Digital Commons Network^™

Genome-Wide Microarray Analysis Leads To Identification Of Genes In Response To Herbicide, Metribuzin In Wheat Leaves, Whitney Pilcher, Hana Zandkamiri, Kelly Arceneaux, Stephen Harrison, Niranjan Baisakh

Faculty Publications

Herbicides are an important component of weed management in wheat, particularly in the southeastern US where weeds actively compete with wheat throughout the winter for nutrients and reduce tillering and ultimately the yield of the crop. Some wheat varieties are sensitive to metribuzin, a low-cost non-selective herbicide, leading to leaf chlorosis, stand loss, and decreased yield. Knowledge of the genetics of herbicide tolerance in wheat is very limited and most new varieties have not been screened for metribuzin tolerance. The identification of genes associated with metribuzin tolerance will lead to the development of molecular markers for use in screening breeding …

Effects Of Isolation On Ant Assemblages Depend On Microhabitat, Xuan Chen, Benjamin Adams, Michael Layne, Christopher Swarzenski, David Norris, Linda Hooper-Bui

Faculty Publications

How isolation affects biological communities is a fundamental question in ecology and conservation biology. Local diversity (α) agnd regional diversity (γ) are consistently lower in insular areas. The pattern of species turnover (β diversity) and the influence of isolation on competitive interactions are less predictable. Differences in communities across microhabitats within an isolated patch could contribute to the variability in patterns related to isolation. Trees form characteristically dense and sparse patches (low vs. high isolation) in floating marshes in coastal Louisiana, and canopy and root areas around these trees could support distinct ant communities. Consequently, trees in floating marshes provide …

Colorful Seashells: Identification Of Haem Pathway Genes Associated With The Synthesis Of Porphyrin Shell Color In Marine Snails, Suzanne T. Williams, Anne E. Lockyer, Patricia Dyal, Tomoyuki Nakano, Celia K. C. Churchill, Daniel Isaac Speiser

Faculty Publications

Very little is known about the evolution of molluskan shell pigments, although Mollusca is a highly diverse, species rich, and ecologically important group of animals comprised of many brightly colored taxa. The marine snail genus Clanculus was chosen as an exceptional model for studying the evolution of shell color, first, because in Clanculus margaritarius and Clanculus pharaonius both shell and foot share similar colors and patterns; and second, because recent studies have identified the pigments, trochopuniceus (pink-red), and trochoxouthos (yellow-brown), both comprised of uroporphyrin I and uroporphyrin III, in both shell and colored foot tissue of these species. These unusual …

Association Mapping For Traits Related To Nitrogen Use Efficiency In Tropical Maize Lines Under Field Conditions, Júlia Silva Morosini, Leandro De Freitas Mendonça, Danilo Hottis Lyra, Giovanni Galli, Miriam Suzane Vidotti, Roberto Fritsche-Neto

Faculty Publications

Aims: Nitrogen deficiency is one of the most critical abiotic stresses for maize (Zea mays) cultivation worldwide. For a productive and sustainable scenario, developing genotypes more efficient in nitrogen use is essential. This study aimed to identify single nucleotide polymorphism (SNP) markers associated with nitrogen use efficiency (NUE) traits under field conditions and candidate genes related to these markers by genome-wide association study (GWAS). Methods: Sixty-four tropical maize inbred lines were evaluated in ideal and low nitrogen conditions for total root length (TRL) and low nitrogen tolerance index (LNTI). GWAS was performed using a fixed and random model circulating probability …

Controls On Modern Erosion And The Development Of The Pearl River Drainage In The Late Paleogene, Chang Liu, Peter D. Clift, Andrew Carter, Philipp Böning, Zhaochu Hu, Zhen Sun, Katharina Pahnke

Faculty Publications

© 2017 Elsevier B.V. The Pearl River and its tributaries drains large areas of southern China and has been the primary source of sediment to the northern continental margin of the South China Sea since its opening. In this study we use a combination of bulk sediment geochemistry, Nd and Sr isotope geochemistry, and single grain zircon U-Pb dating to understand the source of sediment in the modern drainage. We also performed zircon U-Pb dating on Eocene sedimentary rocks sampled by International Ocean Discovery Program (IODP) Expedition 349 in order to constrain the source of sediment to the rift before …

The Proposed Dropping Of The Genus Crassostrea For All Pacific Cupped Oysters And Its Replacement By A New Genus Magallana: A Dissenting View, B.L. Bayne, M. Ahrens, S.K. Allen, M. Angles D'Auriac, T. Backeljau, P. Beninger, R. Bohn, P. Boudry, J. Davis, T. Green, X. Guo, D. Hedgecock, A. Ibarra, P. Kingsley-Smith, M. Krause, C. Langdon, S. Lapegu, C. Li, D. Manahan, R. Mann, L. Perez-Paralle, E.N. Powell, P.D. Rawson, D. Speiser, J.-L. Sanchez, S. Shumway, H. Wang

Faculty Publications

No abstract provided.

