Digital Commons Network^™

Increase In Absolute Leaf Water Content Tends To Keep Pace With That Of Leaf Dry Mass—Evidence From Bamboo Plants, Weiwei Huang, Gadi V.P. Reddy, Yueyi Li, Jørgen Bo Larsen, Peijian Shi

Faculty Publications

Leaves, as the most important photosynthetic organ of plants, are intimately associated with plant function and adaptation to environmental changes. The scaling relationship of the leaf dry mass (or the fresh mass) vs. leaf surface area has been referred to as “diminishing returns”, suggesting that the leaf area fails to increase in proportion to leaf dry mass (or fresh mass). However, previous studies used materials across different families, and there is lack of studies testing whether leaf fresh mass is proportional to the leaf dry mass for the species in the same family, and examining the influence of the scaling …

Effect Of Precipitation And Temperature On Larval Survival Of Cephus Cinctus (Hymenoptera: Cephidae) In Barley Cultivars, Buddhi B. Achhami, Gadi V.P. Reddy, Jamie D. Sherman, Robert K.D. Peterson, David K. Weaver

Faculty Publications

Host plant traits strongly affect survivorship of insect herbivores, and host suitability is especially important for the wheat stem sawfly, Cephus cinctus Norton, which spends its entire egg, larval, and pupal periods in a single stem. Measuring larval survival inside stems from egg hatch through diapause-mediated dormancy is a potential measure of population size for the next year but is also useful in assessing effects of growing season precipitation and temperature. Larval growth is synchronized with host plant growth, and the larva cannot switch hosts. Thus, incorporating plant physiological time, as growing degree days (GDD), may yield a better prediction …

Cellulose Nanofibers From Rapidly Microwave-Delignified Energy Cane Bagasse And Their Application In Drilling Fluids As Rheology And Filtration Modifiers, Chaozheng Liu, Meichun Li, Changtong Mei, Weimin Chen, Jingquan Han, Yiying Yue, Suxia Ren, Alfred D. French, Giovanna M. Aita, Gillian Eggleston, Qinglin Wu

Faculty Publications

Energy cane bagasse (ECB) is the major residue after the cane is milled to extract juice for sugar, biochemical, and/or biofuel production. The sustainable conversion of ECB into high value-added products can help reduce agricultural waste, and enhance utilization of bioresources. In the present work, we demonstrate that ECB can be converted into cellulose nanofibers (CNFs) that can serve as high value-added additives in bentonite water-based fluids (BT-WDFs). Particularly, cellulose fibers (CFs) were rapidly isolated from ECB by microwave-assisted NaOH / NaClO2 treatments. CFs treated with the higher NaOH concentration and microwave irradiation lost more lignin (96.2 % delignification) and …

Effects Of Irrigation Discharge On Salinity Of A Large Freshwater Lake: A Case Study In Chagan Lake, Northeast China, Xuemei Liu, Guangxin Zhang, Jingjie Zhang, Y. Jun Xu, Yao Wu, Yanfeng Wu, Guangzhi Sun, Yueqing Chen, Hongbo Ma

Faculty Publications

The salinization of freshwater lakes by agricultural activities poses a threat to many lake ecosystems around the world. Quantitative, medium-to long-term studies are needed to understand how some common agricultural practices, such as the discharge of crop irrigation in the vicinities of large lakes, may affect lake salinization. In this study, hydrological, hydrodynamics, water quality and meteorological datasets were used to analyze the long-term spatial-temporal variations of water salinities of a major lake, the Chagan Lake, in Northeast China. An integrated hydrodynamics-salinity model was used to simulate lake water salinity changes taking place at different times and locations, including (i) …

3-D Printed Customizable Vitrification Devices For Preservation Of Genetic Resources Of Aquatic Species, Connor J. Tiersch, Yue Liu, Terrence R. Tiersch, William T. Monroe

