fear has been an intrinsic element of environmental storytelling, starting with the romantic ideas of the sublime. With the recognition of the impact that humanity has had on Earth over the past several centuries, and the accelerating acceptance of the idea of the Anthropocene since the turn of the …

Fungal Symbionts As Hidden Architects Of Forest Health: From Tree Immunity To Beetle Nutrition, Lorinda Sabin Bullington

Graduate Student Theses, Dissertations, & Professional Papers

Symbioses of fungi with trees and insects play outsized roles in forest ecosystems, influencing tree growth, defense, physiology, and nutrient cycling. While their functional contributions are widely recognized, they remain poorly understood. I integrate findings from three studies examining fungal interactions with conifers and with bark beetles to highlight their significance in tree resistance to disease, nutrient redistribution within the tree, and forest ecology.

First, I demonstrate that foliar fungal endophytes and ectomycorrhizal fungi, together and independently, can enhance resistance in Pinus monticola seedlings against Cronartium ribicola, the pathogen responsible for white pine blister rust. Symbiont inoculation induced host terpene …

Acl Prevention Programming For Female Athletes, Julia Korklewski

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Spatial And Temporal Patterns Of Nutrient Limitation In A Western Montana River, Matthew T. Nichols

Graduate Student Theses, Dissertations, & Professional Papers

Enhanced loading of nitrogen (N) and phosphorus (P) is pervasive in rivers around the world. As a consequence of nutrient-rich conditions, many well-lit rivers experience severe algal blooms, which threaten water quality and aquatic habitats. Nutrient enrichment in the upper Clark Fork River, located in western Montana, has increased the productivity of benthic algae, Cladophora glomerata, which routinely forms extensive blooms during summer growing seasons (July – September). Addressing eutrophication in rivers begins with identifying the nutrients that contribute toward algal productivity. I deployed nutrient diffusing substrates (NDS), collected bi-weekly surface water samples, and conducted algal surveys at four …

Tenaciously Curious, Joe Mark Taylor

Graduate Student Theses, Dissertations, & Professional Papers

In this thesis paper, I will outline the journey I’ve taken throughout my graduate studies at the University of Montana and how it has culminated in my thesis exhibition, Tenaciously Curious. I’ll begin with an Introduction that speaks to the importance of finding ways to connect to nature, and the benefits we gain by recognizing our bodies as extensions of the organic world.

In the following section, Influences, Theory and Lineage, I’ll explore the themes that drive my research, highlight artists who have influenced my work, and discuss why this inquiry feels vital within our contemporary moment.

In the section …

Better Together: Leveraging Existing Research To Evaluate Population Trends, Habitat Selection, And Species Interactions Of Mesocarnivores, Jordan Lee Heiman

Graduate Student Theses, Dissertations, & Professional Papers

Whether from human impacts, climate change, or extreme fires, landscapes around the world are rapidly changing (Foley et al. 2005, Grimm et al. 2008, Bowman et al. 2020). As these landscapes change, it is clear that many ecosystems and species are being negatively affected (Laliberte and Ripple 2004, Butchart et al. 2010, Freeman et al. 2018, Li et al. 2022). With an expanding number of species facing extinction risks, it is critical for agencies to know when and where to focus their limited resources and conservation efforts (Martin et al. 2012, Auerbach et al. 2014, Bal et al. 2018). To …

Penta Ef-Hand Protein Alg-2 Regulates Copii Activity At Eres In Response To Calcium Signaling, Jacob Ryan Lapka

Graduate Student Theses, Dissertations, & Professional Papers

Intracellular protein trafficking is critical for maintaining cellular homeostasis, relying on highly regulated vesicular transport pathways originating from the endoplasmic reticulum (ER). Central to this process is the COPII coat complex, which governs cargo export at ER exit sites (ERES) by selectively packaging secretory proteins into transport vesicles. Recent studies highlight the regulatory role of calcium (Ca²⁺) signaling at ERES, where the Ca²⁺-binding Penta EF-hand proteins ALG-2 and peflin modulate COPII coat dynamics and cargo sorting in a context-dependent manner. In Chapter 2, we show that knockdown of the Inositol 1,4,5-trisphosphate receptor-3 (IP3R-3) in normal rat …

Social Connection And Disability: A Longitudinal Experimental Study Of Intervention Effectiveness And Moderators, Krys Standley

Graduate Student Theses, Dissertations, & Professional Papers

Background: Social disconnection is an epidemic-level problem that is exacerbated for people with disabilities. There is a pressing need for theory-based research to illuminate the factors that contribute to effective interventions for improving social connection in this population.