Genome Sequences Of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, Darthp, Hammy, Krueger, Lasthope, Peanam, Phelpsodu, Phrank, Sirphilip, Slimphazie, And Unicorn, Kirk R. Anders, Nazir Barekzi, Aaron A. Best, Gregory D. Frederick, Dmitri V. Mavrodi, Edwin Vasquez, Sea-Phages, Nana Yaa A. Amoh, Frederick N. Baliraine, William J. Buchser, Thomas P. Cast, Carmen E. Chamberlain, Hui-Min Chung, William A. D'Angelo, Christian T. Farris, Mariceli Fernandez-Martinez, Haley D. Fischman, Mark H. Forsyth, Anna G. Fortier, Kara F. Gallo, Greta J. Held, Miguel A. Lomas, Natalia Y. Maldonado-Vasquez, Claudia H. Moonsammy, Peace Namboote, Sudip Paudel, Sarah-Elizabeth Polley, Gabriella Reyes, Michael R. Rubin, Margaret S. Saha, Joseph Stukey, Tristan D. Tobias, Rebecca A. Garlena, Ty H. Stoner, Steven G. Cresawn, Deborah Jacobs-Sera, Welkin H. Pope, Daniel A. Russell, Graham F. Hatfull

Faculty Publications

We report the genome sequences of 14 cluster K mycobacteriophages isolated using Mycobacterium smegmatis mc²155 as host. Four are closely related to subcluster K1 phages, and 10 are members of subcluster K6. The phage genomes span considerable sequence diversity, including multiple types of integrases and integration sites.

Quantity And Quality Limit Detritivore Growth: Mechanisms Revealed By Ecological Stoichiometry And Co-Limitation Theory, Halvor M. Halvorson, Erik Sperfeld, Michelle A. Evans-White

Faculty Publications

Resource quantity and quality are fundamental bottom-up constraints on consumers. Best understood in autotroph-based systems, co-occurrence of these constraints may be common but remains poorly studied in detrital-based systems. Here, we used a laboratory growth experiment to test limitation of the detritivorous caddisfly larvae Pycnopsyche lepida across a concurrent gradient of oak litter quantity (food supply) and quality (phosphorus : carbon [P:C ratios]). Growth increased simultaneously with quantity and quality, indicating co-limitation across the resource gradients. We merged approaches of ecological stoichiometry and co-limitation theory, showing how co-limitation reflected shifts in C and P acquisition throughout homeostatic regulation. Increased growth …

Thresholds Of Sea-Level Rise Rate And Sea-Level Rise Acceleration Rate In A Vulnerable Coastal Wetland, Wei Wu, Patrick D. Biber, Matthew Bethel

Faculty Publications

Feedbacks among inundation, sediment trapping, and vegetation productivity help maintain coastal wetlands facing sea-level rise (SLR). However, when the SLR rate exceeds a threshold, coastal wetlands can collapse. Understanding the threshold helps address key challenges in ecology—nonlinear response of ecosystems to environmental change, promotes communication between ecologists and resource managers, and facilitates decision-making in climate change policies. We studied the threshold of SLR rate and developed a new threshold of SLR acceleration rate on sustainability of coastal wetlands as SLR is likely to accelerate due to enhanced anthropogenic forces. Deriving these two thresholds depends on the temporal scale, the interaction …

Short Communication: Massive Erosion In Monsoonal Central India Linked To Late Holocene Land Cover Degradation, Liviu Giosan, Camilo Ponton, Muhammed Usman, Jerzy Glusztajn, Dorian Q. Fuller, Valier Galy, Negar Haghipour, Joel E. Johnson, Cameron Mcintyre, Lukas Wacker, Timothy I. Eglinton

Faculty Publications

Soil erosion plays a crucial role in transferring sediment and carbon from land to sea, yet little is known about the rhythm and rates of soil erosion prior to the most recent few centuries. Here we reconstruct a Holocene erosional history from central India, as integrated by the Godavari River in a sediment core from the Bay of Bengal. We quantify terrigenous fluxes, fingerprint sources for the lithogenic fraction and assess the age of the exported terrigenous carbon. Taken together, our data show that the monsoon decline in the late Holocene significantly increased soil erosion and the age of exported …