Faculty Publications

Sperm vitrification as an alternative approach to conventional cryopreservation (equilibrium freezing) allows quick and low-cost sample preservation and is suitable for small-bodied aquatic species with miniscule testis, fieldwork at remote locations, and small-scale freezing for research purposes. The goal of this present study was to develop operational prototypes of 3-dimensional (3-D) printed vitrification devices with innovative components that can provide comprehensive functionalities for practical repository development for aquatic species. The design featured an elongated loop to suspend a thin film of sperm sample in cryoprotectant, a retractable sleeve to protect the vitrified samples and allow permanent labeling, a handle to …

Birds In Fragmented Amazonian Rainforest: Lessons From 40 Years At The Biological Dynamics Of Forest Fragments Project, Philip C. Stouffer

Faculty Publications

For decades, ecologists have studied fundamental questions of how Amazonian biodiversity is maintained, and whether that diversity can persist following deforestation. The long history of avian research at the Biological Dynamics of Forest Fragments Project, near Manaus, Brazil, has helped advance this understanding in the context of a broader research program focused on rainforest fragments embedded in a dynamic matrix. By sampling birds beginning before fragments were isolated, in the late 1970s, and continuing the protocol to the present, our work has revealed community dynamics driven not just by area and isolation, but also by larger landscape patterns, particularly second …

Temporal And Concentration Effects Of Methanol On Cryopreservation Of Zebrafish (Danio Rerio) Sperm, Huiping Yang, E. Hu, Terrence Tiersch, Carrie Carmichael, Jen Matthews, Zoltan M. Varga

Faculty Publications

We evaluated the cryoprotective effects of methanol on zebrafish sperm at different concentrations, exposure times, and stages during cryopreservation. Samples were collected by crushing of dissected testes or abdominal stripping. After exposure to 0%, 2%, 5%, 8%, and 10% methanol for 0-11 min, fresh sperm (1 × 106 cells/mL) did not show changes in plasma membrane integrity (measured by flow cytometer), but cell size changes (light scatter) were observed after exposure to 8% or 10%. After exposure for 0-60 min, fresh sperm (1 × 108 cells/mL) did not show significant changes in survival or membrane integrity. Sperm cryopreserved in 5%, …

Bark Water Vapour Conductance Is Associated With Drought Performance In Tropical Trees, Brett T. Wolfe

Faculty Publications

Bark water vapour conductance (g bark) is a rarely considered functional trait. However, for the few tree species measured to date, it appears high enough to create stem water deficits associated with mortality during droughts, when access to water is limited. I tested whether g bark correlates with stem water deficit during drought conditions in two datasets of tropical trees: One of saplings in forest understories during an annual dry season and one of potted saplings in a shadehouse during extreme drought conditions. Among all 14 populations of eight species measured, g bark varied more than 10-fold (0.86-12.98 mmol m-2 …

Using Public Databases For Genomic Prediction Of Tropical Maize Lines, Pedro Patric Pinho Morais, Deniz Akdemir, Luciano Rogério Braatz De Andrade, Jean Luc Jannink, Roberto Fritsche-Neto, Aluízio Borém, Filipe Couto Alves, Danilo Hottis Lyra, Ítalo Stefanine Correia Granato

Faculty Publications

In this paper, the aims were (a) to test the usefulness of using genomic and phenotypic information from public databases (open access) to predict genetic values for tropical maize inbred lines regarding plant and ear height; (b) to identify how the population structure, the use of optimized training sets (OTSs) and the amount of information originating from public databases affect the predictive ability. Thus, 29 training sets (TSs) were defined considering three diversity panels: the University of São Paulo (USP—validation set (VS)) and the ASSO and USDA North Central Regional Plant Introduction Station (NCRPIS) (external public panels—predictors), which were divided …

The "Challenge" Of Depletion: Why The Oyster Fishery Is Not Self-Regulating, Eric N. Powell, John M. Klinck, Leanne M. Poussard