Objectives: The objectives of this study were 1) to test the hypothesis that the Peer Collective, a six-week, online, group-based intervention centered on social support topics, would result in increased levels of social connection among community-dwelling adults with any types of disabilities and 2) to examine potential moderating effects in this hypothesized relationship.

Method: A longitudinal intervention study design with random assignment …

Examining Coinfections With Human Cytomegalovirus, Christopher Samuel Peterson

Graduate Student Theses, Dissertations, & Professional Papers

Human cytomegalovirus (HCMV) is the largest of any human virus, both physically at up to 300 nm in diameter, and as a genome, with its 235 kbp DNA genome with at least 165 open reading frames. It is also the number 1 non-genetic cause of birth defects and has a global prevalence rate of just over 80%. Despite these characteristics, it is not as well known to the general public as some of the other human herpesviruses, such as herpes simplex or varicella-zoster virus. Like other herpesviruses, HCMV can establish latency, leading to a lifelong infection for its host with …

On Creating Bog Bodies: The Effects Of Ph Value On Dna Decomposition In A Bog Environment, Gabrielle B. Giangreco

Graduate Student Theses, Dissertations, & Professional Papers

Bog bodies have been a consistent area of interest in both archaeology and biological anthropology, due to their high rates of physical preservation. While there are many physical analyses that have been done on these remains, DNA analysis is lacking. Most studies focus on changes to the remains themselves or attempt to determine why they were placed in a bog. This study aims to examine the effects of pH level on the breakdown of DNA on remains placed inside a bog along with any larger differences in the preservation of the remains. The results of this study seem to point …

Investigating Algal Response To Scouring Flow And Nutrient Interactions In The Clark Fork River, Montana, Hannah E. Adkins

Graduate Student Theses, Dissertations, & Professional Papers

Algal communities play a vital role in aquatic ecosystems, but excessive growth can degrade water quality, disrupt ecosystem function, and hinder beneficial uses (Banish, 2017; Davie, 2012; Wang et al., 2007; Wurtsbaugh et al., 2019). Nutrient enrichment, particularly elevated nitrogen and phosphorus concentrations, is a well-established driver of algal proliferation in lentic systems. However, these nutrient–algae relationships are less predictable in lotic systems, where the dynamic effects of flow can modify or obscure these patterns (Bennet et al., 2017; Biggs and Close, 1989; Dodds et al., 2002). The Clark Fork River in western Montana has long struggled with nuisance algal …

Community Resilience Factors For Gsm Individuals: Considering The Roles Of Transgender Identity And Age, Benny Ilac

Graduate Student Theses, Dissertations, & Professional Papers

Gender and sexual minority (GSM) individuals face a variety of health disparities, including increased rates of depression, anxiety, and substance use. One explanation for the presence of these health disparities is the minority stress model, which suggests that proximal (internal) and distal (external) experiences of minority stressors contribute to poorer health outcomes in GSM populations. An important yet understudied component of this model is resilience, which acts as buffer against the negative impacts of minority stressors. Focus on community resilience factors, as opposed to individual resilience factors, may be particularly important in GSM populations in reducing the onus placed on …

Social, Ecological, And Anthropogenic Drivers Of Gray Wolf Vital Rates In Yellowstone National Park, Brenna Jo Cassidy

Graduate Student Theses, Dissertations, & Professional Papers

Populations of animals can be regulated by many factors, including food availability, anthropogenic influences, and social dynamics. Survival of adults and juveniles is one mechanism of population regulation, and these life stages can be influenced by different ecological pressures. In this dissertation, I investigate the ecological, anthropogenic, and social drivers of transboundary gray wolf (Canis lupus) vital rates in and around Yellowstone National Park. First, I evaluate the effect of variable harvest pressure on wolf survival and test whether anthropogenic mortality is compensatory or additive. Theory predicts that under densitydependent conditions, anthropogenic mortality should be offset by a corresponding reduction …

Population Dynamics Of White-Tailed Deer In A Multi-Predator, Multi-Prey Context In Northern Idaho, Elizabeth J. Painter-Flores