Hydrogen-Bonding-Directed Ordered Assembly Of Carboxylated Poly(3-Alkylthiophene)S, David W. Bilger, Jose A. Figueroa, Neil D. Redeker, Amrita Sarkar, Morgan Stefik, Shanjuu Zhang

Faculty Publications

Hydrogen-bonding-induced ordered assembly of poly(3-alkylthiophene)s derivatives bearing carboxylic acid groups has been investigated from diluted and concentrated solutions to solid films using ultraviolet–visible absorption spectroscopy, polarized optical microscopy, and four-point probe conductivity measurements. In dilute solutions, the polymer undergoes a spontaneous structural transition from disordered coil-like to ordered rodlike conformations, which is evidenced by time-dependent chromism. Many factors such as alkyl-chain length, types of solvents, and temperature are studied to understand the assembly behavior. Transition kinetics of the assembly process reveals a universal second-order rate law, indicating an intermolecular origin due to hydrogen bonding. When more concentrated, hydrogen bonding drives …

Attractiveness As A Function Of Skin Tone And Facial Features: Evidence From Categorization Studies, Elena V. Stepanova, Michael J. Strube

Faculty Publications

Participants rated the attractiveness and racial typicality of male faces varying in their facial features from Afrocentric to Eurocentric and in skin tone from dark to light in two experiments. Experiment 1 provided evidence that facial features and skin tone have an interactive effect on perceptions of attractiveness and mixed-race faces are perceived as more attractive than single-race faces. Experiment 2 further confirmed that faces with medium levels of skin tone and facial features are perceived as more attractive than faces with extreme levels of these factors. Black phenotypes (combinations of dark skin tone and Afrocentric facial features) were rated …

Supporting Individuals With Autism Spectrum Disorder In Understanding And Coping With Complex Social Emotional Issues, Kaitlyn P. Ahlers, Terisa P. Gabrielsen, Danielle Lewis, Anna M. Brady, April Litchford

Faculty Publications

Core deficits in autism spectrum disorder (ASD) center around social communication and behavior. For those with ASD, these deficits complicate the task of learning how to cope with and manage complex social emotional issues. Although individuals with ASD may receive sufficient academic and basic behavioral support in school settings, supports for dealing with complex social emotional issues are more difficult to access, even though these issues significantly impact student learning. When addressing these challenging social- and emotional-based issues, school and professional personnel need more specific instructional skill sets and resources to effectively and compassionately support students with ASD. In this …

Brachylicoa Lui, A New Species Of Parapseudid Tanaidacean (Crustacea: Peracarida: Apseudomorpha), From The Hawaiian Islands, With A Taxonomic Key, Andrés G. Morales-Núñez, Sterling Ulrich, Richard W. Heard

Faculty Publications

Brachylicoa lui sp. n. is described from the coastal waters of the Hawaiian island of O‘ahu. It is distinguished from the other four nominal members of Brachylicoa by a combination of characters including (1) an incised margin between base of rostrum and carapace, (2) mandible palp article-1 with cluster of 20–25 simple setae, (3) maxillule biarticulate palp ending in eight “cleaning’ setae, (4) maxilliped inner sub-distal margin with two stout spiniform seta, and (5) pereopod-6 with carpus having three plumose setae on mid-dorsal margin. Brachylicoa (=Apseudes) babelmandebensis sensu Guţu is tentatively transferred to the genus Saltipedis Guţu sensu …

A Communal Catalogue Reveals Earth's Multiscale Microbial Diversity, Luke R. Thompson, Jon G. Sanders, Daniel Mcdonald, Amnon Amir, Joshua Ladau, Kenneth J. Locey, Robert J. Prill, Anupriya Tripathi, Sean M. Gibbons, Gail Ackermann, Jose A. Navas-Molina, Stefan Janssen, Evguenia Kopylova, Yoshiki Vázquez-Baeza, Antonio González, James T. Morton, Siavash Mirarab, Zhenjiang Zech Xu, Lingjing Jiang, Mohamed F. Haroon, Jad Kanbar, Qiyun Zhu, Se Jin Song, Tomasz Kosciolek, Nicholas A. Bokulich, Joshua Lefler, Colin J. Brislawn, Gregory Humphrey, Sarah M. Owens, Jarrad Hampton-Marcell, Donna Berg-Lyons, Valerie Mckenzie, Noah Fierer