Faculty Publications

© 2020 National Shellfisheries Association. All rights reserved. The possibility that the economics of the oyster fishery impose a self-limitation on overharvesting has been proffered on occasion. The inefficiency of harvesting by the fishery has been evaluated and estimates of the exploitation rate permissible under conditions of maximum sustainable yield have been obtained in previous studies. The question becomes to what extent does the inefficiency of harvest interact with the economics of the fishery to compromise ready detection of overfishing? This study explores the possibility that the constraint of economics on the fishery occurs at oyster exploitation rates that are …

“Toxic” Schools? How School Exposures During Adolescence Influence Trajectories Of Health Through Young Adulthood, Courtney E. Boen, Karen Kozlowski, Karolyn D. Tyson

Faculty Publications

© 2020 The Author(s) A large body of research identifies the critical role of early-life social contexts such as neighborhoods and households in shaping life course trajectories of health. Less is known about whether and how school characteristics affect individual health and contribute to population health inequality. However, recent scholarship argues that some school environments are so stressful due to high levels of violence, disorder, and poverty that they may be “toxic” to student health, but this hypothesis has not been tested using population data. Integrating insights from the life course perspective and stress process model, we use rich longitudinal …

Change In Implicit Alcohol Associations Over Time: Moderation By Drinking History And Gender, Scott A. Baldwin, Kristen P. Lindgren, Kirsten P. Peterson, Reinout W. Wiers, Bethany A. Teachman

Faculty Publications

Implicit measures of alcohol-related associations or implicit alcohol associations are associated with drinking outcomes over time and can be understood as vulnerability markers for problem drinking. Longitudinal research remains rare, leaving open questions about how implicit alcohol associations themselves change over time and what factors moderate that change. We examined these questions with data from a larger study of first and second year U.S. college students. We investigated how these implicit alcohol associations change over time and potential moderators of those changes (gender, lifetime drinking history, family history of problem drinking, and class standing). A sample of 506 students (57% …

Air Quality Improvement During Triple-Lockdown In The Coastal City Of Kannur, Kerala To Combat Covid-19 Transmission, C. T. Resmi, T. Nishanth, M. K. Satheesh Kumar, M. G. Manoj, M. Balachandramohan, K. T. Valsaraj

Faculty Publications

The novel SARS-CoV-2 coronavirus that emerged in the city of Wuhan, China, last year has since become the COVID-19 pandemic across all continents. To restrict the spread of the virus pandemic, the Government of India imposed a lockdown from 25 March 2020. In India, Kannur district was identified as the first "hotspot" of virus transmission and a "triple-lockdown" was implemented for a span of twenty days from 20 April 2020. This article highlights the variations of surface O-3, NO, NO2, CO, SO2, NH3, VOC's, PM10, PM2.5 and meteorological parameters at the time of pre-lockdown, lockdown and triple-lockdown days at Kannur …

Longitudinal Links Between Parents’ Mental Health, Parenting, And Adolescents’ Mental Health: Moderation By Adolescent Sex, Laura M. Padilla-Walker, Hannah B. Apsley

Faculty Publications

This study explored mothering and fathering as possible mediators of the relationship between parent and adolescent mental health concerns and considered the adolescents’ biological sex as a potential moderator. Using structural equation modeling, the longitudinal links between parents’ mental health, parental psychological control, parent-adolescent connectedness, and adolescent mental health in 500 families— including 338 fathers and 500 mothers—were explored over the course of 5 years. The mean age of the adolescents (51.8% female, 69.6% European American) at Time 1 was 13.3 years. Mothers’ symptoms of anxiety directly predicted girls’ depression 5 years later. This relation was not mediated by parenting …

Mercury Concentrations In Store‐Bought Shrimp, Angelle Mccormick, Matthew D. Robertson, Rebecka Brasso, Stephen R. Midway

Faculty Publications

No abstract provided.

Verified Amended Complaint By Next Friend James Dwyer Against Defendants Norfolk Department Of Human Services (Ndhs), James G. Dwyer

Faculty Publications

No abstract provided.