Graduate Student Theses, Dissertations, & Professional Papers

My dissertation was motivated by a fundamental management question. If a manager wants to increase the population of species A, how will it affect ungulate species B and C, and predator species D and E, and which populations can be managed to support species A’s success? This question is pertinent for both predators and prey, and in northern Idaho, harvest is used to not only manage populations in an ecological sense but also as a service to the public in the form of hunting opportunities. Understanding these interactions will benefit managers in their decision-making process and ensure the long-term stability …

Methods To Improve Efficiency, Sensitivity, And Selectivity Of Sequence Similarity Search, Daniel Olson

Graduate Student Theses, Dissertations, & Professional Papers

The rapid growth of biological sequence data presents significant challenges for bioinformatic analysis. A cornerstone of this analysis, sequence similarity search, is hampered by three main obstacles: sensitivity in detecting distant evolutionary relationships, selectivity in distinguishing true homology from spurious similarity caused by features like tandem repeats, and scalability to handle massive databases. This dissertation introduces two novel computational tools, ULTRA and NEAR, that address these challenges to improve the efficiency, sensitivity, and selectivity of sequence similarity search. Part I of this dissertation addresses the problem of selectivity by focusing on tandem repeats, a common source of false-positive results in …

Fluvial Geomorphic Resilience In Alluvial Mountain Rivers To Large Floods, Riley T. Henson

Graduate Student Theses, Dissertations, & Professional Papers

As hydroclimatic extremes intensify, large floods increasingly reshape river systems and threaten infrastructure. Fluvial geomorphic resilience, defined as a river’s resistance to, and recovery from, flood disturbance, offers a useful framework for understanding river response and guiding management. We assessed resilience at two scales: (1) a detailed geomorphic and hydraulic analysis of the June 2022 flood on East Rosebud Creek, Montana, which was part of broader flooding in the Greater Yellowstone Ecosystem, and (2) a broad-scale comparison of 12 flood-impacted alluvial mountain rivers across North America and Europe. We quantified resistance using active channel width ratios (W_R) and …

A Novel Positive Allosteric Modulator Of Glun1/3 Nmda Receptors, Samuel A. Galindo

Graduate Student Theses, Dissertations, & Professional Papers

The GluN3-containing (GluN1/3) N-methyl-D-aspartate (NMDA) receptors are glycine activated ligand-gated ion channels that are members of the family of excitatory ionotropic glutamate receptors. Compared to the glycine/glutamate-activated GluN2- containing NMDA receptors (GluN1/2), which have been extensively studied, the GluN1/3 receptors are poorly understood, but are implicated in neuronal processes related to synaptic maturation and plasticity. GluN1/3 receptors are also implicated in a variety of neurological diseases. In addition to their poor understanding, we lack proper pharmacological tools for the study and modulation of these GluN1/3 receptors. In this study, we evaluate the activity and mechanism of action for AIMS-129 as …

Nonactin And Salinomycin Fragment Scaffold Derived Synthesis For Antibiotic Drug Discovery, Evelyn Amelia Schwartz

Graduate Student Theses, Dissertations, & Professional Papers

Antibacterial drug discovery is an important necessity across all medical practices in both treatment and prevention of antimicrobial resistance. Infections with antimicrobial resistant pathogens are likely to increase over the years, and new classes of antibiotics can address this issue directly. Traditional screening of natural product libraries unfortunately has exhausted these resourceful compounds so that few easily accessible medical drug candidates remain. Natural products have often been recognized for their unique and complex structures that are attributed to their biological activity. This esteemed trait also is linked to cytotoxic activity and difficult synthetic modifications. A fragment of the natural product …

Genomics Of Adaptation To Yellowstone’S Geothermal Mosaic In The Yellow Monkeyflower Mimulus Guttatus, Colette Sevier Berg

Graduate Student Theses, Dissertations, & Professional Papers

The push and pull between recombination and selection shapes the structure of adaptive genomic variation. By mapping the genetic architecture and genetic basis of traits, we can test theoretical predictions about the nature of adaptation on the landscape. Furthermore, investigating the genetics of repeated evolutionary transitions sheds light on the nature of parallel evolution: are adaptations constrained at the molecular level, or are there many genetic paths to the same phenotype? In this dissertation I explore the genetic and phenotypic variation in the yellow monkeyflower Mimulus guttatus, which occupies Yellowstone National Park’s complex geothermal mosaic. In Chapter 1, I identify …

Indigenous Placemaking, Colonial Placetaking, And Indigenous Data Sovereignty: Implications Of Environmental Data Collection On Tribal Lands, Paige Nizhonii Kya'iyo Johnson