Faculty Publications

© 2017 Macmillan Publishers Limited, part of Springer Nature. All rights reserved. Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes comparisons among studies, hindering the development of global inferences about microbial life on Earth. Here we present a meta-analysis of microbial community samples collected by hundreds of researchers for the Earth Microbiome Project. Coordinated protocols and new analytical methods, particularly the use of exact sequences instead of clustered operational taxonomic units, enable …

Msaabcr Operon Is Involved In Persister Cell Formation In Staphylococcus Aureus, Gyan S. Sahukhal, Shanti Pandey, Mohamed O. Elasri

Faculty Publications

Background

Persister cells comprise a phenotypic variant that shows extreme antibiotic tolerance resulting in treatment failures of bacterial infections. While this phenomenon has posed a great threat in public health, mechanisms underlying their formation in Staphylococcus aureus remain largely unknown. Increasing evidences of the presence of persister cells in recalcitrant infections underscores the great urgency to unravel the mechanism by which these cells develop. Previously, we characterized msaABCR operon that plays roles in regulation of virulence, biofilm development and antibiotic resistance. We also characterized the function of MsaB protein and showed that MsaB is a putative transcription factor that binds …

Mechanical Shielding Of Rapidly Growing Cells Buffers Growth Heterogeneity And Contributes To Organ Shape Reproducibility, Nathan Hervieux, Satoru Tsugawa, Antoine Fruleux, Mathilde Dumond, Anne Lise Routier-Kierzkowska, Tamiki Komatsuzaki, Arezki Boudaoud, John C. Larkin, Richard S. Smith, Chun Biu Li, Olivier Hamant

Faculty Publications

© 2017 Elsevier Ltd A landmark of developmental biology is the production of reproducible shapes, through stereotyped morphogenetic events. At the cell level, growth is often highly heterogeneous, allowing shape diversity to arise. Yet, how can reproducible shapes emerge from such growth heterogeneity? Is growth heterogeneity filtered out? Here, we focus on rapidly growing trichome cells in the Arabidopsis sepal, a reproducible floral organ. We show via computational modeling that rapidly growing cells may distort organ shape. However, the cortical microtubule alignment along growth-derived maximal tensile stress in adjacent cells would mechanically isolate rapidly growing cells and limit their impact …

The Association Between Gastro-Oesophageal Reflux Disease And Subsequent Rheumatoid Arthritis Occurrence: A Nested Case–Control Study From Taiwan, Herng-Ching Lin, Sudha Xirasagar, Cha-Ze Lee, Chung-Chien Huang, Chao-Hung Chen

Faculty Publications

Objective Gastro-oesophageal reflux disease (GORD) is a common comorbidity among patients with rheumatoid arthritis (RA). While GORD has been attributed to the antirheumatic medications, no studies of human cohorts have investigated a link between GORD and RA. This study investigates whether GORD is associated with a subsequent RA diagnosis over a 5-year follow-up using a population-based dataset.

Setting Taiwan

Participants We used data from the Taiwan Longitudinal Health Insurance Database. The study group consisted of 13 645 patients with an ambulatory claim showing a GORD diagnosis. We used propensity score matching to select 13 645 comparison patients (one per study …

Commercial Sexual Exploitation Of Youth In The United States: A Qualitative Systematic Review, Michelle Hampton, Michelle Lieggi

Faculty Publications

Background:Homeless, runaway, and transgender youth are at high risk for commercial sexual exploitation in the United States. Research examining this phenomenon is growing but requires synthesis to facilitate its use by professionals who serve this population. The purpose of this review was to aggregate the qualitative evidence regarding commercially sexually exploited youth (CSEY) in the United States.Methods:The search included published and unpublished qualitative studies with current or former CSEY who reside in the United States.Results:There were 19 studies included in the review with a total of 795 participants. Eight themes were identified and grouped into three broader categories: experiences that …

Cosmopolitan Species As Models For Ecophysiological Responses To Global Change: The Common Reed Phragmites Australis, Franziska Eller, Hana Skálová, Joshua S. Caplan, Ganesh P. Bhattarai, Melissa K. Burger, James T. Cronin, Wen Yong Guo, Xiao Guo, Eric L.G. Hazelton, Karin M. Kettenring, Carla Lambertini, Melissa K. Mccormick, Laura A. Meyerson, Thomas J. Mozdzer, Petr Pyšek, Brian K. Sorrell, Dennis F. Whigham, Hans Brix