Effect Of Dilution On Sedimentational Separation Of Bacteria From Blood, Clifton M. Anderson, William G. Pitt

Faculty Publications

Bacteria must be separated from septic whole blood in preparation for rapid antibiotic susceptibility tests. This work improves upon past work isolating bacteria from whole blood by exploring an important experimental factor: Whole blood dilution. Herein, we use the continuity equation to model red blood cell sedimentation and show that overall spinning time decreases as the blood is diluted. We found that the bacteria can also be captured more efficiently from diluted blood, up to approximately 68 ± 8% recovery (95% confidence interval). However, diluting blood both requires and creates extra fluid that end users must handle; an optimal dilution, …

N 6-Methyladenine In Dna Antagonizes Satb1 In Early Development, Zheng Li, Shuai Zhao, Raman V. Nelakanti, Kaixuan Lin, Tao P. Wu, Myles H. Alderman, Cheng Guo, Pengcheng Wang, Min Zhang, Wang Min, Zongliang Jiang, Yinsheng Wang, Haitao Li, Andrew Z. Xiao

Faculty Publications

© 2020, The Author(s), under exclusive licence to Springer Nature Limited. The recent discovery of N6-methyladenine (N6-mA) in mammalian genomes suggests that it may serve as an epigenetic regulatory mechanism1. However, the biological role of N6-mA and the molecular pathways that exert its function remain unclear. Here we show that N6-mA has a key role in changing the epigenetic landscape during cell fate transitions in early development. We found that N6-mA is upregulated during the development of mouse trophoblast stem cells, specifically at regions of stress-induced DNA double helix destabilization (SIDD)2–4. Regions of SIDD are conducive to topological stress-induced unpairing …

The Genome Sequence Of The Grape Phylloxera Provides Insights Into The Evolution, Adaptation, And Invasion Routes Of An Iconic Pest, Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi Min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard

Faculty Publications

Background: Although native to North America, the invasion of the aphid-like grape phylloxera Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the past 150 years, viticulture relied on grafting-resistant North American Vitis species as rootstocks, thereby limiting genetic stocks tolerant to other stressors such as pathogens and climate change. Limited understanding of the insect genetics resulted in successive outbreaks across the globe when rootstocks failed. Here we report the 294-Mb genome of D. vitifoliae as a basic tool to understand host plant manipulation, nutritional endosymbiosis, and enhance global viticulture. Results: Using a combination of genome, RNA, …

Microbial Diversity Drives Carbon Use Efficiency In A Model Soil, Luiz A. Domeignoz-Horta, Grace Pold, Xiao-Jun Allen Liu, Serita D. Frey, Jerry M. Melillo, Kristen M. Deangelis

Faculty Publications

Empirical evidence for the response of soil carbon cycling to the combined effects of warming, drought and diversity loss is scarce. Microbial carbon use efficiency (CUE) plays a central role in regulating the flow of carbon through soil, yet how biotic and abiotic factors interact to drive it remains unclear. Here, we combine distinct community inocula (a biotic factor) with different temperature and moisture conditions (abiotic factors) to manipulate microbial diversity and community structure within a model soil. While community composition and diversity are the strongest predictors of CUE, abiotic factors modulated the relationship between diversity and CUE, with CUE …

Trans-Axonal Signaling In Neural Circuit Wiring, Olivia Spead, Fabienne E. Poulain

Faculty Publications

The development of neural circuits is a complex process that relies on the proper navigation of axons through their environment to their appropriate targets. While axon–environment and axon–target interactions have long been known as essential for circuit formation, communication between axons themselves has only more recently emerged as another crucial mechanism. Trans-axonal signaling governs many axonal behaviors, including fasciculation for proper guidance to targets, defasciculation for pathfinding at important choice points, repulsion along and within tracts for pre-target sorting and target selection, repulsion at the target for precise synaptic connectivity, and potentially selective degeneration for circuit refinement. This review outlines …

Climate From The Mcmurdo Dry Valleys, Antarctica, 1986–2017: Surface Air Temperature Trends And Redefined Summer Season, M. K. Obryk, P. T. Doran, A. G. Fountain, M. Myers, C. P. Mckay