Graduate Student Theses, Dissertations, & Professional Papers

This project investigates how Indigenous Data Sovereignty protocols apply to environmental data collected on Tribal lands by federal and state entities. The 2011 and 2014 flooding of the Missouri River and a need for further soil moisture data led the United States Army Corps of Engineers Omaha District to implement a Mesonet weather station monitoring network across the Upper Missouri River Basin (UMRB). Historically, the Army Corps of Engineers has not included Indigenous perspectives into their decision-making, and this has caused Tribes to be distrustful of partnerships with them. The UMRB monitoring network will span across the Upper Missouri River …

Investigating Non-Invasive Survey Methods And Building A Predictive Occupancy Model For Harlequin Ducks (Histrionicus Histrionicus) In Western Montana And Northern Idaho, Holli Ann Holmes

Graduate Student Theses, Dissertations, & Professional Papers

Harlequin Ducks (Histrionicus histrionicus; HADU) are an imperiled sea duck that breeds along white-water mountain streams, but challenges in surveying them have made it difficult to understand population trends in their Northern Rocky Mountain breeding population. In this study we had two objectives: (1) evaluate non-invasive survey methods for detecting HADU on their breeding grounds in Western Montana and Northern Idaho, and (2) develop an occupancy model to predict potential breeding stream use for HADU across the region. First, we assessed the efficacy of ground-based foot surveys (GBS), environmental DNA (eDNA), and camera traps to detect breeding HADU during …

Climate Goodbyes: Reporting On Loss, Change And The Human Response In Montana, Madeline Jorden

Graduate Student Theses, Dissertations, & Professional Papers

This portfolio explores how climate-driven environmental change intersects with long-standing tensions over natural resource management, tribal sovereignty, and rural identity in Montana. It consists of three stories: a historically low water year at Flathead Lake that intensified disputes between tribal dam operators and non-tribal waterfront homeowners; the first confirmed presence of invasive smallmouth bass in the Bitterroot River, signaling warming stream conditions and ecological disruption; and a political narrative from Colstrip, where coal industry workers cling to promises of revival amid economic and regulatory decline. Each piece illustrates how climate change acts not only as an environmental force but also …

Fuel Break Effectiveness – Determining Ignition Thresholds Based On Radiant And Convective Energy Transfer, Daniel Michael Jimenez

Graduate Student Theses, Dissertations, & Professional Papers

Extended fire seasons and increased fire severity in and around protected ecosystems and the wildland urban interface (WUI) will increasingly challenge fire suppression, impact communities and threaten property and resources. Addressing this growing threat through proactive management solutions that protect values at risk requires improved fire behavior prediction capabilities.

Here I explore the radiant and convective energy transfer mechanisms of fire ignition or extinction associated with fuel discontinuities. Through a series of wind tunnel experiments I identified energy and ignition thresholds unique to changing wind speed, fuel moistures and fire line characteristics, and developed a multi-variate linear regression model to …

Occupational Therapy Assistant Education: Exploring The Relationship Between Student Factors And Nbcot Examination Pass Rates, Micahela Parker

Graduate Student Theses, Dissertations, & Professional Papers

The purpose of this retrospective quantitative study was to examine the predictive ability of gender, age, GPA, attendance and both Level II fieldwork scores (Fieldwork One and Fieldwork Two) on first attempt NBCOT exam success. To practice as an occupational therapy assistant, an individual must complete an accredited occupational therapy assistant (OTA) program and pass the National Board for Certification in Occupational Therapy (NBCOT) exam. The NBCOT exam was developed to ensure entry-level occupational therapy assistants have the necessary knowledge to make safe and competent decisions.

The overarching research focus was to understand the extent of one or more of …

Structural And Dynamic Properties Of Gas-Phase Molecules In High-Order Harmonic Generation: Insights From Time-Dependent Density Functional Theory Calculations, Christopher Michael King

Graduate Student Theses, Dissertations, & Professional Papers

High-order harmonic generation, or HHG, is a highly nonlinear quantum optical process capable of generating X-ray/ultraviolet radiation. An atom or molecule is irradiated with a mid-IR laser at high intensity, ionizes, and then emits high-frequency light at integer multiples of the driving laser frequency when an ionized electron recollides with the molecular ion. A convenient tabletop source of coherent XUV light and a common seed for free-electron lasers, HHG can also serve as a self-probe of the source atom or molecule. In the latter case, the HHG spectrum can provide valuable insight into the structure and dynamics of the species …