Faculty Publications

© 2017 Eller, Skálová, Caplan, Bhattarai, Burger, Cronin, Guo, Guo, Hazelton, Kettenring, Lambertini, McCormick, Meyerson, Mozdzer, Pyšek, Sorrell, Whigham and Brix. Phragmites australis is a cosmopolitan grass and often the dominant species in the ecosystems it inhabits. Due to high intraspecific diversity and phenotypic plasticity, P. australis has an extensive ecological amplitude and a great capacity to acclimate to adverse environmental conditions; it can therefore offer valuable insights into plant responses to global change. Here we review the ecology and ecophysiology of prominent P. australis lineages and their responses to multiple forms of global change. Key findings of our review …

Multiple Species Of Cuckoos Are Superior Predictors Of Bird Species Richness In Asia, Anders Pape Møller, Federico Morelli, Yanina Benedetti, Timothy Mousseau, Tongping Su, Bo Zhou, Piotr Tryjanowski, Wei Liang

Faculty Publications

The abundance and the presence of common cuckoos Cuculus canorus have been shown to predict species richness of birds across Europe, while there are no such analyses available for other continents where species richness of parasitic cuckoos is larger. Here, we tested whether species richness of birds increased with the number of cuckoo species in two study areas in China and one in Japan. We also tested whether species richness of birds can be predicted by the number of cuckoo individuals. Furthermore, we compared the strength of association between overall bird species richness and species richness of cuckoos, Paridae, Corvidae, …

An Undergraduate Laboratory Manual For Analyzing A Crispr Mutant With A Predicted Role In Regeneration, Susan Walsh, Ashley Becker, Paxton S. Sickler, Damian G. Clarke, Erin Jimenez

Faculty Publications

Exposing students to undergraduate research has reportedly improved students’ development of knowledge and skills in the laboratory, self-efficacy, satisfaction with their research, retention, and perseverance when faced with obstacles. Furthermore, utilizing authentic course-based undergraduate research experiences (CUREs) includes all students enrolled in the class, giving those who may not otherwise have access to an independent undergraduate research project an opportunity to engage in the scientific process in context of an original, unanswered question. In the fall of 2016, second semester introductory biology students conducted a semester-long research project on the transcription factor Lin28a to determine the effect of Lin28a on …

Diatom Transcriptional And Physiological Responses To Changes In Iron Bioavailability Across Ocean Provinces, Natalie R. Cohen, Kelsey A. Ellis, Robert H. Lampe, Heather Mcnair, Benjamin S. Twining, Maria T. Maldonado, Mark A. Brzezinski, Fedor I. Kuzminov, Kimberlee Thamatrakoln, Claire P. Till, Kenneth W. Bruland, William G. Sunda, Sibel Bargu, Adrian Marchetti

Faculty Publications

Changes in iron (Fe) bioavailability influence diatom physiology and community composition, and thus have a profound impact on primary productivity and ecosystem dynamics. Iron limitation of diatom growth rates has been demonstrated in both oceanic and coastal waters of the Northeast Pacific Ocean and is predicted to become more pervasive in future oceans. However, it is unclear how the strategies utilized by phytoplankton to cope with low Fe bioavailability and resupply differ across these ocean provinces. We investigated the response of diatom communities to variable Fe conditions through incubation experiments performed in the Fe mosaic of the California Upwelling Zone …

Measurement And Modeling Of Out-Of-Field Doses From Various Advanced Post-Mastectomy Radiotherapy Techniques, Jihyung Yoon, David Heins, Xiaodong Zhao, Mary Sanders, Rui Zhang

Faculty Publications

More and more advanced radiotherapy techniques have been adopted for post-mastectomy radiotherapies (PMRT). Patient dose reconstruction is challenging for these advanced techniques because they increase the low out-of-field dose area while the accuracy of out-of-field dose calculations by current commercial treatment planning systems (TPSs) is poor. We aim to measure and model the out-of-field radiation doses from various advanced PMRT techniques. PMRT treatment plans for an anthropomorphic phantom were generated, including volumetric modulated arc therapy with standard and flattening-filter-free photon beams, mixed beam therapy, 4-field intensity modulated radiation therapy (IMRT), and tomotherapy. We measured doses in the phantom where the …

Reaching In Clutter With Whole-Arm Tactile Sensing, Advait Jain, Marc D. Killpack, Aaron Edsinger, Charles Kemp