Faculty Publications

©2020. American Geophysical Union. All Rights Reserved. The weather of the McMurdo Dry Valleys, Antarctica, the largest ice-free region of the Antarctica, has been continuously monitored since 1985 with currently 14 operational meteorological stations distributed throughout the valleys. Because climate is based on a 30-year record of weather, this is the first study to truly define the contemporary climate of the McMurdo Dry Valleys. Mean air temperature and solar radiation based on all stations were −20°C and 102 W m−2, respectively. Depending on the site location, the mean annual air temperatures on the valleys floors ranged between −15°C and −30°C, …

Discovery Of Exosomes From Tick Saliva And Salivary Glands Reveals Therapeutic Roles For Cxcl12 And Il-8 In Wound Healing At The Tick–Human Skin Interface, Wenshuo Zhou, Faizan Tahir, Joseph Che Yen Wang, Michael Woodson, Michael B. Sherman, Shahid Karim, Girish Neelakanta, Hameeda Sultana

Faculty Publications

© Copyright © 2020 Zhou, Tahir, Wang, Woodson, Sherman, Karim, Neelakanta and Sultana.Ticks secrete various anti-coagulatory, anti-vasoconstrictory, anti-inflammatory, and anti-platelet aggregation factors in their saliva at the bite site during feeding to evade host immunological surveillance and responses. For the first time, we report successful isolation of exosomes (small membrane-bound extracellular signaling vesicles) from saliva and salivary glands of partially fed or unfed ixodid ticks. Our data showed a novel role of these in vivo exosomes in the inhibition of wound healing via downregulation of C-X-C motif chemokine ligand 12 (CXCL12) and upregulation of interleukin-8 (IL-8). Cryo-electron microscopy (cryo-EM) analysis …

Reaching 1.5 And 2.0 °C Global Surface Temperature Targets Using Stratospheric Aerosol Geoengineering, Cheryl Harrison

Faculty Publications

Abstract. A new set of stratospheric aerosol geoengineering (SAG) model experiments has been performed with Community Earth System Model version 2 (CESM2) with the Whole Atmosphere Community Climate Model (WACCM6) that are based on the Coupled Model Intercomparison Project phase 6 (CMIP6) overshoot scenario (SSP5-34-OS) as a baseline scenario to limit global warming to 1.5 or 2.0 ∘C above 1850–1900 conditions. The overshoot scenario allows us to applying a peak-shaving scenario that reduces the needed duration and amount of SAG application compared to a high forcing scenario. In addition, a feedback algorithm identifies the needed amount of sulfur dioxide injections …

Targeting Severe Acute Respiratory Syndrome-Coronavirus (Sars-Cov-1) With Structurally Diverse Inhibitors: A Comprehensive Review, Maryam S. Hosseini-Zare, Ramasamy Thilagavathi, Chelliah Selvam

Faculty Publications

Coronaviruses, which were discovered in 1968, can lead to some human viral disorders, like severe acute respiratory syndrome (SARS), Middle East respiratory syndrome-related (MERS), and, recently, coronavirus disease 2019 (COVID-19). The coronavirus that leads to COVID-19 is rapidly spreading all over the world and is the reason for the deaths of thousands of people. Recent research has revealed that there is about 80% sequence homology between the coronaviruses that cause SARS and COVID-19. Considering this fact, we decided to collect the maximum available information on targets, structures, and inhibitors reported so far for SARS-CoV-1 that could be useful for researchers …

Laboratory Colonization By Dirofilaria Immitis Alters The Microbiome Of Female Aedes Aegypti Mosquitoes, Abdulsalam Adegoke, Erik Neff, Amie Geary, Montana Ciara Husser, Kevin Wilson, Shawn Michael Norris, Guha Dharmarajan, Shahid Karim

Faculty Publications

Background

The ability of blood-feeding arthropods to successfully acquire and transmit pathogens of medical and veterinary importance has been shown to be interfered with, or enhanced by, the arthropod’s native microbiome. Mosquitoes transmit viruses, protozoan and filarial nematodes, the majority of which contribute to the 17% of infectious disease cases worldwide. Dirofilaria immitis, a mosquito-transmitted filarial nematodes of dogs and cats, is vectored by several mosquito species including Aedes aegypti.

Methods

In this study, we investigated the impact of D. immitis colonization on the microbiome of laboratory reared female Ae. aegypti. Metagenomic analysis of the V3–V4 variable …

Initial Investigation Of Seasonal Flammability Of Three Invasive East Texas Forest Understory Fuels Using Thermogravimetric Analysis, Mike Tiller, Brian P. Oswald, Alyx Frantzen, Warren Conway, Ikuai Hung

Faculty Publications

East Texas forest understory fuels have become increasingly infested with invasive species which have contributed to greater hazardous fuel loads when combined with decades of fire exclusion and passive management. This study focused on estimating seasonal changes in flammability parameters of invasive yaupon (Ilex vomitoria), Chinese privet (Ligustrum sinense), and Chinese tallow (Triadica sebifera) using thermogravimetric analysis. Foliage and stem samples were collected in the dormant (February) and growing (August) seasons. Differential thermogravimetric (DTG) and proximate analyses were used to estimate species specific flammability parameters related to relative spontaneous ignition temperature (RSIT), gas-phase maximum …

Extensive Morphological Variability In Asexually Produced Planktic Foraminifera, Catherine V. Davis, Caitlin M. Livsey, Hannah M. Palmer, Pincelli M. Hull, Ellen Thomas, Tessa M. Hill, Claudia R. Benitez-Nelson

Faculty Publications

Marine protists are integral to the structure and function of pelagic ecosystems and marine carbon cycling, with rhizarian biomass alone accounting for more than half of all mesozooplankton in the oligotrophic oceans. Yet, understanding how their environment shapes diversity within species and across taxa is limited by a paucity of observations of heritability and life history. Here, we present observations of asexual reproduction, morphologic plasticity, and ontogeny in the planktic foraminifer in laboratory culture. Our results demonstrate that planktic foraminifera reproduce both sexually and asexually and demonstrate extensive phenotypic plasticity in response to nonheritable factors. These two processes fundamentally explain …

Hurricane Disturbance Stimulated Nitrification And Altered Ammonia Oxidizer Community Structure In Lake Okeechobee And St. Lucie Estuary (Florida), Justyna J. Hampel, Mark J. Mccarthy, Sanni L. Aalto, Silvia E. Newell

Faculty Publications

© Copyright © 2020 Hampel, McCarthy, Aalto and Newell. Nitrification is an important biological link between oxidized and reduced forms of nitrogen (N). The efficiency of nitrification plays a key role in mitigating excess N in eutrophic systems, including those with cyanobacterial harmful algal blooms (cyanoHABs), since it can be closely coupled with denitrification and removal of excess N. Recent work suggests that competition for ammonium (NH₄⁺) between ammonia oxidizers and cyanoHABs can help determine microbial community structure. Nitrification rates and ammonia-oxidizing archaeal (AOA) and bacterial (AOB) community composition and gene abundances were quantified in Lake Okeechobee …

Decomposability Of Soil Organic Matter Over Time: The Soil Incubation Database (Sidb, Version 1.0) And Guidance For Incubation Procedures, Christina Schadel, Jeffrey Beem-Miller, Mina Aziz Rad, Susan E. Crow, Caitlin E. Hicks Pries, Jessica G. Ernakovich, Alison M. Hoyt, Alain Plante, Shane Stoner, Claire C. Treat, Carlos A. Sierra

Faculty Publications

The magnitude of carbon (C) loss to the atmosphere via microbial decomposition is a function of the amount of C stored in soils, the quality of the organic matter, and physical, chemical, and biological factors that comprise the environment for decomposition. The decomposability of C is commonly assessed by laboratory soil incubation studies that measure greenhouse gases mineralized from soils under controlled conditions. Here, we introduce the Soil Incubation Database (SIDb) version 1.0, a compilation of time series data from incubations, structured into a new, publicly available, open-access database of C flux (carbon dioxide, CO2, or methane, CH4). In addition, …