Faculty Publications

Clutter creates challenges for robot manipulation, including a lack of non-contact trajectories and reduced visibility for line-of-sight sensors. We demonstrate that robots can use whole-arm tactile sensing to perceive clutter and maneuver within it, while keeping contact forces low. We first present our approach to manipulation, which emphasizes the benefits of making contact across the entire manipulator and assumes the manipulator has low-stiffness actuation and tactile sensing across its entire surface. We then present a novel controller that exploits these assumptions. The controller only requires haptic sensing, handles multiple contacts, and does not need an explicit model of the environment …

Integrating The Effects Of Salinity On The Physiology Of The Eastern Oyster, Crassostrea Virginica, In The Northern Gulf Of Mexico Through A Dynamic Energy Budget Model, Romain Lavaud, Megan K. La Peyre, Sandra M. Casas, Cédric Bacher, Jérôme F. La Peyre

Faculty Publications

© 2017 We present a Dynamic Energy Budget (DEB) model for the eastern oyster, Crassostrea virginica, which enables the inclusion of salinity as a third environmental variable, on top of the standard foodr and temperature variables. Salinity changes have various effects on the physiology of oysters, potentially altering filtration and respiration rates, and ultimately impacting growth, reproduction and mortality. We tested different hypotheses as to how to include these effects in a DEB model for C. virginica. Specifically, we tested two potential mechanisms to explain changes in oyster shell growth (cm), tissue dry weight (g) and gonad dry weight (g) …

What's It To Me? Self-Interest And Evaluations Of Financial Conflicts Of Interest, Samuel Bruton, Donald Sacco

Faculty Publications

Disclosure has become the preferred way of addressing the threat to researcher objectivity arising from financial conflicts of interest (FCOIs). This article argues that the effectiveness of disclosure at protecting science from the corrupting effects of FCOIs—particularly the kind of disclosure mandated by US federal granting agencies—is more limited than is generally acknowledged. Current NIH and NSF regulations require disclosed FCOIs to be reviewed, evaluated, and managed by officials at researchers’ home institutions. However, these reviewers are likely to have institutional and personal interests of their own that may undermine the integrity of their evaluations. This paper presents experimental findings …

A Role For The Cystic Fibrosis Transmembrane Conductance Regulator In The Nitric Oxide-Dependent Release Of Cl – From Acidic Organelles In Amacrine Cells, Vijai Krishnan, J. Wesley Maddox, Tyler Rodriguez, Evanna Gleason

Faculty Publications

© 2017 the American Physiological Society. γ-Amino butyric acid (GABA) and glycine typically mediate synaptic inhibition because their ligandgated ion channels support the influx of Cl – . However, the electrochemical gradient for Cl – across the postsynaptic plasma membrane determines the voltage response of the postsynaptic cell. Typically, low cytosolic Cl – levels support inhibition, whereas higher levels of cytosolic Cl – can suppress inhibition or promote depolarization. We previously reported that nitric oxide (NO) releases Cl – from acidic organelles and transiently elevates cytosolic Cl – , making the response to GABA and glycine excitatory. In this study, …

Reconstructing Yeasts Phylogenies And Ancestors From Whole Genome Data, Bing Feng, Yu Ling, Lingxi Zhou, Roufan Xia, Fei Hu, Chao Liu

Faculty Publications

Phylogenetic studies aim to discover evolutionary relationships and histories. These studies are based on similarities of morphological characters and molecular sequences. Currently, widely accepted phylogenetic approaches are based on multiple sequence alignments, which analyze shared gene datasets and concatenate/coalesce these results to a final phylogeny with maximum support. However, these approaches still have limitations, and often have conflicting results with each other. Reconstructing ancestral genomes helps us understand mechanisms and corresponding consequences of evolution. Most existing genome level phylogeny and ancestor reconstruction methods can only process simplified real genome datasets or simulated datasets with identical genome content, unique genome markers, …

The Role Of Feature-Based Discrimination In Driving Health Disparities Among Black Americans, Randl B. Dent, Nao Hagiwara, Elena V. Stepanova, Tiffany L. Green

Faculty Publications

Objective: A growing body of research finds that darker skin tone is often associated with poorer physical and mental health in Blacks. However, the psychosocial mechanisms underlying the skin tone-health link remain elusive. The present study seeks to address this knowledge gap by investigating the direct and indirect (through perceived discrimination, socioeconomic status, and self-esteem) effects of skin tone on self-reported physical and mental health.

Design: An urban sample of 130 Blacks aged 35 and above completed a self-administered computerized survey as a part of larger cross-sectional study.

Results: Self-esteem played a particularly important role in mediating the associations between …